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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Staphylococcus aureus (strain NCTC 8325)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:SAOUHSC_02493
OrganismiStaphylococcus aureus (strain NCTC 8325)
Taxonomic identifieri93061 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000008816 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001046111 – 5950S ribosomal protein L30Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi93061.SAOUHSC_02493.

Structurei

Secondary structure

159
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 8Combined sources6
Helixi17 – 25Combined sources9
Beta strandi34 – 38Combined sources5
Helixi41 – 49Combined sources9
Helixi50 – 53Combined sources4
Beta strandi54 – 56Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4WCEX-ray3.53W1-59[»]
4WF9X-ray3.43W1-59[»]
4WFAX-ray3.39W1-59[»]
4WFBX-ray3.43W1-59[»]
5HKVX-ray3.66W1-59[»]
5HL7X-ray3.55W1-59[»]
5LI0electron microscopy3.8022-58[»]
5ND8electron microscopy3.7021-59[»]
5ND9electron microscopy3.7021-59[»]
5NRGX-ray3.44W1-59[»]
5TCUelectron microscopy3.90LD2-58[»]
ProteinModelPortaliP0A0G2.
SMRiP0A0G2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL30 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VPB. Bacteria.
COG1841. LUCA.
HOGENOMiHOG000039916.
KOiK02907.
OMAiIGGKQNQ.

Family and domain databases

CDDicd01658. Ribosomal_L30. 1 hit.
Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B. 1 hit.
InterProiView protein in InterPro
IPR036919. L30_ferredoxin-like_sf.
IPR005996. Ribosomal_L30_bac-type.
IPR016082. Ribosomal_L30_ferredoxin-like.
PANTHERiPTHR15892. PTHR15892. 1 hit.
PfamiView protein in Pfam
PF00327. Ribosomal_L30. 1 hit.
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A0G2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKLQITLTR SVIGRPETQR KTVEALGLKK TNSSVVVEDN PAIRGQINKV

KHLVTVEEK
Length:59
Mass (Da):6,554
Last modified:March 1, 2005 - v1
Checksum:i6625A0E67A7C26B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U96620 Genomic DNA. Translation: AAB54020.1.
CP000253 Genomic DNA. Translation: ABD31512.1.
RefSeqiWP_001096577.1. NC_007795.1.
YP_500961.1. NC_007795.1.

Genome annotation databases

EnsemblBacteriaiABD31512; ABD31512; SAOUHSC_02493.
GeneIDi31214966.
3920870.
KEGGisao:SAOUHSC_02493.
PATRICifig|93061.5.peg.2249.

Similar proteinsi

Entry informationi

Entry nameiRL30_STAA8
AccessioniPrimary (citable) accession number: P0A0G2
Secondary accession number(s): O06444, Q2FW24
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: March 1, 2005
Last modified: October 25, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families