P07947 (YES_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 161.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Tyrosine-protein kinase Yes EC=2.7.10.2 Alternative name(s): Proto-oncogene c-Yes p61-Yes | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 543 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Non-receptor protein tyrosine kinase that is involved in the regulation of cell growth and survival, apoptosis, cell-cell adhesion, cytoskeleton remodeling, and differentiation. Stimulation by receptor tyrosine kinases (RTKs) including EGRF, PDGFR, CSF1R and FGFR leads to recruitment of YES1 to the phosphorylated receptor, and activation and phosphorylation of downstream substrates. Upon EGFR activation, promotes the phosphorylation of PARD3 to favor epithelial tight junction assembly. Participates in the phosphorylation of specific junctional components such as CTNND1 by stimulating the FYN and FER tyrosine kinases at cell-cell contacts. Upon T-cell stimulation by CXCL12, phosphorylates collapsin response mediator protein 2/DPYSL2 and induces T-cell migration. Participates in CD95L/FASLG signaling pathway and mediates AKT-mediated cell migration. Plays a role in cell cycle progression by phosphorylating the cyclin-dependent kinase 4/CDK4 thus regulating the G1 phase. Also involved in G2/M progression and cytokinesis. Ref.10 Ref.12 Ref.13 Ref.17 Ref.20 Ref.21 |
| Catalytic activity | ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate. |
| Subunit structure | Interacts with YAP1 and CSF1R By similarity. Interacts with CTNND1; this interaction allows YES1-mediated activation of FYN and FER and subsequent phosphorylation of CTNND1 By similarity. Interacts with FASLG. Ref.16 |
| Subcellular location | Cell membrane. Cytoplasm › cytoskeleton › centrosome. Cytoplasm › cytosol. Note: Newly synthesized protein initially accumulates in the Golgi region and traffics to the plasma membrane through the exocytic pathway. Ref.10 Ref.18 Ref.20 |
| Tissue specificity | Expressed in the epithelial cells of renal proximal tubules and stomach as well as hematopoietic cells in the bone marrow and spleen in the fetal tissues. In adult, expressed in epithelial cells of the renal proximal tubules and present in keratinocytes in the basal epidermal layer of epidermis. Ref.5 Ref.6 |
| Post-translational modification | Phosphorylation by CSK on the C-terminal tail maintains the enzyme in an inactive state. Autophosphorylation at Tyr-426 maintains enzyme activity by blocking CSK-mediated inhibition. Palmitoylation at Cys-3 promotes membrane localization By similarity. Ref.7 |
| Sequence similarities | Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamily. Contains 1 protein kinase domain. Contains 1 SH2 domain. Contains 1 SH3 domain. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||
Molecule processing | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 543 | 543 | Tyrosine-protein kinase Yes | PRO_0000088181 | ||||||||||||||||
Regions | ||||||||||||||||||||
| Domain | 91 – 152 | 62 | SH3 | |||||||||||||||||
| Domain | 158 – 255 | 98 | SH2 | |||||||||||||||||
| Domain | 277 – 530 | 254 | Protein kinase | |||||||||||||||||
| Nucleotide binding | 283 – 291 | 9 | ATP By similarity | |||||||||||||||||
Sites | ||||||||||||||||||||
| Active site | 396 | 1 | Proton acceptor By similarity | |||||||||||||||||
| Binding site | 305 | 1 | ATP By similarity | |||||||||||||||||
Amino acid modifications | ||||||||||||||||||||
| Modified residue | 11 | 1 | Phosphoserine | |||||||||||||||||
| Modified residue | 21 | 1 | Phosphothreonine Ref.15 | |||||||||||||||||
| Modified residue | 26 | 1 | Phosphoserine | |||||||||||||||||
| Modified residue | 32 | 1 | Phosphotyrosine | |||||||||||||||||
| Modified residue | 40 | 1 | Phosphoserine Ref.15 | |||||||||||||||||
| Modified residue | 111 | 1 | Phosphoserine | |||||||||||||||||
| Modified residue | 194 | 1 | Phosphotyrosine | |||||||||||||||||
| Modified residue | 195 | 1 | Phosphoserine | |||||||||||||||||
| Modified residue | 222 | 1 | Phosphotyrosine | |||||||||||||||||
| Modified residue | 223 | 1 | Phosphotyrosine | |||||||||||||||||
| Modified residue | 336 | 1 | Phosphotyrosine Ref.19 | |||||||||||||||||
| Modified residue | 345 | 1 | Phosphotyrosine Ref.19 | |||||||||||||||||
| Modified residue | 426 | 1 | Phosphotyrosine; by autocatalysis | |||||||||||||||||
| Modified residue | 446 | 1 | Phosphotyrosine | |||||||||||||||||
| Modified residue | 537 | 1 | Phosphotyrosine; by CSK Ref.14 Ref.19 | |||||||||||||||||
| Lipidation | 2 | 1 | N-myristoyl glycine By similarity | |||||||||||||||||
| Lipidation | 3 | 1 | S-palmitoyl cysteine; in membrane form By similarity | |||||||||||||||||
Natural variations | ||||||||||||||||||||
| Natural variant | 198 | 1 | I → V. Ref.23 Corresponds to variant rs34580680 [ dbSNP | Ensembl ]. | VAR_041879 | ||||||||||||||||
| Natural variant | 282 | 1 | K → R. Ref.23 Corresponds to variant rs35126906 [ dbSNP | Ensembl ]. | VAR_041880 | ||||||||||||||||
Experimental info | ||||||||||||||||||||
| Mutagenesis | 426 | 1 | Y → F: About 50% loss of CSK-mediated inhibition. Ref.9 | |||||||||||||||||
Secondary structure | ||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||
| Beta strand | 93 – 100 | 8 | ||||||||||||||||||
| Beta strand | 117 – 121 | 5 | ||||||||||||||||||
| Beta strand | 126 – 133 | 8 | ||||||||||||||||||
| Turn | 134 – 136 | 3 | ||||||||||||||||||
| Beta strand | 139 – 143 | 5 | ||||||||||||||||||
| Helix | 144 – 146 | 3 | ||||||||||||||||||
| Beta strand | 147 – 149 | 3 | ||||||||||||||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Characterization of cDNA clones for the human c-yes gene." Sukegawa J., Semba K., Yamanashi Y., Nishizawa M., Miyajima N., Yamamoto T., Toyoshima K. Mol. Cell. Biol. 7:41-47(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "DNA sequence and analysis of human chromosome 18." Nusbaum C., Zody M.C., Borowsky M.L., Kamal M., Kodira C.D., Taylor T.D., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Abouelleil A., Allen N.R., Anderson S., Bloom T., Bugalter B., Butler J. Lander E.S.Nature 437:551-555(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain. |
| [5] | "Distribution of c-yes-1 gene product in various cells and tissues." Sugawara K., Sugawara I., Sukegawa J., Akatsuka T., Yamamoto T., Morita M., Mori S., Toyoshima K. Br. J. Cancer 63:508-513(1991) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [6] | "Differential expression of p62c-yes in normal, hyperplastic and neoplastic human epidermis." Krueger J., Zhao Y.H., Murphy D., Sudol M. Oncogene 6:933-940(1991) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [7] | "Palmitoylation of multiple Src-family kinases at a homologous N-terminal motif." Koegl M., Zlatkine P., Ley S.C., Courtneidge S.A., Magee A.I. Biochem. J. 303:749-753(1994) [PubMed] [Europe PMC] [Abstract] Cited for: PALMITOYLATION. |
| [8] | "Expression, purification, and initial characterization of human Yes protein tyrosine kinase from a bacterial expression system." Sun G., Budde R.J. Arch. Biochem. Biophys. 345:135-142(1997) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION BY CSK. |
| [9] | "Autophosphorylation of Src and Yes blocks their inactivation by Csk phosphorylation." Sun G., Sharma A.K., Budde R.J. Oncogene 17:1587-1595(1998) [PubMed] [Europe PMC] [Abstract] Cited for: AUTOPHOSPHORYLATION, MUTAGENESIS OF TYR-426. |
| [10] | "CD46 is phosphorylated at tyrosine 354 upon infection of epithelial cells by Neisseria gonorrhoeae." Lee S.W., Bonnah R.A., Higashi D.L., Atkinson J.P., Milgram S.L., So M. J. Cell Biol. 156:951-957(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, PHOSPHORYLATION, FUNCTION. |
| [11] | "c-Yes response to growth factor activation." Clump D.A., Qazi I.H., Sudol M., Flynn D.C. Growth Factors 23:263-272(2005) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON FUNCTION. |
| [12] | "Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling." Wang Y., Du D., Fang L., Yang G., Zhang C., Zeng R., Ullrich A., Lottspeich F., Chen Z. EMBO J. 25:5058-5070(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN PHOSPHORYLATION OF PARD3. |
| [13] | "Phosphorylation of cyclin dependent kinase 4 on tyrosine 17 is mediated by Src family kinases." Martin N.G., McAndrew P.C., Eve P.D., Garrett M.D. FEBS J. 275:3099-3109(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN PHOSPHORYLATION OF CDK4. |
| [14] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-537, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [15] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-21 AND SER-40, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Identification of SH3 domain interaction partners of human FasL (CD178) by phage display screening." Voss M., Lettau M., Janssen O. BMC Immunol. 10:53-53(2009) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH FASLG. |
| [17] | "Phosphorylation of collapsin response mediator protein 2 on Tyr-479 regulates CXCL12-induced T lymphocyte migration." Varrin-Doyer M., Vincent P., Cavagna S., Auvergnon N., Noraz N., Rogemond V., Honnorat J., Moradi-Ameli M., Giraudon P. J. Biol. Chem. 284:13265-13276(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN PHOSPHORYLATION OF DPYSL2. |
| [18] | "Differential trafficking of Src, Lyn, Yes and Fyn is specified by the state of palmitoylation in the SH4 domain." Sato I., Obata Y., Kasahara K., Nakayama Y., Fukumoto Y., Yamasaki T., Yokoyama K.K., Saito T., Yamaguchi N. J. Cell Sci. 122:965-975(2009) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION. |
| [19] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-336; TYR-345 AND TYR-537, MASS SPECTROMETRY. |
| [20] | "Clues for c-Yes involvement in the cell cycle and cytokinesis." Jung J., Lee M.K., Jin Y., Fu S.B., Rosales J.L., Lee K.Y. Cell Cycle 10:1502-1503(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [21] | "The naturally processed CD95L elicits a c-yes/calcium/PI3K-driven cell migration pathway." Tauzin S., Chaigne-Delalande B., Selva E., Khadra N., Daburon S., Contin-Bordes C., Blanco P., Le Seyec J., Ducret T., Counillon L., Moreau J.F., Hofman P., Vacher P., Legembre P. PLoS Biol. 9:E1001090-E1001090(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [22] | "Crystallographic structure of the SH3 domain of the human c-Yes tyrosine kinase: loop flexibility and amyloid aggregation." Martin-Garcia J.M., Luque I., Mateo P.L., Ruiz-Sanz J., Camara-Artigas A. FEBS Lett. 581:1701-1706(2007) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 91-152. |
| [23] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] VAL-198 AND ARG-282. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M15990 mRNA. Translation: AAA35735.1. AP001178 Genomic DNA. No translation available. CH471113 Genomic DNA. Translation: EAX01709.1. CH471113 Genomic DNA. Translation: EAX01710.1. BC048960 mRNA. Translation: AAH48960.1. | ||||||||||||
| IPI | IPI00013981. | ||||||||||||
| PIR | TVHUYS. A26714. | ||||||||||||
| RefSeq | NP_005424.1. NM_005433.3. | ||||||||||||
| UniGene | Hs.194148. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | P07947. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-33849N. | ||||||||||||
| IntAct | P07947. 10 interactions. | ||||||||||||
| MINT | MINT-93566. | ||||||||||||
| STRING | 9606.ENSP00000324740. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P07947. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 125870. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P07947. | ||||||||||||
| PRIDE | P07947. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 7525. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000314574; ENSP00000324740; ENSG00000176105. ENST00000584307; ENSP00000462468; ENSG00000176105. | ||||||||||||
| GeneID | 7525. | ||||||||||||
| KEGG | hsa:7525. | ||||||||||||
| UCSC | uc002kky.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 7525. | ||||||||||||
| GeneCards | GC18M000721. | ||||||||||||
| HGNC | HGNC:12841. YES1. | ||||||||||||
| HPA | CAB004370. HPA026480. | ||||||||||||
| MIM | 164880. gene. | ||||||||||||
| neXtProt | NX_P07947. | ||||||||||||
| PharmGKB | PA37432. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0515. | ||||||||||||
| HOGENOM | HOG000233858. | ||||||||||||
| HOVERGEN | HBG008761. | ||||||||||||
| InParanoid | P07947. | ||||||||||||
| KO | K05705. | ||||||||||||
| OMA | IKYRTEN. | ||||||||||||
| OrthoDB | EOG4KKZ2S. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BRENDA | 2.7.10.2. 2681. | ||||||||||||
| Pathway_Interaction_DB | alphasynuclein_pathway. Alpha-synuclein signaling. amb2_neutrophils_pathway. amb2 Integrin signaling. pi3kcipathway. Class I PI3K signaling events. epha_fwdpathway. EPHA forward signaling. ephrinbrevpathway. Ephrin B reverse signaling. glypican_1pathway. Glypican 1 network. wnt_calcium_pathway. Noncanonical Wnt signaling pathway. pdgfrbpathway. PDGFR-beta signaling pathway. p38alphabetapathway. Regulation of p38-alpha and p38-beta. ptp1bpathway. Signaling events mediated by PTP1B. vegfr1_2_pathway. Signaling events mediated by VEGFR1 and VEGFR2. txa2pathway. Thromboxane A2 receptor signaling. | ||||||||||||
| Reactome | REACT_111102. Signal Transduction. REACT_604. Hemostasis. REACT_6900. Immune System. | ||||||||||||
| SignaLink | P07947. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | P07947. | ||||||||||||
| CleanEx | HS_YES1. | ||||||||||||
| Genevestigator | P07947. | ||||||||||||
| GermOnline | ENSG00000176105. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.505.10. 1 hit. | ||||||||||||
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR001245. Ser-Thr/Tyr_kinase_cat_dom. IPR000980. SH2. IPR001452. SH3_domain. IPR008266. Tyr_kinase_AS. IPR020635. Tyr_kinase_cat_dom. [Graphical view] | ||||||||||||
| Pfam | PF07714. Pkinase_Tyr. 1 hit. PF00017. SH2. 1 hit. PF00018. SH3_1. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00401. SH2DOMAIN. PR00452. SH3DOMAIN. PR00109. TYRKINASE. | ||||||||||||
| SMART | SM00252. SH2. 1 hit. SM00326. SH3. 1 hit. SM00219. TyrKc. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF56112. Kinase_like. 1 hit. SSF50044. SH3. 1 hit. | ||||||||||||
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. PS50001. SH2. 1 hit. PS50002. SH3. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| BindingDB | P07947. | ||||||||||||
| ChEMBL | CHEMBL2073. | ||||||||||||
| DrugBank | DB01254. Dasatinib. | ||||||||||||
| EvolutionaryTrace | P07947. | ||||||||||||
| GenomeRNAi | 7525. | ||||||||||||
| NextBio | 29441. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | YES_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P07947 Secondary accession number(s): A6NLB3, D3DUH1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 18 Human chromosome 18: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
