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Protein

Uncharacterized protein YciH

Gene

yciH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • ribosome binding Source: EcoCyc
  • translation initiation factor activity Source: EcoCyc

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein biosynthesis, Translation regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11128-MONOMER.
ECOL316407:JW1274-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YciH
Gene namesi
Name:yciH
Ordered Locus Names:b1282, JW1274
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11128. yciH.

Subcellular locationi

GO - Cellular componenti

  • translation initiation complex Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001305951 – 108Uncharacterized protein YciHAdd BLAST108

Proteomic databases

PaxDbiP08245.
PRIDEiP08245.

Interactioni

Protein-protein interaction databases

BioGridi4259544. 15 interactors.
DIPiDIP-11582N.
IntActiP08245. 48 interactors.
MINTiMINT-1276753.
STRINGi511145.b1282.

Structurei

Secondary structure

1108
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi32 – 37Combined sources6
Beta strandi41 – 44Combined sources4
Beta strandi48 – 51Combined sources4
Helixi57 – 67Combined sources11
Beta strandi70 – 73Combined sources4
Beta strandi82 – 84Combined sources3
Helixi89 – 99Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1D1RNMR-A1-108[»]
ProteinModelPortaliP08245.
SMRiP08245.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP08245.

Family & Domainsi

Sequence similaritiesi

Belongs to the SUI1 family.Curated

Phylogenomic databases

eggNOGiENOG4108ZJT. Bacteria.
COG0023. LUCA.
HOGENOMiHOG000279814.
InParanoidiP08245.
KOiK03113.
OMAiEIQGDNR.
PhylomeDBiP08245.

Family and domain databases

CDDicd11567. YciH_like. 1 hit.
Gene3Di3.30.780.10. 1 hit.
InterProiIPR001950. SUI1.
IPR005872. SUI1_arc_bac.
[Graphical view]
PfamiPF01253. SUI1. 1 hit.
[Graphical view]
PIRSFiPIRSF037511. Transl_init_SUI1_pro. 1 hit.
SUPFAMiSSF55159. SSF55159. 1 hit.
TIGRFAMsiTIGR01158. SUI1_rel. 1 hit.
PROSITEiPS50296. SUI1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P08245-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDSNSRLVY STETGRIDEP KAAPVRPKGD GVVRIQRQTS GRKGKGVCLI
60 70 80 90 100
TGVDLDDAEL TKLAAELKKK CGCGGAVKDG VIEIQGDKRD LLKSLLEAKG

MKVKLAGG
Length:108
Mass (Da):11,396
Last modified:August 1, 1988 - v1
Checksum:iAEE2EFE7CEF1BE16
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02768 Genomic DNA. Translation: AAA24484.1.
U00096 Genomic DNA. Translation: AAC74364.2.
AP009048 Genomic DNA. Translation: BAA14836.1.
PIRiE64876. Q3ECPF.
RefSeqiNP_415798.2. NC_000913.3.
WP_001295580.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74364; AAC74364; b1282.
BAA14836; BAA14836; BAA14836.
GeneIDi947058.
KEGGiecj:JW1274.
eco:b1282.
PATRICi32117828. VBIEscCol129921_1334.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02768 Genomic DNA. Translation: AAA24484.1.
U00096 Genomic DNA. Translation: AAC74364.2.
AP009048 Genomic DNA. Translation: BAA14836.1.
PIRiE64876. Q3ECPF.
RefSeqiNP_415798.2. NC_000913.3.
WP_001295580.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1D1RNMR-A1-108[»]
ProteinModelPortaliP08245.
SMRiP08245.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259544. 15 interactors.
DIPiDIP-11582N.
IntActiP08245. 48 interactors.
MINTiMINT-1276753.
STRINGi511145.b1282.

Proteomic databases

PaxDbiP08245.
PRIDEiP08245.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74364; AAC74364; b1282.
BAA14836; BAA14836; BAA14836.
GeneIDi947058.
KEGGiecj:JW1274.
eco:b1282.
PATRICi32117828. VBIEscCol129921_1334.

Organism-specific databases

EchoBASEiEB1118.
EcoGeneiEG11128. yciH.

Phylogenomic databases

eggNOGiENOG4108ZJT. Bacteria.
COG0023. LUCA.
HOGENOMiHOG000279814.
InParanoidiP08245.
KOiK03113.
OMAiEIQGDNR.
PhylomeDBiP08245.

Enzyme and pathway databases

BioCyciEcoCyc:EG11128-MONOMER.
ECOL316407:JW1274-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP08245.
PROiP08245.

Family and domain databases

CDDicd11567. YciH_like. 1 hit.
Gene3Di3.30.780.10. 1 hit.
InterProiIPR001950. SUI1.
IPR005872. SUI1_arc_bac.
[Graphical view]
PfamiPF01253. SUI1. 1 hit.
[Graphical view]
PIRSFiPIRSF037511. Transl_init_SUI1_pro. 1 hit.
SUPFAMiSSF55159. SSF55159. 1 hit.
TIGRFAMsiTIGR01158. SUI1_rel. 1 hit.
PROSITEiPS50296. SUI1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCIH_ECOLI
AccessioniPrimary (citable) accession number: P08245
Secondary accession number(s): P76033
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: November 30, 2016
This is version 128 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. Translation initiation factors
    List of translation initiation factor entries
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.