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Protein

USG-1 protein

Gene

usg

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11059-MONOMER.
ECOL316407:JW2316-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
USG-1 protein
Gene namesi
Name:usg
Ordered Locus Names:b2319, JW2316
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11059. usg.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 337337USG-1 proteinPRO_0000141402Add
BLAST

Proteomic databases

EPDiP08390.
PaxDbiP08390.
PRIDEiP08390.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
defP0A6K31EBI-548921,EBI-548913

Protein-protein interaction databases

DIPiDIP-11095N.
IntActiP08390. 17 interactions.
MINTiMINT-1222362.
STRINGi511145.b2319.

Structurei

3D structure databases

ProteinModelPortaliP08390.
SMRiP08390. Positions 2-336.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105CM3. Bacteria.
COG0136. LUCA.
HOGENOMiHOG000013357.
InParanoidiP08390.
OMAiSCVQSPV.
OrthoDBiEOG6JB158.
PhylomeDBiP08390.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR012080. Asp_semialdehyde_DH.
IPR016040. NAD(P)-bd_dom.
IPR000534. Semialdehyde_DH_NAD-bd.
IPR012280. Semialdhyde_DH_dimer_dom.
[Graphical view]
PfamiPF01118. Semialdhyde_dh. 1 hit.
PF02774. Semialdhyde_dhC. 1 hit.
[Graphical view]
PIRSFiPIRSF000148. ASA_dh. 1 hit.
SMARTiSM00859. Semialdhyde_dh. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

P08390-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEGWNIAVL GATGAVGEAL LETLAERQFP VGEIYALARN ESAGEQLRFG
60 70 80 90 100
GKTITVQDAA EFDWTQAQLA FFVAGKEATA AWVEEATNSG CLVIDSSGLF
110 120 130 140 150
ALEPDVPLVV PEVNPFVLTD YRNRNVIAVP DSLTSQLLAA LKPLIDQGGL
160 170 180 190 200
SRISVTSLIS ASAQGKKAVD ALAGQSAKLL NGIPIDEEDF FGRQLAFNML
210 220 230 240 250
PLLPDSEGSV REERRIVDEV RKILQDEGLM ISASVVQAPV FYGHAQMVNF
260 270 280 290 300
EALRPLAAEE ARDAFVQGED IVLSEENEFP TQVGDASGTP HLSVGCVRND
310 320 330
YGMPEQVQFW SVADNVRFGG ALMAVKIAEK LVQEYLY
Length:337
Mass (Da):36,364
Last modified:August 1, 1988 - v1
Checksum:iDF399045C50AE3C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02743 Genomic DNA. Translation: CAA26521.1.
U00096 Genomic DNA. Translation: AAC75379.1.
AP009048 Genomic DNA. Translation: BAA16176.1.
M15541 Genomic DNA. Translation: AAA24311.1.
M15542 Genomic DNA. Translation: AAA24312.1.
M29962 Genomic DNA. Translation: AAA24309.1.
PIRiA23792. QQECH3.
RefSeqiNP_416822.1. NC_000913.3.
WP_001289167.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75379; AAC75379; b2319.
BAA16176; BAA16176; BAA16176.
GeneIDi946797.
KEGGiecj:JW2316.
eco:b2319.
PATRICi32120009. VBIEscCol129921_2414.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02743 Genomic DNA. Translation: CAA26521.1.
U00096 Genomic DNA. Translation: AAC75379.1.
AP009048 Genomic DNA. Translation: BAA16176.1.
M15541 Genomic DNA. Translation: AAA24311.1.
M15542 Genomic DNA. Translation: AAA24312.1.
M29962 Genomic DNA. Translation: AAA24309.1.
PIRiA23792. QQECH3.
RefSeqiNP_416822.1. NC_000913.3.
WP_001289167.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP08390.
SMRiP08390. Positions 2-336.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-11095N.
IntActiP08390. 17 interactions.
MINTiMINT-1222362.
STRINGi511145.b2319.

Proteomic databases

EPDiP08390.
PaxDbiP08390.
PRIDEiP08390.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75379; AAC75379; b2319.
BAA16176; BAA16176; BAA16176.
GeneIDi946797.
KEGGiecj:JW2316.
eco:b2319.
PATRICi32120009. VBIEscCol129921_2414.

Organism-specific databases

EchoBASEiEB1052.
EcoGeneiEG11059. usg.

Phylogenomic databases

eggNOGiENOG4105CM3. Bacteria.
COG0136. LUCA.
HOGENOMiHOG000013357.
InParanoidiP08390.
OMAiSCVQSPV.
OrthoDBiEOG6JB158.
PhylomeDBiP08390.

Enzyme and pathway databases

BioCyciEcoCyc:EG11059-MONOMER.
ECOL316407:JW2316-MONOMER.

Miscellaneous databases

PROiP08390.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR012080. Asp_semialdehyde_DH.
IPR016040. NAD(P)-bd_dom.
IPR000534. Semialdehyde_DH_NAD-bd.
IPR012280. Semialdhyde_DH_dimer_dom.
[Graphical view]
PfamiPF01118. Semialdhyde_dh. 1 hit.
PF02774. Semialdhyde_dhC. 1 hit.
[Graphical view]
PIRSFiPIRSF000148. ASA_dh. 1 hit.
SMARTiSM00859. Semialdhyde_dh. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural features of the hisT operon of Escherichia coli K-12."
    Arps P.J., Marvel C.C., Rubin B.C., Tolan D.A., Penhoet E.E., Winkler M.E.
    Nucleic Acids Res. 13:5297-5315(1985) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Structural analysis of the Escherichia coli K-12 hisT operon by using a kanamycin resistance cassette."
    Arps P.J., Winkler M.E.
    J. Bacteriol. 169:1061-1070(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-13 AND 329-337.
    Strain: K12.
  6. "Divergent transcription of pdxB and homology between the pdxB and serA gene products in Escherichia coli K-12."
    Schoenlein P.V., Roa B.B., Winkler M.E.
    J. Bacteriol. 171:6084-6092(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-27.
    Strain: K12.

Entry informationi

Entry nameiUSG_ECOLI
AccessioniPrimary (citable) accession number: P08390
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: March 16, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.