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Protein

Prepilin peptidase-dependent protein C

Gene

ppdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Not yet known.

Enzyme and pathway databases

BioCyciEcoCyc:EG11154-MONOMER.
ECOL316407:JW2791-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Prepilin peptidase-dependent protein C
Gene namesi
Name:ppdC
Synonyms:ygdA
Ordered Locus Names:b2823, JW2791
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11154. ppdC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Propeptidei1 – 1010By similarityPRO_0000024278
Chaini11 – 10797Prepilin peptidase-dependent protein CPRO_0000024279Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei11 – 111N-methylphenylalaninePROSITE-ProRule annotation

Keywords - PTMi

Methylation

Proteomic databases

PaxDbiP08372.

Interactioni

Protein-protein interaction databases

BioGridi4261796. 153 interactions.
STRINGi511145.b2823.

Structurei

3D structure databases

ProteinModelPortaliP08372.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105RVB. Bacteria.
COG4967. LUCA.
HOGENOMiHOG000124335.
KOiK02681.
OMAiQRTSMNS.
OrthoDBiEOG6P339W.

Family and domain databases

InterProiIPR022204. DUF3728.
IPR012902. N_methyl_site.
[Graphical view]
PfamiPF13544. N_methyl_2. 1 hit.
PF12528. T2SSppdC. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02532. IV_pilin_GFxxxE. 1 hit.
PROSITEiPS00409. PROKAR_NTER_METHYL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P08372-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASLKNQQG FSLPEVMLAM VLMVMIVTAL SGFQRTLMNS LASRNQYQQL
60 70 80 90 100
WRHGWQQTQL RAISPPANWQ VNRMQTSQAG CVSISVTLVS PGGREGEMTR

LHCPNRQ
Length:107
Mass (Da):12,004
Last modified:August 1, 1988 - v1
Checksum:iD4B939EF6591704B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03966 Genomic DNA. Translation: CAA27603.1.
U29581 Genomic DNA. Translation: AAB40470.1.
U00096 Genomic DNA. Translation: AAC75862.1.
AP009048 Genomic DNA. Translation: BAE76892.1.
PIRiE24137. QQEC12.
RefSeqiNP_417300.1. NC_000913.3.
WP_001276460.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75862; AAC75862; b2823.
BAE76892; BAE76892; BAE76892.
GeneIDi945797.
KEGGiecj:JW2791.
eco:b2823.
PATRICi32121064. VBIEscCol129921_2921.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03966 Genomic DNA. Translation: CAA27603.1.
U29581 Genomic DNA. Translation: AAB40470.1.
U00096 Genomic DNA. Translation: AAC75862.1.
AP009048 Genomic DNA. Translation: BAE76892.1.
PIRiE24137. QQEC12.
RefSeqiNP_417300.1. NC_000913.3.
WP_001276460.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP08372.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261796. 153 interactions.
STRINGi511145.b2823.

Proteomic databases

PaxDbiP08372.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75862; AAC75862; b2823.
BAE76892; BAE76892; BAE76892.
GeneIDi945797.
KEGGiecj:JW2791.
eco:b2823.
PATRICi32121064. VBIEscCol129921_2921.

Organism-specific databases

EchoBASEiEB1143.
EcoGeneiEG11154. ppdC.

Phylogenomic databases

eggNOGiENOG4105RVB. Bacteria.
COG4967. LUCA.
HOGENOMiHOG000124335.
KOiK02681.
OMAiQRTSMNS.
OrthoDBiEOG6P339W.

Enzyme and pathway databases

BioCyciEcoCyc:EG11154-MONOMER.
ECOL316407:JW2791-MONOMER.

Miscellaneous databases

PROiP08372.

Family and domain databases

InterProiIPR022204. DUF3728.
IPR012902. N_methyl_site.
[Graphical view]
PfamiPF13544. N_methyl_2. 1 hit.
PF12528. T2SSppdC. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02532. IV_pilin_GFxxxE. 1 hit.
PROSITEiPS00409. PROKAR_NTER_METHYL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region."
    Finch P.W., Wilson R.E., Brown K., Hickson I.D., Tomkinson A.E., Emmerson P.T.
    Nucleic Acids Res. 14:4437-4451(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes."
    Hobbs M., Mattick J.S.
    Mol. Microbiol. 10:233-243(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiPPDC_ECOLI
AccessioniPrimary (citable) accession number: P08372
Secondary accession number(s): Q2MA14
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: May 11, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.