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Protein

Ferredoxin, chloroplastic

Gene

PETF

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Cofactori

[2Fe-2S] clusterNote: Binds 1 [2Fe-2S] cluster.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi69Iron-sulfur (2Fe-2S)1
Metal bindingi74Iron-sulfur (2Fe-2S)1
Metal bindingi77Iron-sulfur (2Fe-2S)1
Metal bindingi107Iron-sulfur (2Fe-2S)1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin, chloroplastic
Gene namesi
Name:PETF
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 32Chloroplast1 PublicationAdd BLAST32
ChainiPRO_000000882833 – 126Ferredoxin, chloroplasticAdd BLAST94

Proteomic databases

PaxDbiP07839.

Interactioni

Subunit structurei

Forms a complex with heterodimeric ferredoxin-thioredoxin reductase (FTR) and thioredoxin.By similarity

Protein-protein interaction databases

STRINGi3055.EDP03827.

Structurei

Secondary structure

1126
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 12Combined sources10
Helixi16 – 18Combined sources3
Turni19 – 22Combined sources4
Beta strandi23 – 25Combined sources3
Beta strandi33 – 39Combined sources7
Beta strandi42 – 48Combined sources7
Beta strandi50 – 52Combined sources3
Helixi54 – 61Combined sources8
Helixi75 – 77Combined sources3
Beta strandi80 – 84Combined sources5
Beta strandi86 – 90Combined sources5
Helixi96 – 101Combined sources6
Beta strandi111 – 118Combined sources8
Helixi123 – 126Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FCTNMR-A1-32[»]
2MH7NMR-A33-126[»]
2N0SNMR-B33-126[»]
ProteinModelPortaliP07839.
SMRiP07839.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07839.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 1232Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Belongs to the 2Fe2S plant-type ferredoxin family.Curated
Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410J0RP. Eukaryota.
COG0633. LUCA.
KOiK02639.
OMAiCTINTHQ.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
IPR023383. Ferredoxin_transit_pept.
[Graphical view]
PfamiPF11591. 2Fe-2S_Ferredox. 1 hit.
PF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P07839-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMAMRSTFA ARVGAKPAVR GARPASRMSC MAYKVTLKTP SGDKTIECPA
60 70 80 90 100
DTYILDAAEE AGLDLPYSCR AGACSSCAGK VAAGTVDQSD QSFLDDAQMG
110 120
NGFVLTCVAY PTSDCTIQTH QEEALY
Length:126
Mass (Da):13,232
Last modified:February 1, 1994 - v2
Checksum:i155AFEA9E6F6E411
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29516 Genomic DNA. Translation: AAC49171.1.
L10349 mRNA. Translation: AAA33085.1.
PIRiT08054. FEKM.
RefSeqiXP_001692808.1. XM_001692756.1.
UniGeneiCre.8738.

Genome annotation databases

EnsemblPlantsiEDP03827; EDP03827; CHLREDRAFT_147787.
GeneIDi5718285.
GrameneiEDP03827; EDP03827; CHLREDRAFT_147787.
KEGGicre:CHLREDRAFT_147787.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29516 Genomic DNA. Translation: AAC49171.1.
L10349 mRNA. Translation: AAA33085.1.
PIRiT08054. FEKM.
RefSeqiXP_001692808.1. XM_001692756.1.
UniGeneiCre.8738.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FCTNMR-A1-32[»]
2MH7NMR-A33-126[»]
2N0SNMR-B33-126[»]
ProteinModelPortaliP07839.
SMRiP07839.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.EDP03827.

Proteomic databases

PaxDbiP07839.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEDP03827; EDP03827; CHLREDRAFT_147787.
GeneIDi5718285.
GrameneiEDP03827; EDP03827; CHLREDRAFT_147787.
KEGGicre:CHLREDRAFT_147787.

Phylogenomic databases

eggNOGiENOG410J0RP. Eukaryota.
COG0633. LUCA.
KOiK02639.
OMAiCTINTHQ.

Miscellaneous databases

EvolutionaryTraceiP07839.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
IPR023383. Ferredoxin_transit_pept.
[Graphical view]
PfamiPF11591. 2Fe-2S_Ferredox. 1 hit.
PF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiFER_CHLRE
AccessioniPrimary (citable) accession number: P07839
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: February 1, 1994
Last modified: November 30, 2016
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.