ID FUMH_YEAST Reviewed; 488 AA. AC P08417; D6W3A8; Q08978; DT 01-AUG-1988, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1997, sequence version 2. DT 27-MAR-2024, entry version 217. DE RecName: Full=Fumarate hydratase, mitochondrial; DE Short=Fumarase {ECO:0000303|PubMed:3040736}; DE EC=4.2.1.2 {ECO:0000269|PubMed:11585823, ECO:0000269|PubMed:20231875, ECO:0000269|PubMed:3040736}; DE Flags: Precursor; GN Name=FUM1 {ECO:0000303|PubMed:3040736, ECO:0000312|SGD:S000006183}; GN OrderedLocusNames=YPL262W; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND SUBCELLULAR LOCATION. RX PubMed=3040736; DOI=10.1016/s0021-9258(18)45347-1; RA Wu M., Tzagoloff A.; RT "Mitochondrial and cytoplasmic fumarases in Saccharomyces cerevisiae are RT encoded by a single nuclear gene FUM1."; RL J. Biol. Chem. 262:12275-12282(1987). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169875; RA Bussey H., Storms R.K., Ahmed A., Albermann K., Allen E., Ansorge W., RA Araujo R., Aparicio A., Barrell B.G., Badcock K., Benes V., Botstein D., RA Bowman S., Brueckner M., Carpenter J., Cherry J.M., Chung E., RA Churcher C.M., Coster F., Davis K., Davis R.W., Dietrich F.S., Delius H., RA DiPaolo T., Dubois E., Duesterhoeft A., Duncan M., Floeth M., Fortin N., RA Friesen J.D., Fritz C., Goffeau A., Hall J., Hebling U., Heumann K., RA Hilbert H., Hillier L.W., Hunicke-Smith S., Hyman R.W., Johnston M., RA Kalman S., Kleine K., Komp C., Kurdi O., Lashkari D., Lew H., Lin A., RA Lin D., Louis E.J., Marathe R., Messenguy F., Mewes H.-W., Mirtipati S., RA Moestl D., Mueller-Auer S., Namath A., Nentwich U., Oefner P., Pearson D., RA Petel F.X., Pohl T.M., Purnelle B., Rajandream M.A., Rechmann S., RA Rieger M., Riles L., Roberts D., Schaefer M., Scharfe M., Scherens B., RA Schramm S., Schroeder M., Sdicu A.-M., Tettelin H., Urrestarazu L.A., RA Ushinsky S., Vierendeels F., Vissers S., Voss H., Walsh S.V., Wambutt R., RA Wang Y., Wedler E., Wedler H., Winnett E., Zhong W.-W., Zollner A., RA Vo D.H., Hani J.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI."; RL Nature 387:103-105(1997). RN [3] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [4] RP PROTEIN SEQUENCE OF 25-29, FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR RP LOCATION, AND MUTAGENESIS OF MET-24; 24-MET-ASN-25 AND 29-ARG--LYS-44. RX PubMed=11585823; DOI=10.1074/jbc.m106061200; RA Sass E., Blachinsky E., Karniely S., Pines O.; RT "Mitochondrial and cytosolic isoforms of yeast fumarase are derivatives of RT a single translation product and have identical amino termini."; RL J. Biol. Chem. 276:46111-46117(2001). RN [5] RP PROTEIN SEQUENCE OF 44-52, AND SUBCELLULAR LOCATION. RC STRAIN=ATCC 201238 / W303-1B; RX PubMed=11502169; DOI=10.1021/bi010277r; RA Grandier-Vazeille X., Bathany K., Chaignepain S., Camougrand N., Manon S., RA Schmitter J.-M.; RT "Yeast mitochondrial dehydrogenases are associated in a supramolecular RT complex."; RL Biochemistry 40:9758-9769(2001). RN [6] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=1587456; DOI=10.1016/0378-1097(92)90667-d; RA Kaclikova E., Lachowicz T.M., Gbelska Y., Subik J.; RT "Fumaric acid overproduction in yeast mutants deficient in fumarase."; RL FEMS Microbiol. Lett. 70:101-106(1992). RN [7] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-428, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC STRAIN=ATCC 76625 / YPH499; RX PubMed=17761666; DOI=10.1074/mcp.m700098-mcp200; RA Reinders J., Wagner K., Zahedi R.P., Stojanovski D., Eyrich B., RA van der Laan M., Rehling P., Sickmann A., Pfanner N., Meisinger C.; RT "Profiling phosphoproteins of yeast mitochondria reveals a role of RT phosphorylation in assembly of the ATP synthase."; RL Mol. Cell. Proteomics 6:1896-1906(2007). RN [9] RP FUNCTION, CATALYTIC ACTIVITY, PATHWAY, SUBCELLULAR LOCATION, AND RP MUTAGENESIS OF HIS-154. RX PubMed=20231875; DOI=10.1371/journal.pbio.1000328; RA Yogev O., Yogev O., Singer E., Shaulian E., Goldberg M., Fox T.D., RA Pines O.; RT "Fumarase: a mitochondrial metabolic enzyme and a cytosolic/nuclear RT component of the DNA damage response."; RL PLoS Biol. 8:E1000328-E1000328(2010). RN [10] RP X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS), AND SUBUNIT. RX PubMed=9665847; DOI=10.1006/jmbi.1998.1862; RA Weaver T., Lees M., Zaitsev V., Zaitseva I., Duke E., Lindley P., RA McSweeny S., Svensson A., Keruchenko J., Keruchenko I., Gladilin K., RA Banaszak L.; RT "Crystal structures of native and recombinant yeast fumarase."; RL J. Mol. Biol. 280:431-442(1998). CC -!- FUNCTION: Catalyzes the reversible stereospecific interconversion of CC fumarate to L-malate (PubMed:3040736, PubMed:11585823, PubMed:1587456, CC PubMed:20231875). In mitochondrion, catalyzes the hydration of fumarate CC to L-malate in the tricarboxylic acid (TCA) cycle to facilitate a CC transition step in the production of energy in the form of NADH CC (PubMed:1587456, PubMed:20231875). In cytoplasm and nucleus, involved CC in DNA repair in response to DNA damage: following DNA double-strand CC breaks (DSBs), translocates from the cytosol to the nucleus and CC promotes DNA repair by catalyzing the dehydration of L-malate to CC fumarate (PubMed:20231875). {ECO:0000269|PubMed:11585823, CC ECO:0000269|PubMed:1587456, ECO:0000269|PubMed:20231875, CC ECO:0000269|PubMed:3040736}. CC -!- CATALYTIC ACTIVITY: CC Reaction=(S)-malate = fumarate + H2O; Xref=Rhea:RHEA:12460, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15589, ChEBI:CHEBI:29806; EC=4.2.1.2; CC Evidence={ECO:0000269|PubMed:11585823, ECO:0000269|PubMed:20231875, CC ECO:0000269|PubMed:3040736}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:12461; CC Evidence={ECO:0000269|PubMed:20231875}; CC PhysiologicalDirection=right-to-left; Xref=Rhea:RHEA:12462; CC Evidence={ECO:0000269|PubMed:20231875}; CC -!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; (S)-malate CC from fumarate: step 1/1. {ECO:0000269|PubMed:20231875}. CC -!- SUBUNIT: Homotetramer. {ECO:0000269|PubMed:9665847}. CC -!- SUBCELLULAR LOCATION: Mitochondrion matrix CC {ECO:0000269|PubMed:11502169, ECO:0000269|PubMed:11585823, CC ECO:0000269|PubMed:20231875, ECO:0000269|PubMed:3040736}. Cytoplasm CC {ECO:0000269|PubMed:11502169, ECO:0000269|PubMed:11585823, CC ECO:0000269|PubMed:20231875, ECO:0000269|PubMed:3040736}. Nucleus CC {ECO:0000269|PubMed:20231875}. Note=Mitochondrial, cytoplasmic and CC nuclear forms are derived from a single translation product and not by CC alternative initiation of the transcript (PubMed:11585823). The CC mitochondrial transit peptide is cleaved by the mitochondrial CC processing peptidase, promoting mitochondrial targeting of around 70% CC of the proteins (PubMed:11585823). The remaining 30% of the processed CC proteins localize in the cytosol: they probably undergo rapid folding CC into an import-incompetent state, leading to retrograde movement of the CC processed proteins back to the cytosol through the translocation pore CC (PubMed:11585823). Translocates from the cytosol to the nucleus in CC response to DNA damage (PubMed:20231875). {ECO:0000269|PubMed:11585823, CC ECO:0000269|PubMed:20231875}. CC -!- DISRUPTION PHENOTYPE: Cells accumulate extracellular fumarate. CC {ECO:0000269|PubMed:1587456}. CC -!- MISCELLANEOUS: Present with 6920 molecules/cell in log phase SD medium. CC {ECO:0000269|PubMed:14562106}. CC -!- MISCELLANEOUS: There are 2 substrate-binding sites: the catalytic A CC site, and the non-catalytic B site that may play a role in the transfer CC of substrate or product between the active site and the solvent. CC Alternatively, the B site may bind allosteric effectors. CC {ECO:0000250|UniProtKB:P05042, ECO:0000250|UniProtKB:P9WN93}. CC -!- SIMILARITY: Belongs to the class-II fumarase/aspartase family. Fumarase CC subfamily. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; J02802; AAA66909.1; -; Genomic_DNA. DR EMBL; Z73618; CAA97997.1; -; Genomic_DNA. DR EMBL; BK006949; DAA11174.1; -; Genomic_DNA. DR PIR; S65295; UFBYM. DR RefSeq; NP_015061.1; NM_001184076.1. DR PDB; 1YFM; X-ray; 2.60 A; A=1-488. DR PDBsum; 1YFM; -. DR AlphaFoldDB; P08417; -. DR SMR; P08417; -. DR BioGRID; 35951; 451. DR DIP; DIP-6451N; -. DR IntAct; P08417; 12. DR MINT; P08417; -. DR STRING; 4932.YPL262W; -. DR iPTMnet; P08417; -. DR MaxQB; P08417; -. DR PaxDb; 4932-YPL262W; -. DR PeptideAtlas; P08417; -. DR EnsemblFungi; YPL262W_mRNA; YPL262W; YPL262W. DR GeneID; 855866; -. DR KEGG; sce:YPL262W; -. DR AGR; SGD:S000006183; -. DR SGD; S000006183; FUM1. DR VEuPathDB; FungiDB:YPL262W; -. DR eggNOG; KOG1317; Eukaryota. DR GeneTree; ENSGT00950000183122; -. DR HOGENOM; CLU_021594_4_0_1; -. DR InParanoid; P08417; -. DR OMA; PADRYFG; -. DR OrthoDB; 1341425at2759; -. DR BioCyc; YEAST:YPL262W-MONOMER; -. DR BRENDA; 4.2.1.2; 984. DR Reactome; R-SCE-71403; Citric acid cycle (TCA cycle). DR SABIO-RK; P08417; -. DR UniPathway; UPA00223; UER01007. DR BioGRID-ORCS; 855866; 10 hits in 10 CRISPR screens. DR EvolutionaryTrace; P08417; -. DR PRO; PR:P08417; -. DR Proteomes; UP000002311; Chromosome XVI. DR RNAct; P08417; Protein. DR GO; GO:0005829; C:cytosol; IDA:UniProtKB. DR GO; GO:0005759; C:mitochondrial matrix; IDA:SGD. DR GO; GO:0005739; C:mitochondrion; IDA:UniProtKB. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0045239; C:tricarboxylic acid cycle enzyme complex; IEA:InterPro. DR GO; GO:0004333; F:fumarate hydratase activity; IDA:UniProtKB. DR GO; GO:0006974; P:DNA damage response; IDA:UniProtKB. DR GO; GO:0006302; P:double-strand break repair; IDA:UniProtKB. DR GO; GO:0006106; P:fumarate metabolic process; IDA:UniProtKB. DR GO; GO:0006108; P:malate metabolic process; IBA:GO_Central. DR GO; GO:0006099; P:tricarboxylic acid cycle; IMP:SGD. DR CDD; cd01362; Fumarase_classII; 1. DR Gene3D; 1.10.40.30; Fumarase/aspartase (C-terminal domain); 1. DR Gene3D; 1.20.200.10; Fumarase/aspartase (Central domain); 1. DR Gene3D; 1.10.275.10; Fumarase/aspartase (N-terminal domain); 1. DR HAMAP; MF_00743; FumaraseC; 1. DR InterPro; IPR005677; Fum_hydII. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR018951; Fumarase_C_C. DR InterPro; IPR020557; Fumarate_lyase_CS. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR NCBIfam; TIGR00979; fumC_II; 1. DR PANTHER; PTHR11444; ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; 1. DR PANTHER; PTHR11444:SF1; FUMARATE HYDRATASE, MITOCHONDRIAL; 1. DR Pfam; PF10415; FumaraseC_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SUPFAM; SSF48557; L-aspartase-like; 1. DR PROSITE; PS00163; FUMARATE_LYASES; 1. PE 1: Evidence at protein level; KW 3D-structure; Cytoplasm; Direct protein sequencing; DNA damage; DNA repair; KW Lyase; Mitochondrion; Nucleus; Phosphoprotein; Reference proteome; KW Transit peptide; Tricarboxylic acid cycle. FT TRANSIT 1..24 FT /note="Mitochondrion" FT /evidence="ECO:0000269|PubMed:11585823" FT CHAIN 25..488 FT /note="Fumarate hydratase, mitochondrial" FT /id="PRO_0000010333" FT ACT_SITE 213 FT /note="Proton donor/acceptor" FT /evidence="ECO:0000250|UniProtKB:P05042" FT ACT_SITE 343 FT /evidence="ECO:0000250|UniProtKB:P9WN93" FT BINDING 124..126 FT /ligand="substrate" FT /evidence="ECO:0000250|UniProtKB:P05042" FT BINDING 154..157 FT /ligand="substrate" FT /note="in site B" FT /evidence="ECO:0000250|UniProtKB:P05042" FT BINDING 164..166 FT /ligand="substrate" FT /evidence="ECO:0000250|UniProtKB:P05042" FT BINDING 212 FT /ligand="substrate" FT /evidence="ECO:0000250|UniProtKB:P9WN93" FT BINDING 344 FT /ligand="substrate" FT /evidence="ECO:0000250|UniProtKB:P9WN93" FT BINDING 349..351 FT /ligand="substrate" FT /evidence="ECO:0000250|UniProtKB:P9WN93" FT SITE 356 FT /note="Important for catalytic activity" FT /evidence="ECO:0000250|UniProtKB:P05042" FT MOD_RES 428 FT /note="Phosphothreonine" FT /evidence="ECO:0007744|PubMed:17761666" FT MUTAGEN 24..25 FT /note="MN->SF: Does not affect processing by the FT mitochondrial processing peptidase. Localizes both in the FT mitochondrion and cytosol. Exhibits high fumarate hydratase FT activity." FT /evidence="ECO:0000269|PubMed:11585823" FT MUTAGEN 24 FT /note="M->S: Does not affect processing by the FT mitochondrial processing peptidase. Localizes both in the FT mitochondrion and cytosol. Exhibits high fumarate hydratase FT activity." FT /evidence="ECO:0000269|PubMed:11585823" FT MUTAGEN 24 FT /note="M->V,I: Abolishes processing by the mitochondrial FT processing peptidase. Mainly localizes in the cytosol, with FT a small fraction in the mitochondrion. Reduced fumarate FT hydratase activity." FT /evidence="ECO:0000269|PubMed:11585823" FT MUTAGEN 29..44 FT /note="Missing: Does not affect subcellular location." FT /evidence="ECO:0000269|PubMed:11585823" FT MUTAGEN 154 FT /note="H->R: Abolished fumarate hydratase activity and FT ability to participate in DNA repair." FT /evidence="ECO:0000269|PubMed:20231875" FT CONFLICT 173 FT /note="M -> V (in Ref. 1; AAA66909)" FT /evidence="ECO:0000305" FT CONFLICT 289 FT /note="K -> R (in Ref. 1; AAA66909)" FT /evidence="ECO:0000305" FT CONFLICT 392 FT /note="A -> V (in Ref. 1; AAA66909)" FT /evidence="ECO:0000305" FT STRAND 28..31 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 33..35 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 38..43 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 48..54 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 61..64 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 68..87 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 93..107 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 112..114 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 118..121 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 126..142 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 155..159 FT /evidence="ECO:0007829|PDB:1YFM" FT TURN 160..162 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 165..182 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 185..202 FT /evidence="ECO:0007829|PDB:1YFM" FT TURN 203..205 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 207..212 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 215..221 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 222..247 FT /evidence="ECO:0007829|PDB:1YFM" FT TURN 255..257 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 267..279 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 289..294 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 297..323 FT /evidence="ECO:0007829|PDB:1YFM" FT STRAND 327..330 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 353..377 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 387..411 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 413..415 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 420..429 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 432..434 FT /evidence="ECO:0007829|PDB:1YFM" FT TURN 435..437 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 438..440 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 443..456 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 460..466 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 472..478 FT /evidence="ECO:0007829|PDB:1YFM" FT HELIX 481..483 FT /evidence="ECO:0007829|PDB:1YFM" SQ SEQUENCE 488 AA; 53152 MW; C099A02409A210E6 CRC64; MLRFTNCSCK TFVKSSYKLN IRRMNSSFRT ETDAFGEIHV PADKYWGAQT QRSFQNFKIG GARERMPLPL VHAFGVLKKS AAIVNESLGG LDPKISKAIQ QAADEVASGK LDDHFPLVVF QTGSGTQSNM NANEVISNRA IEILGGKIGS KQVHPNNHCN QSQSSNDTFP TVMHIAASLQ IQNELIPELT NLKNALEAKS KEFDHIVKIG RTHLQDATPL TLGQEFSGYV QQVENGIQRV AHSLKTLSFL AQGGTAVGTG LNTKPGFDVK IAEQISKETG LKFQTAPNKF EALAAHDAIV ECSGALNTLA CSLFKIAQDI RYLGSGPRCG YHELMLPENE PGSSIMPGKV NPTQNEALTQ VCVQVMGNNA AITFAGSQGQ FELNVFKPVM IANLLNSIRL ITDAAYSFRV HCVEGIKANE PRIHELLTKS LMLVTALNPK IGYDAASKVA KNAHKKGITL KESALELGVL TEKEFDEWVV PEHMLGPK //