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P07528

- XYNA_BACHD

UniProt

P07528 - XYNA_BACHD

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Protein

Endo-1,4-beta-xylanase A

Gene

xynA

Organism
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

pH dependencei

Active over a very broad pH range.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei195 – 1951Proton donorBy similarity
Active sitei301 – 3011NucleophilePROSITE-ProRule annotation

GO - Molecular functioni

  1. endo-1,4-beta-xylanase activity Source: UniProtKB-EC

GO - Biological processi

  1. xylan catabolic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradation

Enzyme and pathway databases

BioCyciBHAL272558:GJC5-2204-MONOMER.
UniPathwayiUPA00114.

Protein family/group databases

CAZyiGH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanase A (EC:3.2.1.8)
Short name:
Xylanase A
Alternative name(s):
1,4-beta-D-xylan xylanohydrolase A
Gene namesi
Name:xynA
Ordered Locus Names:BH2120
OrganismiBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Taxonomic identifieri272558 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001258: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 28281 PublicationAdd
BLAST
Chaini29 – 396368Endo-1,4-beta-xylanase APRO_0000007967Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272558.BH2120.

Structurei

Secondary structure

1
396
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi51 – 533Combined sources
Helixi57 – 604Combined sources
Turni61 – 644Combined sources
Beta strandi66 – 716Combined sources
Helixi73 – 753Combined sources
Helixi78 – 8710Combined sources
Beta strandi89 – 957Combined sources
Helixi99 – 1024Combined sources
Helixi112 – 12413Combined sources
Beta strandi127 – 1304Combined sources
Beta strandi133 – 1386Combined sources
Helixi141 – 1444Combined sources
Helixi152 – 1543Combined sources
Helixi158 – 18326Combined sources
Turni184 – 1863Combined sources
Beta strandi188 – 1958Combined sources
Beta strandi201 – 2033Combined sources
Helixi207 – 2126Combined sources
Helixi215 – 22814Combined sources
Beta strandi234 – 2396Combined sources
Helixi244 – 25916Combined sources
Beta strandi266 – 2694Combined sources
Beta strandi272 – 2765Combined sources
Helixi280 – 29112Combined sources
Turni292 – 2943Combined sources
Beta strandi296 – 30712Combined sources
Helixi318 – 3203Combined sources
Helixi323 – 34220Combined sources
Helixi344 – 3463Combined sources
Beta strandi347 – 35610Combined sources
Helixi361 – 3699Combined sources
Turni370 – 3723Combined sources
Beta strandi379 – 3813Combined sources
Beta strandi385 – 3873Combined sources
Helixi389 – 3957Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2UWFX-ray2.10A48-396[»]
ProteinModelPortaliP07528.
SMRiP07528. Positions 47-396.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07528.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3693.
HOGENOMiHOG000019847.
KOiK01181.
OMAiGAAVEPY.
OrthoDBiEOG6B363F.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00591. GLYCOSYL_HYDROL_F10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P07528-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MITLFRKPFV AGLAISLLVG GGIGNVAAAQ GGPPKSGVFG ENEKRNDQPF
60 70 80 90 100
AWQVASLSER YQEQFDIGAA VEPYQLEGRQ AQILKHHYNS LVAENAMKPE
110 120 130 140 150
SLQPREGEWN WEGADKIVEF ARKHNMELRF HTLVWHSQVP EWFFIDEDGN
160 170 180 190 200
RMVDETDPDK REANKQLLLE RMENHIKTVV ERYKDDVTSW DVVNEVIDDG
210 220 230 240 250
GGLRESEWYQ ITGTDYIKVA FETARKYGGE EAKLYINDYN TEVPSKRDDL
260 270 280 290 300
YNLVKDLLEQ GVPIDGVGHQ SHIQIGWPSI EDTRASFEKF TSLGLDNQVT
310 320 330 340 350
ELDMSLYGWP PTGAYTSYDD IPAELLQAQA DRYDQLFELY EELAADISSV
360 370 380 390
TFWGIADNHT WLDGRAREYN NGVGIDAPFV FDHNYRVKPA YWRIID
Length:396
Mass (Da):45,294
Last modified:April 1, 1988 - v1
Checksum:i29C1F46BE00E180C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D00087 Genomic DNA. Translation: BAA00055.1.
BA000004 Genomic DNA. Translation: BAB05839.1.
PIRiH83914.
JD0003.
RefSeqiNP_242986.1. NC_002570.2.

Genome annotation databases

EnsemblBacteriaiBAB05839; BAB05839; BAB05839.
GeneIDi891394.
KEGGibha:BH2120.
PATRICi18941396. VBIBacHal18977_2211.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D00087 Genomic DNA. Translation: BAA00055.1 .
BA000004 Genomic DNA. Translation: BAB05839.1 .
PIRi H83914.
JD0003.
RefSeqi NP_242986.1. NC_002570.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2UWF X-ray 2.10 A 48-396 [» ]
ProteinModelPortali P07528.
SMRi P07528. Positions 47-396.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272558.BH2120.

Protein family/group databases

CAZyi GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB05839 ; BAB05839 ; BAB05839 .
GeneIDi 891394.
KEGGi bha:BH2120.
PATRICi 18941396. VBIBacHal18977_2211.

Phylogenomic databases

eggNOGi COG3693.
HOGENOMi HOG000019847.
KOi K01181.
OMAi GAAVEPY.
OrthoDBi EOG6B363F.

Enzyme and pathway databases

UniPathwayi UPA00114 .
BioCyci BHAL272558:GJC5-2204-MONOMER.

Miscellaneous databases

EvolutionaryTracei P07528.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
Pfami PF00331. Glyco_hydro_10. 1 hit.
[Graphical view ]
PRINTSi PR00134. GLHYDRLASE10.
SMARTi SM00633. Glyco_10. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
PROSITEi PS00591. GLYCOSYL_HYDROL_F10. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the xylanase A gene of alkalophilic Bacillus sp. strain C-125."
    Hamamoto T., Honda H., Kudo T., Horikoshi K.
    Agric. Biol. Chem. 51:953-955(1987)
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF N-TERMINUS.
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.
  2. "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis."
    Takami H., Nakasone K., Takaki Y., Maeno G., Sasaki R., Masui N., Fuji F., Hirama C., Nakamura Y., Ogasawara N., Kuhara S., Horikoshi K.
    Nucleic Acids Res. 28:4317-4331(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125.

Entry informationi

Entry nameiXYNA_BACHD
AccessioniPrimary (citable) accession number: P07528
Secondary accession number(s): Q9JPV5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: April 1, 1988
Last modified: November 26, 2014
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3