Reviewed,
UniProtKB/Swiss-Prot P07259 (PYR1_YEAST)
Last modified
November 24, 2009.
Version 130.
History...
Clusters with 100%,
90%,
50% identity |
Documents (4) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Protein URA1 Including the following 2 domains: 1- Recommended name: Glutamine-dependent carbamoyl-phosphate synthase EC=6.3.5.5 2- Recommended name: Aspartate carbamoyltransferase EC=2.1.3.2 | ||||||
| Gene names |
| ||||||
| Organism | Saccharomyces cerevisiae (Baker's yeast) [Complete proteome] | ||||||
| Taxonomic identifier | 4932 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces |
Protein attributes
| Sequence length | 2214 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | This protein is a "fusion" protein encoding three enzymatic activities of the pyrimidine pathway (GATase, CPSase, and ATCase). |
| Catalytic activity | 2 ATP + L-glutamine + HCO3- + H2O = 2 ADP + phosphate + L-glutamate + carbamoyl phosphate. Carbamoyl phosphate + L-aspartate = phosphate + N-carbamoyl-L-aspartate. |
| Pathway | |
| Domain | The DHOase domain is defective. |
| Miscellaneous | GATase (glutamine amidotransferase) and CPSase (carbamoyl phosphate synthase) form together the glutamine-dependent CPSase (GD-CPSase) (EC 6.3.5.5). In eukaryotes EC 6.3.5.5 is synthesized by two pathway-specific (arginine and pyrimidine) genes under separate control. Present with 11000 molecules/cell in log phase SD medium. Ref.11 |
| Sequence similarities | In the central section; belongs to the DHOase family. Contains 2 ATP-grasp domains. Contains 1 glutamine amidotransferase type-1 domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PDS5 | Q04264 | 1 | EBI-14372,EBI-13077 | |
| STI1 | P15705 | 1 | EBI-14372,EBI-18418 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2214 | 2214 | Protein URA1 | PRO_0000199511 | |||||
Regions | |||||||||
| Domain | 228 – 413 | 186 | Glutamine amidotransferase type-1 | ||||||
| Domain | 562 – 754 | 193 | ATP-grasp 1 | ||||||
| Domain | 1099 – 1290 | 192 | ATP-grasp 2 | ||||||
| Region | 1 – 400 | 400 | GATase (Glutamine amidotransferase) | ||||||
| Region | 401 – 440 | 40 | Linker | ||||||
| Region | 441 – 1482 | 1042 | CPSase (Carbamoyl-phosphate synthase) | ||||||
| Region | 1483 – 1492 | 10 | Linker | ||||||
| Region | 1493 – 1821 | 329 | Defective DHOase domain | ||||||
| Region | 1822 – 1909 | 88 | Linker | ||||||
| Region | 1910 – 2214 | 305 | ATCase (Aspartate transcarbamylase) | ||||||
Sites | |||||||||
| Active site | 302 | 1 | For GATase activity By similarity | ||||||
| Active site | 386 | 1 | For GATase activity By similarity | ||||||
| Active site | 388 | 1 | For GATase activity By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1452 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 1453 | 1 | Phosphotyrosine Ref.16 | ||||||
| Modified residue | 1553 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 1857 | 1 | Phosphoserine; by PKA Ref.16 Ref.10 Ref.12 Ref.13 Ref.14 | ||||||
| Modified residue | 1859 | 1 | Phosphothreonine Ref.16 Ref.15 | ||||||
| Modified residue | 1986 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 2142 | 1 | Phosphoserine Ref.16 | ||||||
Experimental info | |||||||||
| Sequence conflict | 86 | 1 | H → D in CAA29068. Ref.3 | ||||||
| Sequence conflict | 123 | 1 | R → A in AAA68280. Ref.1 | ||||||
| Sequence conflict | 123 | 1 | R → A in CAA29068. Ref.3 | ||||||
| Sequence conflict | 250 – 257 | 8 | ELKVVPWN → RIESCSMD in CAA29068. Ref.3 | ||||||
| Sequence conflict | 270 | 1 | I → Y in CAA29068. Ref.3 | ||||||
| Sequence conflict | 313 – 314 | 2 | GA → VQ in CAA29068. Ref.3 | ||||||
| Sequence conflict | 372 – 373 | 2 | GI → RF in CAA29068. Ref.3 | ||||||
| Sequence conflict | 394 – 402 | 9 | RDTEFLFDV → EIQNSCLT in CAA29068. Ref.3 | ||||||
| Sequence conflict | 431 – 433 | 3 | KAH → QGT in CAA29068. Ref.3 | ||||||
| Sequence conflict | 482 | 1 | I → T in CAA29068. Ref.3 | ||||||
| Sequence conflict | 485 | 1 | I → N in CAA29068. Ref.3 | ||||||
| Sequence conflict | 492 | 1 | A → G in CAA29068. Ref.3 | ||||||
| Sequence conflict | 501 – 510 | 10 | TAEFVRKVIL → NAAKQRDVDR in CAA29068. Ref.3 | ||||||
| Sequence conflict | 1411 – 1412 | 2 | EV → S in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1582 | 1 | I → M in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1588 | 1 | N → K in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1592 | 1 | V → G in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1595 | 1 | S → A in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1872 | 1 | Missing AA sequence Ref.10 | ||||||
| Sequence conflict | 1937 | 1 | A → R in AAA68280. Ref.1 | ||||||
| Sequence conflict | 1937 | 1 | A → R in AAA35198. Ref.9 | ||||||
| Sequence conflict | 1997 | 1 | T → I in AAA35198. Ref.9 | ||||||
| Sequence conflict | 2039 | 1 | H → L in AAA35198. Ref.9 | ||||||
| Sequence conflict | 2158 – 2165 | 8 | KILAHAKE → VRSWHTQQK in AAA35198. Ref.9 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Organization of the yeast URA2 gene: identification of a defective dihydroorotase-like domain in the multifunctional carbamoylphosphate synthetase-aspartate transcarbamylase complex." Souciet J.-L., Nagy M., le Gouar M., Lacroute F., Potier S. Gene 79:59-70(1989) [PubMed: 2570735] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 28383 / FL100 / VTT C-80102. |
| [2] | "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X." Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K. Karpfinger-Hartl L.EMBO J. 15:2031-2049(1996) [PubMed: 8641269] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204508 / S288c. |
| [3] | "Nucleotide sequence of the pyrimidine specific carbamoyl phosphate synthetase, a part of the yeast multifunctional protein encoded by the URA2 gene." Souciet J.-L., Potier S., Hubert J.-C., Lacroute F. Mol. Gen. Genet. 207:314-319(1987) [PubMed: 3039294] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-510. Strain: ATCC 28383 / FL100 / VTT C-80102. |
| [4] | "Sequencing analysis of a 40.2 kb fragment of yeast chromosome X reveals 19 open reading frames including URA2 (5' end), TRK1, PBS2, SPT10, GCD14, RPE1, PHO86, NCA3, ASF1, CCT7, GZF3, two tRNA genes, three remnant delta elements and a Ty4 transposon." Cziepluch C., Kordes E., Pujol A., Jauniaux J.-C. Yeast 12:1471-1474(1996) [PubMed: 8948101] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-276. Strain: ATCC 96604 / S288c / FY1679. |
| [5] | "High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing." Juneau K., Palm C., Miranda M., Davis R.W. Proc. Natl. Acad. Sci. U.S.A. 104:1522-1527(2007) [PubMed: 17244705] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-117. Strain: ATCC 201390 / BY4743. |
| [6] | "Genome-wide identification of spliced introns using a tiling microarray." Zhang Z., Hesselberth J.R., Fields S. Genome Res. 17:503-509(2007) [PubMed: 17351133] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 14-119. Strain: ATCC 201390 / BY4743. |
| [7] | "Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI." Katsoulou C., Tzermia M., Tavernarakis N., Alexandraki D. Yeast 12:787-797(1996) [PubMed: 8813765] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 175-2214. Strain: ATCC 96604 / S288c / FY1679. |
| [8] | "Screening and identification of yeast sequences that cause growth inhibition when overexpressed." Akada R., Yamamoto J., Yamashita I. Mol. Gen. Genet. 254:267-274(1997) [PubMed: 9150260] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 838-877. |
| [9] | "The primary structure of the aspartate transcarbamylase region of the URA2 gene product in Saccharomyces cerevisiae. Features involved in activity and nuclear localization." Nagy M., le Gouar M., Potier S., Souciet J.-L., Herve G. J. Biol. Chem. 264:8366-8374(1989) [PubMed: 2498313] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1268-2214. |
| [10] | "Yeast carbamoyl-phosphate-synthetase--aspartate-transcarbamylase multidomain protein is phosphorylated in vitro by cAMP-dependent protein kinase." Denis-Duphil M., Lecaer J.-P., Hardie D.G., Carrey E.A. Eur. J. Biochem. 193:581-587(1990) [PubMed: 1977585] [Abstract] Cited for: PROTEIN SEQUENCE OF 1855-1874, PHOSPHORYLATION AT SER-1857. |
| [11] | "Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed: 14562106] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. |
| [12] | "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway." Gruhler A., Olsen J.V., Mohammed S., Mortensen P., Faergeman N.J., Mann M., Jensen O.N. Mol. Cell. Proteomics 4:310-327(2005) [PubMed: 15665377] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1857, MASS SPECTROMETRY. |
| [13] | "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae." Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P. J. Proteome Res. 6:1190-1197(2007) [PubMed: 17330950] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1857, MASS SPECTROMETRY. |
| [14] | "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry." Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L., Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F. Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007) [PubMed: 17287358] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1857, MASS SPECTROMETRY. |
| [15] | "Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases." Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H. Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007) [PubMed: 17563356] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1859, MASS SPECTROMETRY. |
| [16] | "A multidimensional chromatography technology for in-depth phosphoproteome analysis." Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H. Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed: 18407956] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1452; TYR-1453; SER-1553; SER-1857; THR-1859; SER-1986 AND SER-2142, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| M27174 Genomic DNA. Translation: AAA68280.1. Z49405 Genomic DNA. Translation: CAA89425.1. X05553 Genomic DNA. Translation: CAA29068.1. EF123133 mRNA. Translation: ABM97477.1. DQ881452 mRNA. Translation: ABI95879.1. X87371 Genomic DNA. Translation: CAA60825.1. D28139 Genomic DNA. Translation: BAA05680.1. J04711 Genomic DNA. Translation: AAA35198.1. | |
| PIR | QZBYU2. S56911. |
| RefSeq | NP_012405.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P07259. 417 interactions. |
| STRING | P07259. |
Proteomic databases | |
| PeptideAtlas | P07259. |
| PRIDE | P07259. |
Genome annotation databases | |
| Ensembl | YJL130C; YJL130C; YJL130C; Saccharomyces cerevisiae. [Genome view] |
| GeneID | 853311. |
| KEGG | sce:YJL130C. |
| NMPDR | fig|4932.3.peg.3372. |
Organism-specific databases | |
| CYGD | YJL130c. |
| SGD | S000003666. URA2. |
Phylogenomic databases | |
| HOGENOM | P07259. |
| OMA | TIQTSKG |
| OrthoDB | EOG9X9907 |
Enzyme and pathway databases | |
| BRENDA | 2.1.3.2. 250. 6.3.5.5. 250. |
Gene expression databases | |
| ArrayExpress | P07259. |
| Genevestigator | P07259. |
| GermOnline | YJL130C. Saccharomyces cerevisiae. |
Family and domain databases | |
| InterPro | IPR006132. Asp/Orn_carbamoyltranf_P_bd. IPR006130. Asp/Orn_carbamoylTrfase. IPR006131. Asp_carbamoyltransf_Asp/Orn_bd. IPR002082. Asp_carbamoyltransf_euk. IPR011761. ATP-grasp. IPR013816. ATP_grasp_subdomain_2. IPR001317. CarbamoylP_synth_GATase. IPR005483. CarbamoylP_synth_lsu. IPR005479. CarbamoylP_synth_lsu_ATP-bd. IPR006275. CarbamoylP_synth_lsu_Gln-dep. IPR005481. CarbamoylP_synth_lsu_N. IPR005480. CarbamoylP_synth_lsu_oligo. IPR006274. CarbamoylP_synth_ssu. IPR002474. CarbamoylP_synth_ssu_N. IPR011702. GATASE. IPR017926. GATASE_1. IPR000991. GATase_class1_C. IPR011607. MGS. IPR013817. Pre-ATP_grasp. IPR016185. PreATP-grasp-like. [Graphical view] |
| Gene3D | G3DSA:3.30.470.20. ATP_grasp_subdomain_2. 2 hits. G3DSA:3.40.50.20. Pre-ATP_grasp. 2 hits. |
| Pfam | PF00289. CPSase_L_chain. 2 hits. PF02786. CPSase_L_D2. 2 hits. PF02787. CPSase_L_D3. 1 hit. PF00988. CPSase_sm_chain. 1 hit. PF00117. GATase. 1 hit. PF02142. MGS. 1 hit. PF00185. OTCace. 1 hit. PF02729. OTCace_N. 1 hit. [Graphical view] |
| PRINTS | PR00100. AOTCASE. PR00101. ATCASE. PR00098. CPSASE. PR00099. CPSGATASE. PR00096. GATASE. |
| SMART | SM00851. MGS. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00670. asp_carb_tr. 1 hit. TIGR01369. CPSaseII_lrg. 1 hit. TIGR01368. CPSaseIIsmall. 1 hit. |
| PROSITE | PS50975. ATP_GRASP. 2 hits. PS00097. CARBAMOYLTRANSFERASE. 1 hit. PS00866. CPSASE_1. 2 hits. PS00867. CPSASE_2. 2 hits. PS51273. GATASE_TYPE_1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 973648. |
Entry information
| Entry name | PYR1_YEAST | ||||||||
| Accession | Primary (citable) accession number: P07259 Secondary accession number(s): A2TBN0, Q06HN1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | FPAP (Fungal Proteome Annotation Project) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |
| Yeast Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD |
| Yeast chromosome X Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names |

Clusters with


