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P08767 (VGF_BPAL3) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
F protein
GPF
Gene names
Name:F
OrganismEnterobacteria phage alpha3 (Bacteriophage alpha-3) [Complete proteome]
Taxonomic identifier10849 [NCBI]
Taxonomic lineageViruses › ssDNA viruses › Microviridae › Microvirus ›
Virus hostEscherichia coli [TaxID: 562]

Protein attributes

Sequence length431 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

F protein is the major capsid component.

Subunit structure

The virion is composed of 60 copies each of the F, G, and J proteins, and 12 copies of the H protein.

Subcellular location

Virion Potential.

Ontologies

Keywords
   Cellular componentVirion
   Molecular functionCapsid protein
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Cellular_componentviral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 431431Capsid protein
PRO_0000164887

Secondary structure

1 ........................................................................ 431
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P08767 [UniParc].

Last modified July 1, 1993. Version 2.
Checksum: 72B2ED90676E81C5

FASTA43149,337
        10         20         30         40         50         60 
MSNVQTSAER EIVDLSHLAF DCGMLGRLKT VSWTPVIAGD SFELDAVGAL RLSPLRRGLA 

        70         80         90        100        110        120 
IDSKVDFFTF YIPHRHVYGD QWIQFMRDGV NAQPLPSVTC NRYPDHAGYV GTIVPANNRI 

       130        140        150        160        170        180 
PKFLHQSYLN IYNNYFRAPW MPERTEANPS NLNEDDARYR FRCCHLKNIW SAPLPPETKL 

       190        200        210        220        230        240 
AEEMGIESNS IDIMGLQAAY AQLHTEQERT YFMQRYRDVI SSFGGSTSYD ADNRPLLVMH 

       250        260        270        280        290        300 
TDFWASGYDV DGTDQSSLGQ FSGRVQQTFK HSVPRFFVPE HGVMMTLALI RFPPISPLEH 

       310        320        330        340        350        360 
HYLAGKSQLT YTDLAGDPAL IGNLPPREIS YRDLFRDGRS GIKIKVAESI WYRTHPDYVN 

       370        380        390        400        410        420 
FKYHDLHGFP FLDDAPGTST GDNLQEAILV RHQDYDACFQ SQQLLQWNKQ ARYNVSVYRH 

       430 
MPTVRDSIMT S

« Hide

References

[1]"Nucleotide sequence of the genome of the bacteriophage alpha 3: interrelationship of the genome structure and the gene products with those of the phages, phi X174, G4 and phi K."
Kodaira K., Nakano K., Okada S., Taketo A.
Biochim. Biophys. Acta 1130:277-288(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Isolation and some properties of bacteriophage alpha3 gene J mutant."
Kodaira K., Taketo A.
Mol. Gen. Genet. 195:541-543(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-13.
+Additional computationally mapped references.

Web resources

Virus Particle ExploreR db

Icosahedral capsid structure

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		X60322 Genomic DNA. Translation: CAA42881.1.
X00774 Genomic DNA. Translation: CAA25350.1.
PIRS22330.
RefSeqNP_039597.1. NC_001330.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1M06X-ray3.50F1-431[»]
1M0Felectron microscopy16.00F1-431[»]
1RB8X-ray3.50F1-431[»]
ProteinModelPortalP08767.
SMRP08767. Positions 10-431.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1260697.

Phylogenomic databases

ProtClustDBPHA0009.

Family and domain databases

Gene3D2.60.169.10. 1 hit.
InterProIPR016184. Capsid/spike_ssDNA_virus.
IPR003514. Microviridae_protein_F.
[Graphical view]
PfamPF02305. Phage_F. 2 hits.
[Graphical view]
SUPFAMSSF88645. Capsid/spike_ssDNA_virus. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP08767.

Entry information

Entry nameVGF_BPAL3
AccessionPrimary (citable) accession number: P08767
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1988
Last sequence update: July 1, 1993
Last modified: May 1, 2013
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

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