Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Coat protein

Gene
N/A
Organism
White clover mosaic virus (strain M) (WCMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA.

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Capsid protein
Short name:
CP
OrganismiWhite clover mosaic virus (strain M) (WCMV)
Taxonomic identifieri12189 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaePotexvirus
Virus hostiTrifolium [TaxID: 3898]
Proteomesi
  • UP000007627 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226321 – 190Coat proteinAdd BLAST190

Structurei

3D structure databases

SMRiP09502.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

P09502-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATTTATTPP SLTDIRALKY TSSTVSVASP AEIEAITKTW AETFKIPNDV
60 70 80 90 100
LPLACWDLAR AFADVGASSK SELTGDSAAL AGVSRKQLAQ AIKIHCTIRQ
110 120 130 140 150
FCMYFANIVW NIMLDTKTPP ASWSKLGYKE ESKFAGFDFF DGVNHPAALM
160 170 180 190
PADGLIRGPS DAEILAHQTA KQVALHRDAK PTWHKRCQLC
Length:190
Mass (Da):20,685
Last modified:July 1, 1989 - v1
Checksum:i754E01527926A24E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06728 Genomic RNA. Translation: CAA29908.1.
M18920 Genomic RNA. Translation: AAA69638.1.
PIRiS01089. VCWGWC.
RefSeqiNP_620719.1. NC_003820.1.

Genome annotation databases

GeneIDi944396.
KEGGivg:944396.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_WCMVM
AccessioniPrimary (citable) accession number: P09502
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: July 1, 1989
Last modified: March 15, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families