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Protein

Coat protein

Gene
N/A
Organism
Enterobacteria phage GA (Bacteriophage GA)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Forms the phage shell; binds to the phage RNA.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiEnterobacteria phage GA (Bacteriophage GA)
Taxonomic identifieri12018 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageLeviviridaeLevivirus
Virus hostiEscherichia coli [TaxID: 562]
Proteomesi
  • UP000002126 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved; by hostBy similarity
Chaini2 – 130129Coat proteinPRO_0000164841Add
BLAST

Structurei

Secondary structure

1
130
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 104Combined sources
Beta strandi12 – 165Combined sources
Beta strandi18 – 247Combined sources
Helixi26 – 283Combined sources
Beta strandi30 – 367Combined sources
Helixi38 – 403Combined sources
Beta strandi43 – 519Combined sources
Turni52 – 543Combined sources
Beta strandi55 – 6511Combined sources
Beta strandi83 – 9311Combined sources
Helixi102 – 11110Combined sources
Helixi117 – 1248Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GAVX-ray3.400/1/2/3/4/5/6/7/8/9/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i2-130[»]
1UNAX-ray2.80A/B2-130[»]
ProteinModelPortaliP07234.
SMRiP07234. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07234.

Family & Domainsi

Family and domain databases

Gene3Di3.30.380.10. 1 hit.
InterProiIPR002703. Levivir_coat.
IPR015954. Phage_RNA-type_capsid.
[Graphical view]
PfamiPF01819. Levi_coat. 1 hit.
[Graphical view]
SUPFAMiSSF55405. SSF55405. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P07234-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLRSFVLV DNGGTGNVTV VPVSNANGVA EWLSNNSRSQ AYRVTASYRA
60 70 80 90 100
SGADKRKYAI KLEVPKIVTQ VVNGVELPGS AWKAYASIDL TIPIFAATDD
110 120 130
VTVISKSLAG LFKVGNPIAE AISSQSGFYA
Length:130
Mass (Da):13,683
Last modified:January 23, 2007 - v3
Checksum:i4FBB64DCC866CDA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03869 mRNA. Translation: CAA27497.1.
PIRiA29178. VCBPGA.

Cross-referencesi

Web resourcesi

Virus Particle ExploreR db

Icosahedral capsid structure with 4 residue deletion FG loop

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03869 mRNA. Translation: CAA27497.1.
PIRiA29178. VCBPGA.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GAVX-ray3.400/1/2/3/4/5/6/7/8/9/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i2-130[»]
1UNAX-ray2.80A/B2-130[»]
ProteinModelPortaliP07234.
SMRiP07234. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP07234.

Family and domain databases

Gene3Di3.30.380.10. 1 hit.
InterProiIPR002703. Levivir_coat.
IPR015954. Phage_RNA-type_capsid.
[Graphical view]
PfamiPF01819. Levi_coat. 1 hit.
[Graphical view]
SUPFAMiSSF55405. SSF55405. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete nucleotide sequence of the group II RNA coliphage GA."
    Inokuchi Y., Takahashi R., Hirose T., Inayama S., Jacobson A.B., Hirashima A.
    J. Biochem. 99:1169-1180(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The crystal structure of bacteriophage GA and a comparison of bacteriophages belonging to the major groups of Escherichia coli leviviruses."
    Tars K., Bundule M., Fridborg K., Liljas L.
    J. Mol. Biol. 271:759-773(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS).
  3. "Crystal structure of the coat protein from the GA bacteriophage: model of the unassembled dimer."
    Ni C.-Z., White C.A., Mitchell R.S., Wickersham J., Kodandapani R., Peabody D.S., Ely K.R.
    Protein Sci. 5:2485-2493(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS).

Entry informationi

Entry nameiCOAT_BPGA
AccessioniPrimary (citable) accession number: P07234
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: January 23, 2007
Last modified: December 9, 2015
This is version 90 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.