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P09099

- XYLB_ECOLI

UniProt

P09099 - XYLB_ECOLI

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Protein

Xylulose kinase

Gene

xylB

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + D-xylulose = ADP + D-xylulose 5-phosphate.

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. xylulokinase activity Source: EcoCyc

GO - Biological processi

  1. carbohydrate phosphorylation Source: GOC
  2. D-xylose catabolic process Source: EcoCyc
  3. xylulose catabolic process Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Xylose metabolism

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:XYLULOKIN-MONOMER.
ECOL316407:JW3536-MONOMER.
MetaCyc:XYLULOKIN-MONOMER.
RETL1328306-WGS:GSTH-3723-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylulose kinase (EC:2.7.1.17)
Short name:
Xylulokinase
Gene namesi
Name:xylB
Ordered Locus Names:b3564, JW3536
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11075. xylB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 484484Xylulose kinasePRO_0000059549Add
BLAST

Proteomic databases

PRIDEiP09099.

Expressioni

Gene expression databases

GenevestigatoriP09099.

Interactioni

Protein-protein interaction databases

IntActiP09099. 1 interaction.
STRINGi511145.b3564.

Structurei

Secondary structure

1
484
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 76Combined sources
Beta strandi9 – 179Combined sources
Beta strandi23 – 308Combined sources
Helixi45 – 6218Combined sources
Beta strandi70 – 756Combined sources
Beta strandi80 – 834Combined sources
Helixi102 – 11110Combined sources
Helixi115 – 1195Combined sources
Helixi128 – 13811Combined sources
Helixi140 – 1434Combined sources
Beta strandi148 – 1503Combined sources
Helixi152 – 16110Combined sources
Beta strandi165 – 1673Combined sources
Helixi168 – 1725Combined sources
Turni173 – 1753Combined sources
Turni179 – 1824Combined sources
Helixi186 – 1905Combined sources
Turni191 – 1933Combined sources
Helixi196 – 1983Combined sources
Beta strandi201 – 2033Combined sources
Beta strandi207 – 2115Combined sources
Helixi214 – 2196Combined sources
Beta strandi226 – 2283Combined sources
Helixi233 – 2419Combined sources
Beta strandi249 – 26214Combined sources
Beta strandi271 – 2733Combined sources
Beta strandi275 – 2784Combined sources
Beta strandi285 – 2917Combined sources
Helixi294 – 30411Combined sources
Helixi310 – 3167Combined sources
Helixi317 – 3193Combined sources
Beta strandi328 – 3336Combined sources
Beta strandi345 – 3539Combined sources
Helixi358 – 38124Combined sources
Turni382 – 3843Combined sources
Beta strandi390 – 3945Combined sources
Helixi395 – 3973Combined sources
Helixi400 – 41011Combined sources
Beta strandi414 – 4185Combined sources
Helixi424 – 43613Combined sources
Helixi442 – 4454Combined sources
Beta strandi451 – 4555Combined sources
Helixi459 – 47921Combined sources
Helixi480 – 4834Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ITMX-ray2.10A/B1-484[»]
2NLXX-ray2.70A/B1-484[»]
ProteinModelPortaliP09099.
SMRiP09099. Positions 1-484.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP09099.

Family & Domainsi

Sequence similaritiesi

Belongs to the FGGY kinase family.Curated

Phylogenomic databases

eggNOGiCOG1070.
HOGENOMiHOG000222138.
InParanoidiP09099.
KOiK00854.
OMAiEITGNLM.
OrthoDBiEOG6S52KR.
PhylomeDBiP09099.

Family and domain databases

InterProiIPR018485. Carb_kinase_FGGY_C.
IPR018483. Carb_kinase_FGGY_CS.
IPR018484. Carb_kinase_FGGY_N.
IPR006000. Xylulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01312. XylB. 1 hit.
PROSITEiPS00933. FGGY_KINASES_1. 1 hit.
PS00445. FGGY_KINASES_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P09099-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYIGIDLGTS GVKVILLNEQ GEVVAAQTEK LTVSRPHPLW SEQDPEQWWQ
60 70 80 90 100
ATDRAMKALG DQHSLQDVKA LGIAGQMHGA TLLDAQQRVL RPAILWNDGR
110 120 130 140 150
CAQECTLLEA RVPQSRVITG NLMMPGFTAP KLLWVQRHEP EIFRQIDKVL
160 170 180 190 200
LPKDYLRLRM TGEFASDMSD AAGTMWLDVA KRDWSDVMLQ ACDLSRDQMP
210 220 230 240 250
ALYEGSEITG ALLPEVAKAW GMATVPVVAG GGDNAAGAVG VGMVDANQAM
260 270 280 290 300
LSLGTSGVYF AVSEGFLSKP ESAVHSFCHA LPQRWHLMSV MLSAASCLDW
310 320 330 340 350
AAKLTGLSNV PALIAAAQQA DESAEPVWFL PYLSGERTPH NNPQAKGVFF
360 370 380 390 400
GLTHQHGPNE LARAVLEGVG YALADGMDVV HACGIKPQSV TLIGGGARSE
410 420 430 440 450
YWRQMLADIS GQQLDYRTGG DVGPALGAAR LAQIAANPEK SLIELLPQLP
460 470 480
LEQSHLPDAQ RYAAYQPRRE TFRRLYQQLL PLMA
Length:484
Mass (Da):52,618
Last modified:July 1, 1989 - v1
Checksum:i8CC62CBD546AFCA0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K01996 Genomic DNA. Translation: AAA24769.1.
X04691 Genomic DNA. Translation: CAA28395.1.
U00039 Genomic DNA. Translation: AAB18541.1.
U00096 Genomic DNA. Translation: AAC76588.1.
AP009048 Genomic DNA. Translation: BAE77729.1.
PIRiA30266. KIECXY.
RefSeqiNP_418021.1. NC_000913.3.
YP_491870.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76588; AAC76588; b3564.
BAE77729; BAE77729; BAE77729.
GeneIDi12933545.
948133.
KEGGiecj:Y75_p3611.
eco:b3564.
PATRICi32122604. VBIEscCol129921_3679.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K01996 Genomic DNA. Translation: AAA24769.1 .
X04691 Genomic DNA. Translation: CAA28395.1 .
U00039 Genomic DNA. Translation: AAB18541.1 .
U00096 Genomic DNA. Translation: AAC76588.1 .
AP009048 Genomic DNA. Translation: BAE77729.1 .
PIRi A30266. KIECXY.
RefSeqi NP_418021.1. NC_000913.3.
YP_491870.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2ITM X-ray 2.10 A/B 1-484 [» ]
2NLX X-ray 2.70 A/B 1-484 [» ]
ProteinModelPortali P09099.
SMRi P09099. Positions 1-484.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P09099. 1 interaction.
STRINGi 511145.b3564.

Proteomic databases

PRIDEi P09099.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC76588 ; AAC76588 ; b3564 .
BAE77729 ; BAE77729 ; BAE77729 .
GeneIDi 12933545.
948133.
KEGGi ecj:Y75_p3611.
eco:b3564.
PATRICi 32122604. VBIEscCol129921_3679.

Organism-specific databases

EchoBASEi EB1068.
EcoGenei EG11075. xylB.

Phylogenomic databases

eggNOGi COG1070.
HOGENOMi HOG000222138.
InParanoidi P09099.
KOi K00854.
OMAi EITGNLM.
OrthoDBi EOG6S52KR.
PhylomeDBi P09099.

Enzyme and pathway databases

BioCyci EcoCyc:XYLULOKIN-MONOMER.
ECOL316407:JW3536-MONOMER.
MetaCyc:XYLULOKIN-MONOMER.
RETL1328306-WGS:GSTH-3723-MONOMER.

Miscellaneous databases

EvolutionaryTracei P09099.
PROi P09099.

Gene expression databases

Genevestigatori P09099.

Family and domain databases

InterProi IPR018485. Carb_kinase_FGGY_C.
IPR018483. Carb_kinase_FGGY_CS.
IPR018484. Carb_kinase_FGGY_N.
IPR006000. Xylulokinase.
[Graphical view ]
Pfami PF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01312. XylB. 1 hit.
PROSITEi PS00933. FGGY_KINASES_1. 1 hit.
PS00445. FGGY_KINASES_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli."
    Lawlis V.B., Dennis M.S., Chen E.Y., Smith D.H., Henner D.J.
    Appl. Environ. Microbiol. 47:15-21(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / MM294 / ATCC 33625 / DSM 5208.
  2. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Escherichia coli proteome analysis using the gene-protein database."
    VanBogelen R.A., Abshire K.Z., Moldover B., Olson E.R., Neidhardt F.C.
    Electrophoresis 18:1243-1251(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY 2D-GEL.

Entry informationi

Entry nameiXYLB_ECOLI
AccessioniPrimary (citable) accession number: P09099
Secondary accession number(s): Q2M7M7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: July 1, 1989
Last modified: November 26, 2014
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3