Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Oligopeptide transport system permease protein OppC

Gene

oppC

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Peptide transport, Protein transport, Transport

Protein family/group databases

TCDBi3.A.1.5.1. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Oligopeptide transport system permease protein OppC
Gene namesi
Name:oppC
Ordered Locus Names:STM1744
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 37Cytoplasmic1 PublicationAdd BLAST37
Transmembranei38 – 59HelicalCuratedAdd BLAST22
Topological domaini60 – 102Extracellular1 PublicationAdd BLAST43
Transmembranei103 – 122HelicalCuratedAdd BLAST20
Topological domaini123 – 139Cytoplasmic1 PublicationAdd BLAST17
Transmembranei140 – 160HelicalCuratedAdd BLAST21
Topological domaini161 – 163Extracellular1 Publication3
Transmembranei164 – 180HelicalCuratedAdd BLAST17
Topological domaini181 – 215Cytoplasmic1 PublicationAdd BLAST35
Transmembranei216 – 236HelicalCuratedAdd BLAST21
Topological domaini237 – 267Extracellular1 PublicationAdd BLAST31
Transmembranei268 – 290HelicalCuratedAdd BLAST23
Topological domaini291 – 302Cytoplasmic1 PublicationAdd BLAST12

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000601511 – 302Oligopeptide transport system permease protein OppCAdd BLAST302

Proteomic databases

PaxDbiP08006.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM1744.

Structurei

3D structure databases

ProteinModelPortaliP08006.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini101 – 290ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST190

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105C2T. Bacteria.
COG1173. LUCA.
HOGENOMiHOG000171367.
KOiK15582.
OMAiIVVRHIV.
PhylomeDBiP08006.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
IPR025966. OppC_N.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
PF12911. OppC_N. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P08006-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMLSKKNSET LENFSEKLEV EGRSLWQDAR RRFMHNRAAV ASLIVLFLIA
60 70 80 90 100
LFVTVAPMLS QFTYFDTDWG MMSSAPDMAS GHYFGTDSSG RDLLVRVAIG
110 120 130 140 150
GRISLMVGIA AALVAVIVGT LYGSLSGYLG GKIDSVMMRL LEILNSFPFM
160 170 180 190 200
FFVILLVTFF GQNILLIFVA IGMVSWLDMA RIVRGQTLSL KRKEFIEAAQ
210 220 230 240 250
VGGVSTASIV IRHIVPNVLG VVVVYASLLV PSMILFESFL SFLGLGTQEP
260 270 280 290 300
LSSWGALLSD GANSMEVSPW LLLFPAGFLV VTLFCFNFIG DGLRDALDPK

DR
Length:302
Mass (Da):33,090
Last modified:August 1, 1988 - v1
Checksum:i0E6FE57404F7339E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X05491 Genomic DNA. Translation: CAA29041.1.
AE006468 Genomic DNA. Translation: AAL20662.1.
PIRiC29333. QREBOC.
RefSeqiNP_460703.1. NC_003197.1.
WP_000979653.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL20662; AAL20662; STM1744.
GeneIDi1253263.
KEGGistm:STM1744.
PATRICi32382003. VBISalEnt20916_1841.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X05491 Genomic DNA. Translation: CAA29041.1.
AE006468 Genomic DNA. Translation: AAL20662.1.
PIRiC29333. QREBOC.
RefSeqiNP_460703.1. NC_003197.1.
WP_000979653.1. NC_003197.1.

3D structure databases

ProteinModelPortaliP08006.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM1744.

Protein family/group databases

TCDBi3.A.1.5.1. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP08006.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL20662; AAL20662; STM1744.
GeneIDi1253263.
KEGGistm:STM1744.
PATRICi32382003. VBISalEnt20916_1841.

Phylogenomic databases

eggNOGiENOG4105C2T. Bacteria.
COG1173. LUCA.
HOGENOMiHOG000171367.
KOiK15582.
OMAiIVVRHIV.
PhylomeDBiP08006.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
IPR025966. OppC_N.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
PF12911. OppC_N. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiOPPC_SALTY
AccessioniPrimary (citable) accession number: P08006
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: November 2, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.