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P08291

- POLG_CXB1J

UniProt

P08291 - POLG_CXB1J

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Protein
Genome polyprotein
Gene
N/A
Organism
Coxsackievirus B1 (strain Japan)
Status
Reviewed - Annotation score: 5 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein VP1: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome. Capsid protein VP1 mainly forms the vertices of the capsid. Capsid protein VP1 interacts with host cell receptor to provide virion attachment to target host cells. This attachment induces virion internalization. Tyrosine kinases are probably involved in the entry process. After binding to its receptor, the capsid undergoes conformational changes. Capsid protein VP1 N-terminus (that contains an amphipathic alpha-helix) and capsid protein VP4 are externalized. Together, they shape a pore in the host membrane through which viral genome is translocated to host cell cytoplasm. After genome has been released, the channel shrinks By similarity.
Capsid protein VP2: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.
Capsid protein VP3: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.
Capsid protein VP4: Lies on the inner surface of the capsid shell. After binding to the host receptor, the capsid undergoes conformational changes. Capsid protein VP4 is released, Capsid protein VP1 N-terminus is externalized, and together, they shape a pore in the host membrane through which the viral genome is translocated into the host cell cytoplasm. After genome has been released, the channel shrinks By similarity.
Capsid protein VP0: Component of immature procapsids, which is cleaved into capsid proteins VP4 and VP2 after maturation. Allows the capsid to remain inactive before the maturation step By similarity.
Protein 2A: Cysteine protease that cleaves viral polyprotein and specific host proteins. It is responsible for the cleavage between the P1 and P2 regions, first cleavage occurring in the polyprotein. Cleaves also the host translation initiation factor EIF4G1, in order to shut down the capped cellular mRNA translation. Inhibits the host nucleus-cytoplasm protein and RNA trafficking by cleaving host members of the nuclear pores By similarity.
Protein 2B: Plays an essential role in the virus replication cycle by acting as a viroporin. Creates a pore in the host reticulum endoplasmic and as a consequence releases Ca2+ in the cytoplasm of infected cell. In turn, high levels of cyctoplasmic calcium may trigger membrane trafficking and transport of viral ER-associated proteins to viroplasms, sites of viral genome replication By similarity.
Protein 2C: Induces and associates with structural rearrangements of intracellular membranes. Displays RNA-binding, nucleotide binding and NTPase activities. May play a role in virion morphogenesis and viral RNA encapsidation by interacting with the capsid protein VP3 By similarity.
Protein 3AB: Localizes the viral replication complex to the surface of membranous vesicles. Together with protein 3CD binds the Cis-Active RNA Element (CRE) which is involved in RNA synthesis initiation. Acts as a cofactor to stimulate the activity of 3D polymerase, maybe through a nucleid acid chaperone activity By similarity.
Protein 3A: Localizes the viral replication complex to the surface of membranous vesicles. It inhibits host cell endoplasmic reticulum-to-Golgi apparatus transport and causes the dissassembly of the Golgi complex, possibly through GBF1 interaction. This would result in depletion of MHC, trail receptors and IFN receptors at the host cell surface By similarity.
Viral protein genome-linked: acts as a primer for viral RNA replication and remains covalently bound to viral genomic RNA. VPg is uridylylated prior to priming replication into VPg-pUpU. The oriI viral genomic sequence may act as a template for this. The VPg-pUpU is then used as primer on the genomic RNA poly(A) by the RNA-dependent RNA polymerase to replicate the viral genome. VPg may be removed in the cytoplasm by an unknown enzyme termed "unlinkase". VPg is not cleaved off virion genomes because replicated genomic RNA are encapsidated at the site of replication By similarity.
Protein 3CD: Is involved in the viral replication complex and viral polypeptide maturation. It exhibits protease activity with a specificity and catalytic efficiency that is different from protease 3C. Protein 3CD lacks polymerase activity. The 3C domain in the context of protein 3CD may have an RNA binding activity By similarity.
Protease 3C: cleaves host DDX58/RIG-I and thus contributes to the inhibition of type I interferon production. Cleaves also host PABPC1 By similarity.
RNA-directed RNA polymerase: Replicates the viral genomic RNA on the surface of intracellular membranes. May form linear arrays of subunits that propagate along a strong head-to-tail interaction called interface-I. Covalently attaches UMP to a tyrosine of VPg, which is used to prime RNA synthesis. The positive stranded RNA genome is first replicated at virus induced membranous vesicles, creating a dsRNA genomic replication form. This dsRNA is then used as template to synthesize positive stranded RNA genomes. ss+RNA genomes are either translated, replicated or encapsidated By similarity.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).
Selective cleavage of Tyr-|-Gly bond in the picornavirus polyprotein.
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
NTP + H2O = NDP + phosphate.

Enzyme regulationi

RNA-directed RNA polymerase: replication or transcription is subject to high level of random mutations by the nucleotide analog ribavirin.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei69 – 702Cleavage; by autolysis Reviewed prediction
Sitei332 – 3332Cleavage; by Protease 3C Reviewed prediction
Active sitei869 – 8691For Protease 2A activity By similarity
Active sitei887 – 8871For Protease 2A activity By similarity
Active sitei958 – 9581For Protease 2A activity By similarity
Sitei998 – 9992Cleavage; by Protease 3C Reviewed prediction
Sitei1426 – 14272Cleavage; by Protease 3C Reviewed prediction
Sitei1515 – 15162Cleavage; by Protease 3C Reviewed prediction
Sitei1537 – 15382Cleavage; by Protease 3C Reviewed prediction
Active sitei1577 – 15771For Protease 3C activity Reviewed prediction
Active sitei1608 – 16081For Protease 3C activity Reviewed prediction
Active sitei1684 – 16841For Protease 3C activity By similarity
Sitei1720 – 17212Cleavage; by Protease 3C Reviewed prediction
Active sitei2049 – 20491For RdRp activity By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. RNA binding Source: UniProtKB-KW
  3. RNA helicase activity Source: InterPro
  4. RNA-directed RNA polymerase activity Source: UniProtKB-KW
  5. cysteine-type endopeptidase activity Source: InterPro
  6. ion channel activity Source: UniProtKB-KW
  7. structural molecule activity Source: InterPro

GO - Biological processi

  1. DNA replication Source: UniProtKB-KW
  2. RNA-protein covalent cross-linking Source: UniProtKB-KW
  3. endocytosis involved in viral entry into host cell Source: UniProtKB-KW
  4. induction by virus of host autophagy Source: UniProtKB
  5. pore formation by virus in membrane of host cell Source: UniProtKB-KW
  6. pore-mediated entry of viral genome into host cell Source: UniProtKB-KW
  7. protein oligomerization Source: UniProtKB-KW
  8. suppression by virus of host RIG-I activity by RIG-I proteolysis Source: UniProtKB
  9. suppression by virus of host mRNA export from nucleus Source: UniProtKB-KW
  10. suppression by virus of host translation Source: UniProtKB-KW
  11. suppression by virus of host translation initiation factor activity Source: UniProtKB
  12. transcription, DNA-templated Source: InterPro
  13. viral RNA genome replication Source: InterPro
  14. virion attachment to host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase, Ion channel, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase, Viral ion channel

Keywords - Biological processi

Activation of host autophagy by virus, DNA replication, Eukaryotic host gene expression shutoff by virus, Eukaryotic host translation shutoff by virus, Host gene expression shutoff by virus, Host mRNA suppression by virus, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host mRNA nuclear export by virus, Inhibition of host RIG-I by virus, Inhibition of host RLR pathway by virus, Ion transport, Pore-mediated penetration of viral genome into host cell, Transport, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus endocytosis by host, Virus entry into host cell

Keywords - Ligandi

ATP-binding, Nucleotide-binding, RNA-binding

Protein family/group databases

MEROPSiC03.011.

Names & Taxonomyi

Protein namesi
Recommended name:
Genome polyprotein
Cleaved into the following 17 chains:
Alternative name(s):
VP4-VP2
Alternative name(s):
P1A
Virion protein 4
Alternative name(s):
P1B
Virion protein 2
Alternative name(s):
P1C
Virion protein 3
Alternative name(s):
P1D
Virion protein 1
Protease 2A (EC:3.4.22.29)
Short name:
P2A
Alternative name(s):
Picornain 2A
Protein 2A
Protein 2B
Short name:
P2B
Protein 2C (EC:3.6.1.15)
Short name:
P2C
Protein 3A
Short name:
P3A
Alternative name(s):
Protein 3B
Short name:
P3B
Protease 3C (EC:3.4.22.28)
Short name:
P3C
Alternative name(s):
3D polymerase
Short name:
3Dpol
Protein 3D
Short name:
3D
OrganismiCoxsackievirus B1 (strain Japan)
Taxonomic identifieri103902 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeEnterovirusEnterovirus B
Virus hostiHomo sapiens (Human) [TaxID: 9606]
ProteomesiUP000000837: Genome

Subcellular locationi

Chain Capsid protein VP0 : Virion By similarity. Host cytoplasm By similarity
Chain Capsid protein VP2 : Virion By similarity. Host cytoplasm By similarity
Chain Capsid protein VP3 : Virion By similarity. Host cytoplasm By similarity
Chain Capsid protein VP1 : Virion By similarity. Host cytoplasm By similarity
Chain Protein 2B : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
Chain Protein 2C : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
Chain Protein 3A : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
Chain Protein 3AB : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
Chain Protein 3CD : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
Chain RNA-directed RNA polymerase : Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Reviewed prediction
Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini2 – 14921491Cytoplasmic Reviewed prediction
Add
BLAST
Intramembranei1493 – 150816 Reviewed prediction
Add
BLAST
Topological domaini1509 – 2182674Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. T=pseudo3 icosahedral viral capsid Source: UniProtKB-KW
  2. host cell cytoplasmic vesicle membrane Source: UniProtKB-SubCell
  3. integral to membrane of host cell Source: UniProtKB-KW
  4. membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Host cytoplasmic vesicle, Host membrane, Membrane, T=pseudo3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed; by host By similarity
Chaini2 – 21822181Genome polyprotein By similarity
PRO_0000426236Add
BLAST
Chaini2 – 848847P1 By similarity
PRO_0000426237Add
BLAST
Chaini2 – 332331Capsid protein VP0 Reviewed prediction
PRO_0000426238Add
BLAST
Chaini2 – 6968Capsid protein VP4 Reviewed prediction
PRO_0000426239Add
BLAST
Chaini70 – 332263Capsid protein VP2 Reviewed prediction
PRO_0000426240Add
BLAST
Chaini333 – 568236Capsid protein VP3 Reviewed prediction
PRO_0000426241Add
BLAST
Chaini568 – 848281Capsid protein VP1 Reviewed prediction
PRO_0000426242Add
BLAST
Chaini848 – 1426579P2 By similarity
PRO_0000426243Add
BLAST
Chaini848 – 998151Protease 2A Reviewed prediction
PRO_0000426244Add
BLAST
Chaini999 – 109799Protein 2B Reviewed prediction
PRO_0000039565Add
BLAST
Chaini1098 – 1426329Protein 2C Reviewed prediction
PRO_0000039566Add
BLAST
Chaini1427 – 2182756P3 By similarity
PRO_0000426245Add
BLAST
Chaini1427 – 1537111Protein 3AB Reviewed prediction
PRO_0000426246Add
BLAST
Chaini1427 – 151589Protein 3A Reviewed prediction
PRO_0000039567Add
BLAST
Chaini1516 – 153722Viral protein genome-linked Reviewed prediction
PRO_0000426247Add
BLAST
Chaini1538 – 2182645Protein 3CD Reviewed prediction
PRO_0000426248Add
BLAST
Chaini1538 – 1719182Protease 3C Reviewed prediction
PRO_0000426249Add
BLAST
Chaini1720 – 2182463RNA-directed RNA polymerase By similarity
PRO_0000426250Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi2 – 21N-myristoyl glycine; by host By similarity
Modified residuei1518 – 15181O-(5'-phospho-RNA)-tyrosine By similarity

Post-translational modificationi

Specific enzymatic cleavages in vivo by the viral proteases yield a variety of precursors and mature proteins. Polyprotein processing intermediates such as VP0 which is a VP4-VP2 precursor are produced. During virion maturation, non-infectious particles are rendered infectious following cleavage of VP0. This maturation cleavage is followed by a conformational change of the particle By similarity.
VPg is uridylylated by the polymerase and is covalently linked to the 5'-end of genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase By similarity.
Myristoylation of VP4 is required during RNA encapsidation and formation of the mature virus particle By similarity.
Capsid protein VP0: Myristoylation is required for the formation of pentamers during virus assembly. Further assembly of 12 pentamers and a molecule of genomic RNA generates the provirion By similarity.
Genome polyprotein: Specific enzymatic cleavages in vivo by the viral proteases yield processing intermediates and the mature proteins By similarity.
Capsid protein VP0: During virion maturation, immature virions are rendered infectious following cleavage of VP0 into VP4 and VP2. This maturation seems to be an autocatalytic event triggered by the presence of RNA in the capsid and it is followed by a conformational change infectious virion By similarity.
Viral protein genome-linked: VPg is uridylylated by the polymerase into VPg-pUpU. This acts as a nucleotide-peptide primer for the genomic RNA replication By similarity.

Keywords - PTMi

Covalent protein-RNA linkage, Lipoprotein, Myristate, Phosphoprotein

Interactioni

Subunit structurei

Capsid protein VP1: Interacts with capsid protein VP0, and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Capsid protein VP0: interacts with capsid protein VP1 and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Capsid protein VP2: Interacts with capsid protein VP1 and capsid protein VP3 in the mature capsid By similarity. Capsid protein VP3: interacts with capsid protein VP0 and capsid protein VP1 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Capsid protein VP4: Interacts with capsid protein VP1 and capsid protein VP3 By similarity. Protein 2C: interacts with capsid protein VP3; this interaction may be important for virion morphogenesis By similarity. Protein 3AB: interacts with protein 3CD By similarity. Viral protein genome-linked: interacts with RNA-directed RNA polymerase By similarity. Protein 3CD: interacts with protein 3AB and with RNA-directed RNA polymerase. RNA-directed RNA polymerase: interacts with viral protein genome-linked and with protein 3CD By similarity.

Structurei

3D structure databases

ProteinModelPortaliP08291.
SMRiP08291. Positions 2-69, 77-570, 583-847, 849-998, 1538-2182.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1202 – 1358157SF3 helicase
Add
BLAST
Domaini1538 – 1703166Peptidase C3
Add
BLAST
Domaini1947 – 2063117RdRp catalytic
Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni568 – 58417Amphipatic alpha-helix Reviewed prediction
Add
BLAST
Regioni1427 – 145024Disordered By similarity
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat

Family and domain databases

Gene3Di2.60.120.20. 3 hits.
4.10.80.10. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR014838. P3A.
IPR000081. Peptidase_C3.
IPR000199. Peptidase_C3A/C3B_picornavir.
IPR003138. Pico_P1A.
IPR002527. Pico_P2B.
IPR001676. Picornavirus_capsid.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF08727. P3A. 1 hit.
PF00548. Peptidase_C3. 1 hit.
PF02226. Pico_P1A. 1 hit.
PF00947. Pico_P2A. 1 hit.
PF01552. Pico_P2B. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00073. Rhv. 3 hits.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
ProDomiPD001306. Peptidase_C3. 1 hit.
PD649346. Pico_P2B. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50494. SSF50494. 2 hits.
SSF52540. SSF52540. 1 hit.
SSF89043. SSF89043. 1 hit.
PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P08291-1 [UniParc]FASTAAdd to Basket

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MGAQVSTQKT GAHETGLNAS GNSIIHYTNI NYYKDAASNS ANRQDFTQDP     50
GKFTEPVKDI MIKSMPALNS PSAEECGYSD RVRSITLGNS TITTQECANV 100
VVGYGVWPEY LKDNEATGED QPTQPDVATC RFYTLESVQW MKNSAGWWWK 150
LPDALSQMGL FGQNMQYHYL GRTGYTIHVQ CNASKFHQGC LLVVCVPEAE 200
MGCSNLNNTP KFAELSGGDN ARMFTDTEVG TSNDKKVQTA VWNAGMGVGV 250
GNLTIFPHQW INLRTNNSAT IVMPYINSVP MDNMYRHNNL TLMIIPFVPL 300
NYSEGSSPYV PITVTIAPMC AEYNGLRLAS SQGLPVMTTP GSTQFLTSDD 350
FQSPSAMPQF DVTPEMQIPG RVNNLMEIAE VDSVVPVNNT DNNVNGLKAY 400
QIPVQSNSDN RRQVFGFPLQ PGANNVLNRT LLGEILNYYT HWSGSIKLTF 450
MFCGSAMATG KFLLAYSPPG AGVPKNRRDA MLGTHVIWDV GLQSSCVLCV 500
PWISQTHYRY VVEDEYTAAG YVTCWYQTNI IVPADVQSTC DILCFVSACN 550
DFSVRMLKDT PFIRQDNFYQ GPVEESVERA MVRVADTVSS KPTNSESIPA 600
LTAAETGHTS QVVPSDTMQT RHVKNYHSRS ESSIENFLCR SACVYYATYN 650
NNSEKGYAEW VINTRQVAQL LRRKLEFTYL RFDLELTFVI TSAQEPSTAT 700
SVDAPVQTQQ IMYVPPGGPV PTKVTDYAWQ TSTNPSVFWT EGNAPPRMSI 750
PFISIGNAYS CFYDGWTQFS RNGVYGINTL NNMGTLYMRH VNEAGQGPIK 800
STVRIYFKPK HVKAWVPRPP RLCQYEKQKN VNFNPTGVTT TRSNITTTGA 850
FGQQSGAVYV GNYRVVNRHL ATREDWQRCV WEDYNRDLLV STTTAHGCDI 900
IARCQCTTGV YFCASRNKHY PVSFEGPGLV EVQESEYYPK RYQSHVLLAA 950
GFSEPGDCGG ILRCEHGVVG IVTMGGEGVV GFADVRDLLW LEDDAMEQGV 1000
KDYVEQLGNA FGSGFTNQVC EQVNLLKESL VGQDSILEKS LKALVKIVSA 1050
LVIVVRNHDD LITVTATLAL IGCTSSPWRW LKQKVSQYYG IPMAERQNSG 1100
WLKKFTEMTN ACKGMEWIAI KIQKFIEWLK VKILPEVKEK HEFLNRLKQL 1150
PLLESQIATI EQSAPSQSDQ EQLFSNVQYF AHYCRKYAPL YAAEAKRVFS 1200
LEKKMSNYIQ FKSKCRIEPV CLLLHGSPGA GKSVATNLIG RSLAEKLNSS 1250
VYSLPPDPDH FDGYKQQAVV IMDDLCQNPD GKDVSLFCQM VSSVDFVPPM 1300
AALEEKGILF TSPFVLASTN AGSINAPTVS DSRALARRFH FDMNIEVISM 1350
YSQNGKINMP MSVKTCDEEC CPVNFKKCCP LVCGKAIQFI DRRTQVRYSL 1400
DMLVTEMFRE YNHRHSVGAT LEALFQGPPI YREIKISIAP ETPPPPAIAD 1450
LLKSVDSEAV REYCKEKGWL VPEINSTLQI EKHVSRAFIC LQALTTFVSV 1500
AGIIYIIYKL FAGFQGAYTG MPNQKPKVPT LRQAKVQGPV FEFAVAMMKR 1550
NSSTVKTEYG EFTMLGIYDR WAVLPRHAKP GPTILMNDQE IGVLDAKELV 1600
DKDGTNLELT LLKLNRNEKF RDIRGFLAKE EVEVNEAVLA INTSKFPNMY 1650
IPVGQVTEYG FLNLGGTPTK RMLMYNFPTR AGQCGGVLMS TGKVLGIHVG 1700
GNGHQGFSAA LLKHYFNDEQ GEIEFIESSK EAGFPVINTP SKTKLEPSVF 1750
HQVFEGNKEP AVLRNGDPRL RANFEEAIFS KYIGNVNTHV DEYMLEAVDH 1800
YAGQLATLDI STEPMRLEDA VYGTEGLEAL DLTTSAGYPY VALGIKKRDI 1850
LSKKTRDLTK LKECMDKYGL NLPMVTYVKD ELRSAEKVAK GKSRLIEASS 1900
LNDSVAMRQT FGNLYKTFHL NPGIVTGSAV GCDPDLFWSK IPVMLDGHLV 1950
AFDYSGYDAS LSPVWFACLK LLLEKLGYSH KETNYIDYLC NSHHLYRDKH 2000
YFVRGGMPSG CSGTSIFNSM INNIIIRTLM LKVYKGIDLD QFRMIAYGDD 2050
VIASYPWPID ASLLAEAGRD CGLIMTPADK GDCFNEVTWA NVTFLKRYFR 2100
ADEQYPFLVH PVMPMKDIHE SIRWTKDPKN TQDHVRSLCL LAWHNGEHEY 2150
EEFIRKIRSV PVGACLTLPA FSTLRRKWLD SF 2182
Length:2,182
Mass (Da):243,946
Last modified:January 23, 2007 - v3
Checksum:i387B9391275859B1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M16560 Genomic RNA. Translation: AAC00531.1.
PIRiA26353. GNNYB1.
RefSeqiNP_040958.1. NC_001472.1.

Genome annotation databases

GeneIDi1461114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M16560 Genomic RNA. Translation: AAC00531.1 .
PIRi A26353. GNNYB1.
RefSeqi NP_040958.1. NC_001472.1.

3D structure databases

ProteinModelPortali P08291.
SMRi P08291. Positions 2-69, 77-570, 583-847, 849-998, 1538-2182.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

MEROPSi C03.011.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1461114.

Family and domain databases

Gene3Di 2.60.120.20. 3 hits.
4.10.80.10. 2 hits.
InterProi IPR003593. AAA+_ATPase.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR014838. P3A.
IPR000081. Peptidase_C3.
IPR000199. Peptidase_C3A/C3B_picornavir.
IPR003138. Pico_P1A.
IPR002527. Pico_P2B.
IPR001676. Picornavirus_capsid.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF08727. P3A. 1 hit.
PF00548. Peptidase_C3. 1 hit.
PF02226. Pico_P1A. 1 hit.
PF00947. Pico_P2A. 1 hit.
PF01552. Pico_P2B. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00073. Rhv. 3 hits.
PF00910. RNA_helicase. 1 hit.
[Graphical view ]
ProDomi PD001306. Peptidase_C3. 1 hit.
PD649346. Pico_P2B. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF50494. SSF50494. 2 hits.
SSF52540. SSF52540. 1 hit.
SSF89043. SSF89043. 1 hit.
PROSITEi PS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete nucleotide sequence of the genome of coxsackievirus B1."
    Iizuka N., Kuge S., Nomoto A.
    Virology 156:64-73(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiPOLG_CXB1J
AccessioniPrimary (citable) accession number: P08291
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 139 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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