P08651 (NFIC_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 143.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nuclear factor 1 C-type Short name=NF1-C Short name=Nuclear factor 1/C Alternative name(s): CCAAT-box-binding transcription factor Short name=CTF Nuclear factor I/C Short name=NF-I/C Short name=NFI-C TGGCA-binding protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 508 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. |
| Subunit structure | Binds DNA as a homodimer. |
| Subcellular location | |
| Sequence similarities | Belongs to the CTF/NF-I family. Contains 1 CTF/NF-I DNA-binding domain. |
Ontologies
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 4 (identifier: P08651-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: P08651-2) The sequence of this isoform differs from the canonical sequence as follows: 1-10: MYSSPLCLTQ → M | ||||||
| Isoform 2 (identifier: P08651-3) The sequence of this isoform differs from the canonical sequence as follows: 1-10: MYSSPLCLTQ → M 424-439: LNGSGQLKMPSHCLSA → PTLRPTRPLQTVPLWD 440-508: Missing. | ||||||
| Isoform 3 (identifier: P08651-4) The sequence of this isoform differs from the canonical sequence as follows: 1-10: MYSSPLCLTQ → M 188-211: Missing. 424-439: LNGSGQLKMPSHCLSA → PTLRPTRPLQTVPLWD 440-508: Missing. | ||||||
| Isoform 5 (identifier: P08651-5) The sequence of this isoform differs from the canonical sequence as follows: 424-503: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 508 | 508 | Nuclear factor 1 C-type | PRO_0000100199 | |||||
Regions | |||||||||
| DNA binding | 1 – 195 | 195 | CTF/NF-I | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1 | 1 | N-acetylmethionine Ref.12 | ||||||
| Modified residue | 194 | 1 | Phosphoserine Ref.12 | ||||||
| Modified residue | 294 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 323 | 1 | Phosphoserine Ref.10 Ref.12 | ||||||
| Modified residue | 333 | 1 | Phosphoserine Ref.7 Ref.10 Ref.11 Ref.12 | ||||||
| Modified residue | 337 | 1 | Phosphoserine Ref.12 | ||||||
| Modified residue | 339 | 1 | Phosphoserine Ref.10 Ref.12 | ||||||
| Modified residue | 343 | 1 | Phosphoserine Ref.8 Ref.12 | ||||||
| Modified residue | 378 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 487 | 1 | Phosphoserine Ref.12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 10 | 10 | MYSSPLCLTQ → M in isoform 1, isoform 2 and isoform 3. | VSP_003552 | |||||
| Alternative sequence | 188 – 211 | 24 | Missing in isoform 3. | VSP_003553 | |||||
| Alternative sequence | 424 – 503 | 80 | Missing in isoform 5. | VSP_003554 | |||||
| Alternative sequence | 424 – 439 | 16 | LNGSG…HCLSA → PTLRPTRPLQTVPLWD in isoform 2 and isoform 3. | VSP_003555 | |||||
| Alternative sequence | 440 – 508 | 69 | Missing in isoform 2 and isoform 3. | VSP_003556 | |||||
| Natural variant | 417 | 1 | A → S. Corresponds to variant rs10412720 [ dbSNP | Ensembl ]. | VAR_057656 | |||||
Experimental info | |||||||||
| Sequence conflict | 212 | 1 | D → V in CAA63440. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A family of human CCAAT-box-binding proteins active in transcription and DNA replication: cloning and expression of multiple cDNAs." Santoro C., Mermod N., Andrews P.C., Tjian R. Nature 334:218-224(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), PARTIAL PROTEIN SEQUENCE. |
| [2] | "CTF5 -- a new transcriptional activator of the NFI/CTF family." Wenzelides S., Altmann S., Wendler W., Winnacker E.L. Nucleic Acids Res. 24:2416-2421(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5). |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: Caudate nucleus and Uterus. |
| [4] | "The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. Lucas S.M.Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5). Tissue: Uterus. |
| [7] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-333, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-343, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-294; SER-323; SER-333 AND SER-339, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-333, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [12] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-194; SER-323; SER-333; SER-337; SER-339; SER-343 AND SER-487, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X12492 mRNA. Translation: CAA31012.1. X92857 mRNA. Translation: CAA63440.1. AK289885 mRNA. Translation: BAF82574.1. AK304816 mRNA. Translation: BAH14259.1. AC005514 Genomic DNA. Translation: AAC32593.1. AC005514 Genomic DNA. Translation: AAC32594.1. AC005551 Genomic DNA. Translation: AAC33190.1. AC005551 Genomic DNA. Translation: AAC33191.1. AC005551 Genomic DNA. Translation: AAC33192.1. AC005778 Genomic DNA. Translation: AAC62842.1. CH471139 Genomic DNA. Translation: EAW69325.1. CH471139 Genomic DNA. Translation: EAW69326.1. BC012120 mRNA. Translation: AAH12120.1. |
| IPI | IPI00029795. IPI00218037. IPI00218039. IPI00218041. IPI00941207. |
| PIR | B33416. S01038. |
| RefSeq | NP_001231931.1. NM_001245002.1. NP_001231933.1. NM_001245004.1. NP_001231934.1. NM_001245005.1. NP_005588.2. NM_005597.3. NP_995315.1. NM_205843.2. |
| UniGene | Hs.170131. |
3D structure databases | |
| ProteinModelPortal | P08651. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P08651. 5 interactions. |
| MINT | MINT-1439785. |
PTM databases | |
| PhosphoSite | P08651. |
Polymorphism databases | |
| DMDM | 14195672. |
Proteomic databases | |
| PaxDb | P08651. |
| PRIDE | P08651. |
Protocols and materials databases | |
| DNASU | 4782. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000341919; ENSP00000342194; ENSG00000141905. ENST00000346156; ENSP00000301935; ENSG00000141905. ENST00000395111; ENSP00000378543; ENSG00000141905. ENST00000443272; ENSP00000396843; ENSG00000141905. ENST00000586919; ENSP00000465177; ENSG00000141905. ENST00000589123; ENSP00000465655; ENSG00000141905. |
| GeneID | 4782. |
| KEGG | hsa:4782. |
| UCSC | uc002lxo.3. human. uc002lxp.3. human. uc010xhh.2. human. uc010xhi.2. human. |
Organism-specific databases | |
| CTD | 4782. |
| GeneCards | GC19P003310. |
| HGNC | HGNC:7786. NFIC. |
| HPA | CAB004300. CAB004674. |
| MIM | 600729. gene. |
| neXtProt | NX_P08651. |
| PharmGKB | PA31592. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG252172. |
| HOVERGEN | HBG006561. |
| KO | K09170. |
| PhylomeDB | P08651. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | hnf3apathway. FOXA1 transcription factor network. |
| SignaLink | P08651. |
Gene expression databases | |
| Bgee | P08651. |
| CleanEx | HS_NFIC. |
| Genevestigator | P08651. |
| GermOnline | ENSG00000141905. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000647. CTF/NFI. IPR020604. CTF/NFI_DNA-bd-dom. IPR019739. CTF/NFI_DNA-bd_CS. IPR019548. CTF/NFI_DNA-bd_N. IPR003619. MAD_homology1_Dwarfin-type. [Graphical view] |
| PANTHER | PTHR11492. PTHR11492. 1 hit. |
| Pfam | PF00859. CTF_NFI. 1 hit. PF03165. MH1. 1 hit. PF10524. NfI_DNAbd_pre-N. 1 hit. [Graphical view] |
| SMART | SM00523. DWA. 1 hit. [Graphical view] |
| PROSITE | PS00349. CTF_NFI_1. 1 hit. PS51080. CTF_NFI_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | NFIC. human. |
| GenomeRNAi | 4782. |
| NextBio | 18440. |
| SOURCE | Search... |
Entry information
| Entry name | NFIC_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P08651 Secondary accession number(s): A8K1H0 Q9UPK1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 19 Human chromosome 19: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
