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P09099 (XYLB_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Xylulose kinase
Short name=Xylulokinase
EC=2.7.1.17
Gene names
Name:xylB
Ordered Locus Names:b3564, JW3536
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length484 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

ATP + D-xylulose = ADP + D-xylulose 5-phosphate.

Sequence similarities

Belongs to the FGGY kinase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 484484Xylulose kinase
PRO_0000059549

Secondary structure

1 .................................................................................. 484
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P09099 [UniParc].

Last modified July 1, 1989. Version 1.
Checksum: 8CC62CBD546AFCA0

FASTA48452,618
        10         20         30         40         50         60 
MYIGIDLGTS GVKVILLNEQ GEVVAAQTEK LTVSRPHPLW SEQDPEQWWQ ATDRAMKALG 

        70         80         90        100        110        120 
DQHSLQDVKA LGIAGQMHGA TLLDAQQRVL RPAILWNDGR CAQECTLLEA RVPQSRVITG 

       130        140        150        160        170        180 
NLMMPGFTAP KLLWVQRHEP EIFRQIDKVL LPKDYLRLRM TGEFASDMSD AAGTMWLDVA 

       190        200        210        220        230        240 
KRDWSDVMLQ ACDLSRDQMP ALYEGSEITG ALLPEVAKAW GMATVPVVAG GGDNAAGAVG 

       250        260        270        280        290        300 
VGMVDANQAM LSLGTSGVYF AVSEGFLSKP ESAVHSFCHA LPQRWHLMSV MLSAASCLDW 

       310        320        330        340        350        360 
AAKLTGLSNV PALIAAAQQA DESAEPVWFL PYLSGERTPH NNPQAKGVFF GLTHQHGPNE 

       370        380        390        400        410        420 
LARAVLEGVG YALADGMDVV HACGIKPQSV TLIGGGARSE YWRQMLADIS GQQLDYRTGG 

       430        440        450        460        470        480 
DVGPALGAAR LAQIAANPEK SLIELLPQLP LEQSHLPDAQ RYAAYQPRRE TFRRLYQQLL 


PLMA

« Hide

References

« Hide 'large scale' references
[1]"Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli."
Lawlis V.B., Dennis M.S., Chen E.Y., Smith D.H., Henner D.J.
Appl. Environ. Microbiol. 47:15-21(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12 / MM294 / ATCC 33625 / DSM 5208.
[2]"Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[4]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[5]"Escherichia coli proteome analysis using the gene-protein database."
VanBogelen R.A., Abshire K.Z., Moldover B., Olson E.R., Neidhardt F.C.
Electrophoresis 18:1243-1251(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY 2D-GEL.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		K01996 Genomic DNA. Translation: AAA24769.1.
X04691 Genomic DNA. Translation: CAA28395.1.
U00039 Genomic DNA. Translation: AAB18541.1.
U00096 Genomic DNA. Translation: AAC76588.1.
AP009048 Genomic DNA. Translation: BAE77729.1.
PIRKIECXY. A30266.
RefSeqNP_418021.1. NC_000913.2.
YP_491870.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2ITMX-ray2.10A/B1-484[»]
2NLXX-ray2.70A/B1-484[»]
ProteinModelPortalP09099.
SMRP09099. Positions 1-484.
ModBaseSearch...

Protein-protein interaction databases

IntActP09099. 1 interaction.
STRING511145.b3564.

Proteomic databases

PRIDEP09099.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC76588; AAC76588; b3564.
BAE77729; BAE77729; BAE77729.
GeneID12933545.
948133.
KEGGecj:Y75_p3611.
eco:b3564.
PATRIC32122604. VBIEscCol129921_3679.

Organism-specific databases

EchoBASEEB1068.
EcoGeneEG11075. xylB.

Phylogenomic databases

eggNOGCOG1070.
HOGENOMHOG000222138.
KOK00854.
OMAGYSEQRP.
ProtClustDBPRK15027.

Enzyme and pathway databases

BioCycEcoCyc:XYLULOKIN-MONOMER.
ECOL316407:JW3536-MONOMER.
MetaCyc:XYLULOKIN-MONOMER.

Gene expression databases

GenevestigatorP09099.

Family and domain databases

InterProIPR018485. Carb_kinase_FGGY_C.
IPR018483. Carb_kinase_FGGY_CS.
IPR018484. Carb_kinase_FGGY_N.
IPR006000. Xylulokinase.
[Graphical view]
PfamPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR01312. XylB. 1 hit.
PROSITEPS00933. FGGY_KINASES_1. 1 hit.
PS00445. FGGY_KINASES_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP09099.

Entry information

Entry nameXYLB_ECOLI
AccessionPrimary (citable) accession number: P09099
Secondary accession number(s): Q2M7M7
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: July 1, 1989
Last modified: May 1, 2013
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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