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Protein

Protein sigma-1-small

Gene

S1

Organism
Reovirus type 1 (strain Lang) (T1L) (Mammalian orthoreovirus 1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host G2/M cell cycle arrest by virus, Host-virus interaction, Modulation of host cell cycle by virus

Names & Taxonomyi

Protein namesi
Recommended name:
Protein sigma-1-small
Short name:
Sigma1s
Alternative name(s):
Sigma-s
Sigma1NS
Sigma1bNS
p14
Gene namesi
Name:S1
OrganismiReovirus type 1 (strain Lang) (T1L) (Mammalian orthoreovirus 1)
Taxonomic identifieri10884 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSpinareovirinaeOrthoreovirus
Virus hostiMammalia [TaxID: 40674]
Proteomesi
  • UP000007253 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 119119Protein sigma-1-smallPRO_0000222757Add
BLAST

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR003478. Capsid_sigma_1s.
[Graphical view]
PfamiPF02454. Sigma_1s. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P07938-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSQKKSRK SRNKSRSTLM ISGLPILNST DLEDRLLTSA IASQPLSQDW
60 70 80 90 100
VRWIIDLWVS RVRSRNYLTQ VARTLRAYPH WVTESMLSNH ELTVWIRSRL
110
ISLDEHPLWR QMLEAYGQN
Length:119
Mass (Da):13,989
Last modified:August 1, 1988 - v1
Checksum:iD6EEE53353BC6190
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti71 – 711V → L in AAA47243 (PubMed:2430568).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10260 Genomic RNA. Translation: AAA66878.1.
M14779 Genomic RNA. Translation: AAA47277.1.
M35963 Genomic RNA. Translation: AAA47243.1.
PIRiB26436. MNXR1B.
B34829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10260 Genomic RNA. Translation: AAA66878.1.
M14779 Genomic RNA. Translation: AAA47277.1.
M35963 Genomic RNA. Translation: AAA47243.1.
PIRiB26436. MNXR1B.
B34829.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR003478. Capsid_sigma_1s.
[Graphical view]
PfamiPF02454. Sigma_1s. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSIG1S_REOVL
AccessioniPrimary (citable) accession number: P07938
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: January 7, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.