Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Major actin

Gene

act1

more
Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Multiple isoforms are involved in various cellular functions such as cytoskeleton structure, cell mobility, chromosome movement and muscle contraction.

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • myosin binding Source: dictyBase
  • structural constituent of cytoskeleton Source: dictyBase

GO - Biological processi

  • cell morphogenesis Source: dictyBase
  • chemotaxis Source: dictyBase
  • endocytosis Source: dictyBase
  • hyperosmotic response Source: dictyBase
  • mitotic cytokinesis Source: dictyBase
  • phagocytosis Source: dictyBase
  • phototaxis Source: dictyBase
  • vesicle-mediated transport Source: dictyBase
Complete GO annotation...

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Major actin
Alternative name(s):
Actin A1
Actin A12
Actin A8
Actin III
Actin M6
Actin-1
Actin-11
Actin-12
Actin-13
Actin-14
Actin-15
Actin-16
Actin-19
Actin-2
Actin-2-sub 1
Actin-20
Actin-21
Actin-3a
Actin-4
Actin-5
Actin-6
Actin-7
Actin-8
Actin-9
Actin-IEL1
Gene namesi
Name:act1
Synonyms:act1a
ORF Names:DDB_G0289553
AND
Name:act2
Synonyms:act2-1
ORF Names:DDB_G0274133
AND
Name:act4
ORF Names:DDB_G0289005
AND
Name:act5
ORF Names:DDB_G0289663
AND
Name:act6
ORF Names:DDB_G0274135
AND
Name:act7
ORF Names:DDB_G0280545
AND
Name:act8
Synonyms:actA8
ORF Names:DDB_G0269234
AND
Name:act9
ORF Names:DDB_G0274601
AND
Name:act11
ORF Names:DDB_G0288879
AND
Name:act12
ORF Names:DDB_G0274129
AND
Name:act13
ORF Names:DDB_G0274599
AND
Name:act14
Synonyms:actB1
ORF Names:DDB_G0274137
AND
Name:act15
Synonyms:actA1
ORF Names:DDB_G0272520
AND
Name:act16
Synonyms:actM6
ORF Names:DDB_G0272248
AND
Name:act19
ORF Names:DDB_G0274727
AND
Name:act20
ORF Names:DDB_G0274285
AND
Name:act21
ORF Names:DDB_G0274561
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 1, Chromosome 2, Chromosome 3, Chromosome 5, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0289553. act1.
DDB_G0288879. act11.
DDB_G0274129. act12.
DDB_G0274599. act13.
DDB_G0274137. act14.
DDB_G0272520. act15.
DDB_G0272248. act16.
DDB_G0274727. act19.
DDB_G0274133. act2.
DDB_G0274285. act20.
DDB_G0274561. act21.
DDB_G0289005. act4.
DDB_G0289663. act5.
DDB_G0274135. act6.
DDB_G0280545. act7.
DDB_G0269234. act8.
DDB_G0274601. act9.

Subcellular locationi

GO - Cellular componenti

  • actin cytoskeleton Source: dictyBase
  • actin filament Source: dictyBase
  • cell leading edge Source: dictyBase
  • cell pole Source: dictyBase
  • cortical actin cytoskeleton Source: dictyBase
  • early phagosome Source: dictyBase
  • phagocytic cup Source: dictyBase
  • phagocytic vesicle Source: dictyBase
  • phagolysosome Source: dictyBase
  • pseudopodium Source: dictyBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00000889262 – 376Major actinAdd BLAST375

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei54Phosphotyrosine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP07830.
PRIDEiP07830.

2D gel databases

SWISS-2DPAGEP07830.

PTM databases

iPTMnetiP07830.

Interactioni

GO - Molecular functioni

  • myosin binding Source: dictyBase

Protein-protein interaction databases

DIPiDIP-40989N.
MINTiMINT-121645.
STRINGi44689.DDB0220456.

Structurei

Secondary structure

1376
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Beta strandi9 – 13Combined sources5
Beta strandi15 – 22Combined sources8
Beta strandi25 – 27Combined sources3
Beta strandi29 – 33Combined sources5
Beta strandi36 – 40Combined sources5
Beta strandi43 – 45Combined sources3
Helixi57 – 61Combined sources5
Turni62 – 65Combined sources4
Beta strandi66 – 69Combined sources4
Beta strandi71 – 73Combined sources3
Helixi80 – 92Combined sources13
Turni93 – 95Combined sources3
Helixi99 – 101Combined sources3
Beta strandi104 – 108Combined sources5
Helixi114 – 126Combined sources13
Beta strandi131 – 137Combined sources7
Helixi138 – 145Combined sources8
Beta strandi149 – 156Combined sources8
Beta strandi161 – 167Combined sources7
Helixi173 – 175Combined sources3
Beta strandi177 – 180Combined sources4
Helixi183 – 196Combined sources14
Helixi204 – 217Combined sources14
Helixi224 – 233Combined sources10
Beta strandi235 – 237Combined sources3
Beta strandi239 – 242Combined sources4
Beta strandi244 – 246Combined sources3
Beta strandi248 – 251Combined sources4
Helixi254 – 263Combined sources10
Helixi265 – 268Combined sources4
Helixi275 – 284Combined sources10
Helixi288 – 290Combined sources3
Helixi291 – 295Combined sources5
Beta strandi298 – 302Combined sources5
Helixi303 – 305Combined sources3
Helixi310 – 321Combined sources12
Helixi336 – 338Combined sources3
Helixi339 – 349Combined sources11
Helixi353 – 355Combined sources3
Beta strandi357 – 359Combined sources3
Helixi360 – 366Combined sources7
Helixi368 – 370Combined sources3
Helixi371 – 374Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1C0FX-ray2.40A2-376[»]
1C0GX-ray2.00A2-376[»]
1DEJX-ray2.40A2-376[»]
1NLVX-ray1.80A2-376[»]
1NM1X-ray1.80A2-376[»]
1NMDX-ray1.90A2-376[»]
3A5LX-ray2.40C2-376[»]
3A5MX-ray2.40C2-376[»]
3A5NX-ray2.36C2-376[»]
3A5OX-ray2.40C2-376[»]
3CHWX-ray2.30A2-376[»]
3CI5X-ray1.70A2-376[»]
3CIPX-ray1.60A2-376[»]
ProteinModelPortaliP07830.
SMRiP07830.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07830.

Family & Domainsi

Sequence similaritiesi

Belongs to the actin family.Curated

Phylogenomic databases

eggNOGiKOG0676. Eukaryota.
COG5277. LUCA.
InParanoidiP07830.
KOiK10355.
OMAiQMITIGA.
PhylomeDBiP07830.

Family and domain databases

InterProiIPR004000. Actin.
IPR020902. Actin/actin-like_CS.
IPR004001. Actin_CS.
[Graphical view]
PANTHERiPTHR11937. PTHR11937. 1 hit.
PfamiPF00022. Actin. 1 hit.
[Graphical view]
PRINTSiPR00190. ACTIN.
SMARTiSM00268. ACTIN. 1 hit.
[Graphical view]
PROSITEiPS00406. ACTINS_1. 1 hit.
PS00432. ACTINS_2. 1 hit.
PS01132. ACTINS_ACT_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P07830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDGEDVQALV IDNGSGMCKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ
60 70 80 90 100
KDSYVGDEAQ SKRGILTLKY PIEHGIVTNW DDMEKIWHHT FYNELRVAPE
110 120 130 140 150
EHPVLLTEAP LNPKANREKM TQIMFETFNT PAMYVAIQAV LSLYASGRTT
160 170 180 190 200
GIVMDSGDGV SHTVPIYEGY ALPHAILRLD LAGRDLTDYM MKILTERGYS
210 220 230 240 250
FTTTAEREIV RDIKEKLAYV ALDFEAEMQT AASSSALEKS YELPDGQVIT
260 270 280 290 300
IGNERFRCPE ALFQPSFLGM ESAGIHETTY NSIMKCDVDI RKDLYGNVVL
310 320 330 340 350
SGGTTMFPGI ADRMNKELTA LAPSTMKIKI IAPPERKYSV WIGGSILASL
360 370
STFQQMWISK EEYDESGPSI VHRKCF
Length:376
Mass (Da):41,733
Last modified:January 23, 2007 - v2
Checksum:i3610737F3B525123
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti31V → L in CAA23479 (PubMed:293714).Curated1
Sequence conflicti32F → S in CAA27032 (PubMed:3003365).Curated1
Sequence conflicti41H → Y in CAA23479 (PubMed:293714).Curated1
Sequence conflicti57D → E in CAA27032 (PubMed:3003365).Curated1
Sequence conflicti109A → G in CAA27032 (PubMed:3003365).Curated1
Sequence conflicti140V → A in CAA27032 (PubMed:3003365).Curated1
Sequence conflicti145A → E in AAA74186 (Ref. 5) Curated1
Sequence conflicti226A → Q AA sequence (PubMed:6892652).Curated1
Sequence conflicti228M → I in AAA74186 (Ref. 5) Curated1
Sequence conflicti229Q → A AA sequence (PubMed:6892652).Curated1
Sequence conflicti313R → G in AAA51619 (PubMed:6276562).Curated1
Sequence conflicti313R → G in AAA33148 (PubMed:6276562).Curated1
Sequence conflicti313R → G in AAA33157 (PubMed:6276562).Curated1
Sequence conflicti357W → L in AAA33152 (PubMed:6276562).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03281 Genomic DNA. Translation: CAA27031.1.
X03282 Genomic DNA. Translation: CAA27032.1.
M14146 Genomic DNA. Translation: AAA33145.1.
AAFI02000005 Genomic DNA. Translation: EAL71967.1.
AAFI02000008 Genomic DNA. Translation: EAL71184.1.
AAFI02000008 Genomic DNA. Translation: EAL71276.1.
AAFI02000012 Genomic DNA. Translation: EAL69957.1.
AAFI02000012 Genomic DNA. Translation: EAL69959.1.
AAFI02000012 Genomic DNA. Translation: EAL69960.1.
AAFI02000012 Genomic DNA. Translation: EAL69961.1.
AAFI02000012 Genomic DNA. Translation: EAL70035.1.
AAFI02000012 Genomic DNA. Translation: EAL70173.1.
AAFI02000012 Genomic DNA. Translation: EAL70192.1.
AAFI02000012 Genomic DNA. Translation: EAL70193.1.
AAFI02000012 Genomic DNA. Translation: EAL70256.1.
AAFI02000037 Genomic DNA. Translation: EAL67074.1.
AAFI02000126 Genomic DNA. Translation: EAL62963.1.
AAFI02000129 Genomic DNA. Translation: EAL62918.1.
AAFI02000142 Genomic DNA. Translation: EAL62666.1.
AAFI02000148 Genomic DNA. Translation: EAL62543.1.
U25660 Genomic DNA. Translation: AAA74186.1.
V00183 Genomic DNA. Translation: CAA23479.1.
V00186 Genomic DNA. Translation: CAA23482.1.
V00188 mRNA. Translation: CAA23484.1.
J01267 Genomic DNA. Translation: AAA33147.1.
J01273 Genomic DNA. Translation: AAA33151.1.
J01274 Genomic DNA. Translation: AAA33153.1.
J01276 Genomic DNA. Translation: AAA51618.1.
J01279 Genomic DNA. Translation: AAA33146.1.
J01265 mRNA. Translation: AAA33158.1.
J01270 mRNA. Translation: AAA33159.1.
J01272 Genomic DNA. Translation: AAA33160.1.
K02954 Genomic DNA. Translation: AAA33148.1.
K02958 Genomic DNA. Translation: AAA33152.1.
K02960 Genomic DNA. Translation: AAA51619.1.
J01278 mRNA. Translation: AAA33157.1.
PIRiA25084.
A39239.
A93223. ATDO.
B23412.
RefSeqiXP_636088.1. XM_630996.1.
XP_636169.1. XM_631077.1.
XP_636425.1. XM_631333.1.
XP_636507.1. XM_631415.1.
XP_641146.1. XM_636054.1.
XP_643986.1. XM_638894.1.
XP_643988.1. XM_638896.1.
XP_643989.1. XM_638897.1.
XP_643990.1. XM_638898.1.
XP_644132.1. XM_639040.1.
XP_644146.1. XM_639054.1.
XP_644157.1. XM_639065.1.
XP_644244.1. XM_639152.1.
XP_644246.1. XM_639154.1.
XP_645099.1. XM_640007.1.
XP_645262.1. XM_640170.1.
XP_646688.1. XM_641596.1.

Genome annotation databases

EnsemblProtistsiEAL62543; EAL62543; DDB_G0289663.
EAL62666; EAL62666; DDB_G0289553.
EAL62918; EAL62918; DDB_G0289005.
EAL62963; EAL62963; DDB_G0288879.
EAL67074; EAL67074; DDB_G0280545.
EAL69957; EAL69957; DDB_G0274129.
EAL69959; EAL69959; DDB_G0274133.
EAL69960; EAL69960; DDB_G0274135.
EAL69961; EAL69961; DDB_G0274137.
EAL70035; EAL70035; DDB_G0274285.
EAL70173; EAL70173; DDB_G0274561.
EAL70192; EAL70192; DDB_G0274599.
EAL70193; EAL70193; DDB_G0274601.
EAL70256; EAL70256; DDB_G0274727.
EAL71184; EAL71184; DDB_G0272520.
EAL71276; EAL71276; DDB_G0272248.
EAL71967; EAL71967; DDB_G0269234.
GeneIDi8617663.
8618428.
8618493.
8619412.
8619414.
8619415.
8619416.
8619562.
8619575.
8619586.
8619672.
8619674.
8622703.
8626890.
8626916.
8627198.
8627300.
KEGGiddi:DDB_G0269234.
ddi:DDB_G0272248.
ddi:DDB_G0272520.
ddi:DDB_G0274129.
ddi:DDB_G0274133.
ddi:DDB_G0274135.
ddi:DDB_G0274137.
ddi:DDB_G0274285.
ddi:DDB_G0274561.
ddi:DDB_G0274599.
ddi:DDB_G0274601.
ddi:DDB_G0274727.
ddi:DDB_G0280545.
ddi:DDB_G0288879.
ddi:DDB_G0289005.
ddi:DDB_G0289553.
ddi:DDB_G0289663.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03281 Genomic DNA. Translation: CAA27031.1.
X03282 Genomic DNA. Translation: CAA27032.1.
M14146 Genomic DNA. Translation: AAA33145.1.
AAFI02000005 Genomic DNA. Translation: EAL71967.1.
AAFI02000008 Genomic DNA. Translation: EAL71184.1.
AAFI02000008 Genomic DNA. Translation: EAL71276.1.
AAFI02000012 Genomic DNA. Translation: EAL69957.1.
AAFI02000012 Genomic DNA. Translation: EAL69959.1.
AAFI02000012 Genomic DNA. Translation: EAL69960.1.
AAFI02000012 Genomic DNA. Translation: EAL69961.1.
AAFI02000012 Genomic DNA. Translation: EAL70035.1.
AAFI02000012 Genomic DNA. Translation: EAL70173.1.
AAFI02000012 Genomic DNA. Translation: EAL70192.1.
AAFI02000012 Genomic DNA. Translation: EAL70193.1.
AAFI02000012 Genomic DNA. Translation: EAL70256.1.
AAFI02000037 Genomic DNA. Translation: EAL67074.1.
AAFI02000126 Genomic DNA. Translation: EAL62963.1.
AAFI02000129 Genomic DNA. Translation: EAL62918.1.
AAFI02000142 Genomic DNA. Translation: EAL62666.1.
AAFI02000148 Genomic DNA. Translation: EAL62543.1.
U25660 Genomic DNA. Translation: AAA74186.1.
V00183 Genomic DNA. Translation: CAA23479.1.
V00186 Genomic DNA. Translation: CAA23482.1.
V00188 mRNA. Translation: CAA23484.1.
J01267 Genomic DNA. Translation: AAA33147.1.
J01273 Genomic DNA. Translation: AAA33151.1.
J01274 Genomic DNA. Translation: AAA33153.1.
J01276 Genomic DNA. Translation: AAA51618.1.
J01279 Genomic DNA. Translation: AAA33146.1.
J01265 mRNA. Translation: AAA33158.1.
J01270 mRNA. Translation: AAA33159.1.
J01272 Genomic DNA. Translation: AAA33160.1.
K02954 Genomic DNA. Translation: AAA33148.1.
K02958 Genomic DNA. Translation: AAA33152.1.
K02960 Genomic DNA. Translation: AAA51619.1.
J01278 mRNA. Translation: AAA33157.1.
PIRiA25084.
A39239.
A93223. ATDO.
B23412.
RefSeqiXP_636088.1. XM_630996.1.
XP_636169.1. XM_631077.1.
XP_636425.1. XM_631333.1.
XP_636507.1. XM_631415.1.
XP_641146.1. XM_636054.1.
XP_643986.1. XM_638894.1.
XP_643988.1. XM_638896.1.
XP_643989.1. XM_638897.1.
XP_643990.1. XM_638898.1.
XP_644132.1. XM_639040.1.
XP_644146.1. XM_639054.1.
XP_644157.1. XM_639065.1.
XP_644244.1. XM_639152.1.
XP_644246.1. XM_639154.1.
XP_645099.1. XM_640007.1.
XP_645262.1. XM_640170.1.
XP_646688.1. XM_641596.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1C0FX-ray2.40A2-376[»]
1C0GX-ray2.00A2-376[»]
1DEJX-ray2.40A2-376[»]
1NLVX-ray1.80A2-376[»]
1NM1X-ray1.80A2-376[»]
1NMDX-ray1.90A2-376[»]
3A5LX-ray2.40C2-376[»]
3A5MX-ray2.40C2-376[»]
3A5NX-ray2.36C2-376[»]
3A5OX-ray2.40C2-376[»]
3CHWX-ray2.30A2-376[»]
3CI5X-ray1.70A2-376[»]
3CIPX-ray1.60A2-376[»]
ProteinModelPortaliP07830.
SMRiP07830.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-40989N.
MINTiMINT-121645.
STRINGi44689.DDB0220456.

PTM databases

iPTMnetiP07830.

2D gel databases

SWISS-2DPAGEP07830.

Proteomic databases

PaxDbiP07830.
PRIDEiP07830.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAL62543; EAL62543; DDB_G0289663.
EAL62666; EAL62666; DDB_G0289553.
EAL62918; EAL62918; DDB_G0289005.
EAL62963; EAL62963; DDB_G0288879.
EAL67074; EAL67074; DDB_G0280545.
EAL69957; EAL69957; DDB_G0274129.
EAL69959; EAL69959; DDB_G0274133.
EAL69960; EAL69960; DDB_G0274135.
EAL69961; EAL69961; DDB_G0274137.
EAL70035; EAL70035; DDB_G0274285.
EAL70173; EAL70173; DDB_G0274561.
EAL70192; EAL70192; DDB_G0274599.
EAL70193; EAL70193; DDB_G0274601.
EAL70256; EAL70256; DDB_G0274727.
EAL71184; EAL71184; DDB_G0272520.
EAL71276; EAL71276; DDB_G0272248.
EAL71967; EAL71967; DDB_G0269234.
GeneIDi8617663.
8618428.
8618493.
8619412.
8619414.
8619415.
8619416.
8619562.
8619575.
8619586.
8619672.
8619674.
8622703.
8626890.
8626916.
8627198.
8627300.
KEGGiddi:DDB_G0269234.
ddi:DDB_G0272248.
ddi:DDB_G0272520.
ddi:DDB_G0274129.
ddi:DDB_G0274133.
ddi:DDB_G0274135.
ddi:DDB_G0274137.
ddi:DDB_G0274285.
ddi:DDB_G0274561.
ddi:DDB_G0274599.
ddi:DDB_G0274601.
ddi:DDB_G0274727.
ddi:DDB_G0280545.
ddi:DDB_G0288879.
ddi:DDB_G0289005.
ddi:DDB_G0289553.
ddi:DDB_G0289663.

Organism-specific databases

dictyBaseiDDB_G0289553. act1.
DDB_G0288879. act11.
DDB_G0274129. act12.
DDB_G0274599. act13.
DDB_G0274137. act14.
DDB_G0272520. act15.
DDB_G0272248. act16.
DDB_G0274727. act19.
DDB_G0274133. act2.
DDB_G0274285. act20.
DDB_G0274561. act21.
DDB_G0289005. act4.
DDB_G0289663. act5.
DDB_G0274135. act6.
DDB_G0280545. act7.
DDB_G0269234. act8.
DDB_G0274601. act9.

Phylogenomic databases

eggNOGiKOG0676. Eukaryota.
COG5277. LUCA.
InParanoidiP07830.
KOiK10355.
OMAiQMITIGA.
PhylomeDBiP07830.

Miscellaneous databases

EvolutionaryTraceiP07830.
PROiP07830.

Family and domain databases

InterProiIPR004000. Actin.
IPR020902. Actin/actin-like_CS.
IPR004001. Actin_CS.
[Graphical view]
PANTHERiPTHR11937. PTHR11937. 1 hit.
PfamiPF00022. Actin. 1 hit.
[Graphical view]
PRINTSiPR00190. ACTIN.
SMARTiSM00268. ACTIN. 1 hit.
[Graphical view]
PROSITEiPS00406. ACTINS_1. 1 hit.
PS00432. ACTINS_2. 1 hit.
PS01132. ACTINS_ACT_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiACT1_DICDI
AccessioniPrimary (citable) accession number: P07830
Secondary accession number(s): P02577
, P07827, Q23856, Q23875, Q23877, Q23879, Q23880, Q54H30, Q7KWV6, Q94466
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 133 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.