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P07883 (AGAR_STRCO) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Extracellular agarase

EC=3.2.1.81
Gene names
Name:dagA
Ordered Locus Names:SCO3471
ORF Names:SCE65.07c
OrganismStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) [Reference proteome] [HAMAP]
Taxonomic identifier100226 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomycesStreptomyces albidoflavus group

Protein attributes

Sequence length309 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, giving the tetramer as the predominant product.

Subcellular location

Secreted.

Post-translational modification

Predicted to be exported by the Tat system. The position of the signal peptide cleavage has been experimentally proven.

Sequence similarities

Belongs to the glycosyl hydrolase 16 family.

Ontologies

Keywords
   Cellular componentSecreted
   DomainSignal
   Molecular functionGlycosidase
Hydrolase
   Technical termComplete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionbeta-agarase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3030Tat-type signal Ref.1
Chain31 – 309279Extracellular agarase
PRO_0000011797

Sites

Active site1551Nucleophile By similarity
Active site1601Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
P07883 [UniParc].

Last modified July 1, 1989. Version 2.
Checksum: 18E479E642DB1A43

FASTA30935,164
        10         20         30         40         50         60 
MVNRRDLIKW SAVALGAGAG LAGPAPAAHA ADLEWEQYPV PAAPGGNRSW QLLPSHSDDF 

        70         80         90        100        110        120 
NYTGKPQTFR GRWLDQHKDG WSGPANSLYS ARHSWVADGN LIVEGRRAPD GRVYCGYVTS 

       130        140        150        160        170        180 
RTPVEYPLYT EVLMRVSGLK LSSNFWLLSR DDVNEIDVIE CYGNESLHGK HMNTAYHIFQ 

       190        200        210        220        230        240 
RNPFTELARS QKGYFADGSY GYNGETGQVF GDGAGQPLLR NGFHRYGVHW ISATEFDFYF 

       250        260        270        280        290        300 
NGRLVRRLNR SNDLRDPRSR FFDQPMHLIL NTESHQWRVD RGIEPTDAEL ADPSINNIYY 


RWVRTYQAV 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X05811 Genomic DNA. Translation: CAA29257.1.
AL939116 Genomic DNA. Translation: CAB61795.1.
PIREUSMAG. S07322.
RefSeqNP_627674.1. NC_003888.3.

3D structure databases

ProteinModelPortalP07883.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING100226.SCO3471.

Protein family/group databases

CAZyGH16. Glycoside Hydrolase Family 16.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB61795; CAB61795; CAB61795.
GeneID1098908.
KEGGsco:SCO3471.
PATRIC23736692. VBIStrCoe124346_3531.

Phylogenomic databases

KOK01219.
OMAHWISATE.
OrthoDBEOG6T1WW5.

Family and domain databases

Gene3D2.60.120.200. 1 hit.
InterProIPR016287. Agarase.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000757. Glyco_hydro_16.
IPR008263. Glycoside_hydrolase_16_AS.
IPR006311. TAT_signal.
[Graphical view]
PfamPF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
PIRSFPIRSF001097. Agarase. 1 hit.
SUPFAMSSF49899. SSF49899. 1 hit.
PROSITEPS01034. GLYCOSYL_HYDROL_F16. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameAGAR_STRCO
AccessionPrimary (citable) accession number: P07883
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: July 1, 1989
Last modified: May 14, 2014
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries