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Protein

Propanediol utilization protein PduA

Gene

pduA

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSENT99287:GCTI-2050-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Propanediol utilization protein PduA
Gene namesi
Name:pduA
Ordered Locus Names:STM2038
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000001014 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9494Propanediol utilization protein PduAPRO_0000201511Add
BLAST

Proteomic databases

PaxDbiP0A1C7.
PRIDEiP0A1C7.

Expressioni

Inductioni

By propanediol.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM2038.

Structurei

Secondary structure

1
94
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 1310Combined sources
Helixi14 – 2411Combined sources
Beta strandi30 – 3910Combined sources
Beta strandi42 – 509Combined sources
Helixi51 – 6616Combined sources
Beta strandi69 – 7810Combined sources
Turni82 – 876Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3NGKX-ray2.26A2-94[»]
4PPDX-ray2.40A/B/C/D/E/F/G2-94[»]
4QIFX-ray2.00A/B/C/D/E/F/G/H/I2-94[»]
4QIGX-ray3.30A/B/C/D/E/F/G2-94[»]
4RBTX-ray2.30A/B/C2-94[»]
4RBUX-ray2.79A/B/C/D/E/F/G/H/I2-94[»]
4RBVX-ray3.10A/B/C/D/E/F/G2-38[»]
A/B/C/D/E/F/G41-94[»]
ProteinModelPortaliP0A1C7.
SMRiP0A1C7. Positions 5-89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
OMAiCASARQI.
OrthoDBiEOG6ZH2H4.
PhylomeDBiP0A1C7.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A1C7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQEALGMVE TKGLTAAIEA ADAMVKSANV MLVGYEKIGS GLVTVIVRGD
60 70 80 90
VGAVKAATDA GAAAARNVGE VKAVHVIPRP HTDVEKILPK GISQ
Length:94
Mass (Da):9,592
Last modified:March 1, 2005 - v1
Checksum:i5EDC7C793F19DE1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026270 Genomic DNA. Translation: AAB84107.2.
AE006468 Genomic DNA. Translation: AAL20942.1.
RefSeqiNP_460983.1. NC_003197.1.
WP_001183618.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL20942; AAL20942; STM2038.
GeneIDi1253559.
KEGGistm:STM2038.
PATRICi32382659. VBISalEnt20916_2160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026270 Genomic DNA. Translation: AAB84107.2.
AE006468 Genomic DNA. Translation: AAL20942.1.
RefSeqiNP_460983.1. NC_003197.1.
WP_001183618.1. NC_003197.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3NGKX-ray2.26A2-94[»]
4PPDX-ray2.40A/B/C/D/E/F/G2-94[»]
4QIFX-ray2.00A/B/C/D/E/F/G/H/I2-94[»]
4QIGX-ray3.30A/B/C/D/E/F/G2-94[»]
4RBTX-ray2.30A/B/C2-94[»]
4RBUX-ray2.79A/B/C/D/E/F/G/H/I2-94[»]
4RBVX-ray3.10A/B/C/D/E/F/G2-38[»]
A/B/C/D/E/F/G41-94[»]
ProteinModelPortaliP0A1C7.
SMRiP0A1C7. Positions 5-89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM2038.

Proteomic databases

PaxDbiP0A1C7.
PRIDEiP0A1C7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL20942; AAL20942; STM2038.
GeneIDi1253559.
KEGGistm:STM2038.
PATRICi32382659. VBISalEnt20916_2160.

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
OMAiCASARQI.
OrthoDBiEOG6ZH2H4.
PhylomeDBiP0A1C7.

Enzyme and pathway databases

BioCyciSENT99287:GCTI-2050-MONOMER.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The control region of the pdu/cob regulon in Salmonella typhimurium."
    Chen P., Anderson D.I., Roth J.R.
    J. Bacteriol. 176:5474-5482(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: LT2.
  2. "Propanediol utilization genes (pdu) of Salmonella typhimurium: three genes for the propanediol dehydratase."
    Bobik T.A., Xu Y., Jeter R.M., Otto K.E., Roth J.R.
    J. Bacteriol. 179:6633-6639(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: LT2.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LT2 / SGSC1412 / ATCC 700720.
  4. "The propanediol utilization (pdu) operon of Salmonella enterica serovar typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation."
    Bobik T.A., Havemann G.D., Busch R.J., Williams D.S., Aldrich H.C.
    J. Bacteriol. 181:5967-5975(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], SEQUENCE REVISION TO C-TERMINUS.
    Strain: LT2.

Entry informationi

Entry nameiPDUA_SALTY
AccessioniPrimary (citable) accession number: P0A1C7
Secondary accession number(s): P37448
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: March 1, 2005
Last modified: May 27, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.