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Reviewed, UniProtKB/Swiss-Prot P08197 (CYC6_CHLRE)

Last modified June 16, 2009. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Cytochrome c6, chloroplastic
Alternative name(s):
    Soluble cytochrome f
    Cytochrome c-553
    Cytochrome c553
    Cytochrome c-552
Gene names
Name: petJ
OrganismChlamydomonas reinhardtii
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Chlorophyta › Chlorophyceae › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas

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Protein attributes

Sequence length148 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Function

Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.

Subunit structure

Monomer.

Subcellular location

Plastid › chloroplast thylakoid lumen.

Post-translational modification

Binds 1 heme group per subunit.

Sequence similarities

Belongs to the cytochrome c family. PetJ subfamily.

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Ontologies

Keywords
   Biological processElectron transport
Photosynthesis
Transport
   Cellular componentChloroplast
Plastid
Thylakoid
   DomainTransit peptide
   LigandHeme
Iron
Metal-binding
   Technical term3D-structure
Gene Ontology (GO)
   Biological processelectron transport chain

Inferred from electronic annotation. Source: UniProtKB-KW

photosynthesis

Inferred from electronic annotation. Source: UniProtKB-KW

transport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentchloroplast thylakoid lumen

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionelectron carrier activity

Inferred from electronic annotation. Source: InterPro

heme binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 5858Chloroplast
Chain59 – 14890Cytochrome c6, chloroplastic
PRO_0000023850

Sites

Metal binding761Iron (heme axial ligand)
Metal binding1181Iron (heme axial ligand)
Binding site721Heme (covalent)
Binding site751Heme (covalent)

Experimental info

Sequence conflict1071I → S in AAA33081. Ref.1

Secondary structure

1 ................ 148
Helix Strand Turn

Details...

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Sequences

Sequence LengthMass (Da)Tools
P08197-1 [UniParc].

Last modified August 1, 1992. Version 2.
Checksum: 091567E642F457E8

FASTA14815,427
        10         20         30         40         50         60 
MLQLANRSVR AKAARASQSA RSVSCAAAKR GADVAPLTSA LAVTASILLT TGAASASAAD 

        70         80         90        100        110        120 
LALGAQVFNG NCAACHMGGR NSVMPEKTLD KAALEQYLDG GFKVESIIYQ VENGKGAMPA 

       130        140 
WADRLSEEEI QAVAEYVFKQ ATDAAWKY

« Hide

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References

[1]"The Cu(II)-repressible plastidic cytochrome c. Cloning and sequence of a complementary DNA for the pre-apoprotein."
Merchant S., Bogorad L.
J. Biol. Chem. 262:9062-9067(1987) [PubMed: 3036842] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"Isolation and structural characterization of the Chlamydomonas reinhardtii gene for cytochrome c6. Analysis of the kinetics and metal specificity of its copper-responsive expression."
Hill K.L., Li H.H., Singer J., Merchant S.
J. Biol. Chem. 266:15060-15067(1991) [PubMed: 1714451] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"The structure of chloroplast cytochrome c6 at 1.9-A resolution: evidence for functional oligomerization."
Kerfeld C.A., Anwar H.P., Interrante R., Merchant S., Yeates T.O.
J. Mol. Biol. 250:627-647(1995) [PubMed: 7623381] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS).

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Cross-references

Sequence databases

M67448 Genomic DNA. Translation: AAB00729.1.
J02774 mRNA. Translation: AAA33081.1.
PIRCCKM6R. A27113.
RefSeqXP_001698242.1.
UniGeneCre.5921

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1CYIX-ray1.90A59-148[»]
1CYJX-ray1.90A59-148[»]
ModBaseSearch...

Genome annotation databases

GeneID5723799.
KEGGcre:CHLREDRAFT_193170.

Family and domain databases

InterProIPR003088. Cyt_c_I.
IPR008168. Cyt_C_IC.
IPR009056. Cyt_c_monohaem.
[Graphical view]
Gene3DG3DSA:1.10.760.10. Cytochrome_c_R. 1 hit.
PfamPF00034. Cytochrom_C. 1 hit.
[Graphical view]
PRINTSPR00605. CYTCHROMECIC.
PROSITEPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameCYC6_CHLRE
AccessionPrimary (citable) accession number: P08197
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1992
Last modified: June 16, 2009
This is version 75 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents