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Reviewed, UniProtKB/Swiss-Prot P08253 (MMP2_HUMAN)

Last modified June 16, 2009. Version 129. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (7) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    72 kDa type IV collagenase
    EC=3.4.24.24
Alternative name(s):
    72 kDa gelatinase
    Matrix metalloproteinase-2
      Short name=MMP-2
    Gelatinase A
    TBE-1
Gene names
Name: MMP2
Synonyms: CLG4A
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length660 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

In addition to gelatin and collagens, it cleaves KiSS1 at a Gly-|-Leu bond.

Catalytic activity

Cleavage of gelatin type I and collagen types IV, V, VII, X. Cleaves the collagen-like sequence Pro-Gln-Gly-|-Ile-Ala-Gly-Gln.

Cofactor

Binds 4 calcium ions per subunit.

Binds 2 zinc ions per subunit.

Enzyme regulation

Inhibited by histatin-3 1/24 (histatin-5). Ref.9

Subunit structure

Ligand for integrin alpha-V/beta-3.

Subcellular location

Secretedextracellular spaceextracellular matrix Probable.

Tissue specificity

Produced by normal skin fibroblasts.

Domain

The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.

Post-translational modification

The propeptide is processed by MMP14 (MT-MMP1) and MMP16 (MT-MMP3).

Involvement in disease

Defects in MMP2 are the cause of Torg-Winchester syndrome [MIM:259600]; also called multicentric osteolysis nodulosis and arthropathy (MONA). Torg-Winchester syndrome is an autosomal recessive osteolysis syndrome. It is severe with generalized osteolysis and osteopenia. Subcutaneous nodules are usually absent. Torg-Winchester syndrome has been associated with a number of additional features including coarse face, corneal opacities, patches of thickened, hyperpigmented skin, hypertrichosis and gum hypertrophy. However, these features are not always present and have occasionally been observed in other osteolysis syndromes.

Sequence similarities

Belongs to the peptidase M10A family.

Contains 3 fibronectin type-II domains.

Contains 4 hemopexin-like domains.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

HSP90AA1P079001EBI-1033518,EBI-296047

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential
Propeptide30 – 10980Activation peptide
PRO_0000028714
Chain110 – 66055172 kDa type IV collagenase
PRO_0000028715

Regions

Domain228 – 27649Fibronectin type-II 1
Domain286 – 33449Fibronectin type-II 2
Domain344 – 39249Fibronectin type-II 3
Domain475 – 51844Hemopexin-like 1
Domain520 – 56344Hemopexin-like 2
Domain568 – 61548Hemopexin-like 3
Domain617 – 66044Hemopexin-like 4
Region110 – 221112Collagenase-like 1
Region222 – 396175Collagen-binding
Region397 – 46569Collagenase-like 2
Motif100 – 1078Cysteine switch By similarity

Sites

Active site4041 By similarity
Metal binding1021Zinc 2; in inhibited form By similarity
Metal binding1341Calcium 1 By similarity
Metal binding1681Calcium 2 By similarity
Metal binding1781Zinc 1 By similarity
Metal binding1801Zinc 1 By similarity
Metal binding1851Calcium 3 By similarity
Metal binding1861Calcium 3; via carbonyl oxygen By similarity
Metal binding1931Zinc 1 By similarity
Metal binding2001Calcium 2; via carbonyl oxygen By similarity
Metal binding2021Calcium 2; via carbonyl oxygen By similarity
Metal binding2041Calcium 2 By similarity
Metal binding2061Zinc 1 By similarity
Metal binding2081Calcium 3 By similarity
Metal binding2091Calcium 1 By similarity
Metal binding2111Calcium 3 By similarity
Metal binding4031Zinc 2; catalytic By similarity
Metal binding4071Zinc 2; catalytic By similarity
Metal binding4131Zinc 2; catalytic By similarity
Metal binding4761Calcium 4; via carbonyl oxygen
Metal binding5211Calcium 4; via carbonyl oxygen
Metal binding5691Calcium 4; via carbonyl oxygen
Metal binding6181Calcium 4; via carbonyl oxygen

Amino acid modifications

Glycosylation5731N-linked (GlcNAc...) Potential
Glycosylation6421N-linked (GlcNAc...) Potential
Disulfide bond233 ↔ 259 By similarity
Disulfide bond247 ↔ 274 By similarity
Disulfide bond291 ↔ 317 By similarity
Disulfide bond305 ↔ 332 By similarity
Disulfide bond349 ↔ 375 By similarity
Disulfide bond363 ↔ 390 By similarity
Disulfide bond469 ↔ 660

Natural variations

Natural variant1011R → H in Torg-Winchester syndrome.
VAR_032423
Natural variant2101D → Y Ref.13
VAR_032424
Natural variant2281A → T in a colorectal cancer sample; somatic mutation. Ref.16
VAR_036136
Natural variant4001Missing in Torg-Winchester syndrome.
VAR_054996
Natural variant4041E → K in Torg-Winchester syndrome.
VAR_032425
Natural variant4471A → V: dbSNP rs17859943. Ref.4
VAR_020616
Natural variant4981T → M in a colorectal cancer sample; somatic mutation. Ref.16
VAR_036137
Natural variant6211V → L: dbSNP rs16955280. Ref.4
VAR_020617
Natural variant6441S → I in a colorectal cancer sample; somatic mutation. Ref.16
VAR_036138

Experimental info

Sequence conflict5461S → G in BAG35588. Ref.3
Sequence conflict6181D → G in BAG35588. Ref.3

Secondary structure

...................................................................................................................... 660
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P08253-1 [UniParc].

Last modified February 1, 1991. Version 2.
Checksum: BC7147DC8B49F289

FASTA66073,882
        10         20         30         40         50         60 
MEALMARGAL TGPLRALCLL GCLLSHAAAA PSPIIKFPGD VAPKTDKELA VQYLNTFYGC 

        70         80         90        100        110        120 
PKESCNLFVL KDTLKKMQKF FGLPQTGDLD QNTIETMRKP RCGNPDVANY NFFPRKPKWD 

       130        140        150        160        170        180 
KNQITYRIIG YTPDLDPETV DDAFARAFQV WSDVTPLRFS RIHDGEADIM INFGRWEHGD 

       190        200        210        220        230        240 
GYPFDGKDGL LAHAFAPGTG VGGDSHFDDD ELWTLGEGQV VRVKYGNADG EYCKFPFLFN 

       250        260        270        280        290        300 
GKEYNSCTDT GRSDGFLWCS TTYNFEKDGK YGFCPHEALF TMGGNAEGQP CKFPFRFQGT 

       310        320        330        340        350        360 
SYDSCTTEGR TDGYRWCGTT EDYDRDKKYG FCPETAMSTV GGNSEGAPCV FPFTFLGNKY 

       370        380        390        400        410        420 
ESCTSAGRSD GKMWCATTAN YDDDRKWGFC PDQGYSLFLV AAHEFGHAMG LEHSQDPGAL 

       430        440        450        460        470        480 
MAPIYTYTKN FRLSQDDIKG IQELYGASPD IDLGTGPTPT LGPVTPEICK QDIVFDGIAQ 

       490        500        510        520        530        540 
IRGEIFFFKD RFIWRTVTPR DKPMGPLLVA TFWPELPEKI DAVYEAPQEE KAVFFAGNEY 

       550        560        570        580        590        600 
WIYSASTLER GYPKPLTSLG LPPDVQRVDA AFNWSKNKKT YIFAGDKFWR YNEVKKKMDP 

       610        620        630        640        650        660 
GFPKLIADAW NAIPDNLDAV VDLQGGGHSY FFKGAYYLKL ENQSLKSVKF GSIKSDWLGC 

« Hide

References

« Hide 'large scale' references
[1]"Structure of the human type IV collagenase gene."
Huhtala P., Chow L.T., Tryggvason K.
J. Biol. Chem. 265:11077-11082(1990) [PubMed: 2162831] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"On the structure and chromosome location of the 72- and 92-kDa human type IV collagenase genes."
Collier I.E., Bruns G.A.P., Goldberg G.I., Gerhard D.S.
Genomics 9:429-434(1991) [PubMed: 1851724] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Teratocarcinoma.
[4]NIEHS SNPs program
Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS VAL-447 AND LEU-621.
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain.
[6]"Completion of the primary structure of the human type IV collagenase preproenzyme and assignment of the gene (CLG4) to the q21 region of chromosome 16."
Huhtala P., Eddy R.L., Fan Y.S., Byers M.G., Shows T.B., Tryggvason K.
Genomics 6:554-559(1990) [PubMed: 2158484] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-51.
[7]"H-ras oncogene-transformed human bronchial epithelial cells (TBE-1) secrete a single metalloprotease capable of degrading basement membrane collagen."
Collier I.E., Wilhelm S.M., Eisen A.Z., Marmer B.L., Grant G.A., Seltzer J.L., Kronberger A., He C., Bauer E.A., Goldberg G.I.
J. Biol. Chem. 263:6579-6587(1988) [PubMed: 2834383] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 19-660, PARTIAL PROTEIN SEQUENCE.
[8]"TIMP-2: identification and characterization of a new member of the metalloproteinase inhibitor family."
Stetler-Stevenson W.G., Krutzsch H.C., Liotta L.A.
Matrix Suppl. 1:299-306(1992) [PubMed: 1480041] [Abstract]
Cited for: PROTEIN SEQUENCE OF 30-44.
Tissue: Melanoma.
[9]"Salivary histatin 5 is an inhibitor of both host and bacterial enzymes implicated in periodontal disease."
Gusman H., Travis J., Helmerhorst E.J., Potempa J., Troxler R.F., Oppenheim F.G.
Infect. Immun. 69:1402-1408(2001) [PubMed: 11179305] [Abstract]
Cited for: ENZYME REGULATION.
[10]"Cleavage of metastasis suppressor gene product KiSS-1 protein/metastin by matrix metalloproteinases."
Takino T., Koshikawa N., Miyamori H., Tanaka M., Sasaki T., Okada Y., Seiki M., Sato H.
Oncogene 22:4617-4626(2003) [PubMed: 12879005] [Abstract]
Cited for: PROTEOLYTIC PROCESSING OF KISS1.
[11]"Crystal structure of the haemopexin-like C-terminal domain of gelatinase A."
Libson A.M., Gittis A.G., Collier I.E., Marmer B.L., Goldberg G.I., Lattman E.E.
Nat. Struct. Biol. 2:938-942(1995) [PubMed: 7583664] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 443-660.
[12]"The C-terminal (haemopexin-like) domain structure of human gelatinase A (MMP2): structural implications for its function."
Gohlke U., Gomis-Rueth F.-X., Crabbe T., Murphy G., Docherty A.J., Bode W.
FEBS Lett. 378:126-130(1996) [PubMed: 8549817] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 458-660.
[13]"Mutation of the matrix metalloproteinase 2 gene (MMP2) causes a multicentric osteolysis and arthritis syndrome."
Martignetti J.A., Aqeel A.A., Sewairi W.A., Boumah C.E., Kambouris M., Mayouf S.A., Sheth K.V., Eid W.A., Dowling O., Harris J., Glucksman M.J., Bahabri S., Meyer B.F., Desnick R.J.
Nat. Genet. 28:261-265(2001) [PubMed: 11431697] [Abstract]
Cited for: VARIANT TORG-WINCHESTER SYNDROME HIS-101, VARIANT TYR-210.
[14]"Winchester syndrome caused by a homozygous mutation affecting the active site of matrix metalloproteinase 2."
Zankl A., Bonafe L., Calcaterra V., Di Rocco M., Superti-Furga A.
Clin. Genet. 67:261-266(2005) [PubMed: 15691365] [Abstract]
Cited for: VARIANT TORG-WINCHESTER SYNDROME LYS-404.
[15]"A novel homozygous MMP2 mutation in a family with Winchester syndrome."
Rouzier C., Vanatka R., Bannwarth S., Philip N., Coussement A., Paquis-Flucklinger V., Lambert J.-C.
Clin. Genet. 69:271-276(2006) [PubMed: 16542393] [Abstract]
Cited for: VARIANT TORG-WINCHESTER SYNDROME VAL-400 DEL.
[16]"The consensus coding sequences of human breast and colorectal cancers."
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. expand/collapse author list , Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E.
Science 314:268-274(2006) [PubMed: 16959974] [Abstract]
Cited for: VARIANTS [LARGE SCALE ANALYSIS] THR-228; MET-498 AND ILE-644.
+Additional computationally mapped references.

Cross-references

Sequence databases

M55593 expand/collapse EMBL AC list , M58552, M55582, M55583, M55584, M55585, M55586, M55587, M55588, M55589, M55590, M55591, M55592 Genomic DNA. Translation: AAA52028.1.
AK312711 mRNA. Translation: BAG35588.1.
AY738117 Genomic DNA. Translation: AAU10089.1.
BC002576 mRNA. Translation: AAH02576.1.
M33789 Genomic DNA. Translation: AAA52027.1.
J03210 mRNA. Translation: AAA35701.1.
IPIIPI00027780.
PIRA28153.
RefSeqNP_001121363.1.
NP_004521.1.
UniGeneHs.513617

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1CK7X-ray2.80A30-660[»]
1CXWNMR-A278-336[»]
1EAKX-ray2.66A/B/C/D32-452[»]
1GENX-ray2.15A443-660[»]
1GXDX-ray3.10A/B30-660[»]
1HOVNMR-A110-446[»]
1J7MNMR-A337-394[»]
1KS0NMR-A223-282[»]
1QIBX-ray2.80A115-449[»]
1RTGX-ray2.60A451-660[»]
ModBaseSearch...

Protein-protein interaction databases

DIPDIP:26N.
IntActP08253. 2 interactions.

Protein family/group databases

MEROPSM10.003.

PTM databases

PhosphoSiteP08253.

Proteomic databases

PeptideAtlasP08253.
PRIDEP08253.

Genome annotation databases

EnsemblENSG00000087245. Homo sapiens. [Contig view]
GeneID4313.
NMPDRfig|9606.3.peg.12256.

Organism-specific databases

GeneCardsGC16P054070.
H-InvDBHIX0013041.
HIX0040455.
HGNCHGNC:7166. MMP2.
HPACAB002788.
HPA001939.
MIM120360. gene.
259600. phenotype.
Orphanet85196. Nodulosis-arthropathy-osteolysis syndrome.
3460. Winchester disease.
PharmGKBPA30877.
GenAtlasSearch...

Phylogenomic databases

HOGENOMP08253.
HOVERGENP08253.
OMAP08253. DDDRKWG.

Enzyme and pathway databases

BRENDA3.4.24.24. 247.
Pathway_Interaction_DBamb2_neutrophils_pathway. amb2 Integrin signaling.
foxm1pathway. FOXM1 transcription factor network.
lysophospholipid_pathway. LPA receptor mediated events.
avb3_opn_pathway. Osteopontin-mediated events.
er_nongenomic_pathway. Plasma membrane estrogen receptor signaling.
syndecan_2_pathway. Syndecan-2-mediated signaling events.

Gene expression databases

ArrayExpressP08253.
BgeeP08253.
CleanExHS_MMP2.
GermOnlineENSG00000087245. Homo sapiens.

Family and domain databases

InterProIPR000562. FN_type2_col_bd.
IPR000585. Hemopexin/matrixin.
IPR018486. Hemopexin/matrixin_CS.
IPR018487. Hemopexin/matrixin_repeat.
IPR001818. Pept_M10A_M12B.
IPR006025. Pept_M_Zn_BS.
IPR006026. Peptidase_M.
IPR002477. Peptidoglycan-bd-like.
[Graphical view]
Gene3DG3DSA:2.110.10.10. Hemopexin. 1 hit.
PfamPF00040. fn2. 3 hits.
PF00045. Hemopexin. 4 hits.
PF00413. Peptidase_M10. 1 hit.
PF01471. PG_binding_1. 1 hit.
[Graphical view]
PRINTSPR00013. FNTYPEII.
PR00138. MATRIXIN.
ProDomPD000995. FN_Type_II. 2 hits.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00059. FN2. 3 hits.
SM00120. HX. 4 hits.
SM00235. ZnMc. 1 hit.
[Graphical view]
PROSITEPS00546. CYSTEINE_SWITCH. 1 hit.
PS00023. FN2_1. 3 hits.
PS51092. FN2_2. 3 hits.
PS00024. HEMOPEXIN. 1 hit.
PS00142. ZINC_PROTEASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

DrugBankDB00786. Marimastat.
DB00605. Sulindac.
NextBio16973.
PMAP-CutDBP08253.
SOURCESearch...

Entry information

Entry nameMMP2_HUMAN
AccessionPrimary (citable) accession number: P08253
Secondary accession number(s): B2R6U1, Q9UCJ8
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: February 1, 1991
Last modified: June 16, 2009
This is version 129 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 16

Human chromosome 16: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Peptidase families

Classification of peptidase families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents