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Protein

Protein virC2

Gene

virC2

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: PAMGO_GAT

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciAGRO:ATU6179-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein virC2
Gene namesi
Name:virC2
Ordered Locus Names:Atu6179
ORF Names:AGR_pTi_16
Encoded oniPlasmid pTiC580 Publication
OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
Proteomesi
  • UP000000813 Componenti: Plasmid Ti

Pathology & Biotechi

Keywords - Diseasei

Crown gall tumor

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 202202Protein virC2PRO_0000065853Add
BLAST

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
virC1P071653EBI-7412655,EBI-7412683

Protein-protein interaction databases

IntActiP07166. 2 interactions.
MINTiMINT-4794307.

Structurei

Secondary structure

1
202
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi83 – 886Combined sources
Helixi97 – 1026Combined sources
Turni103 – 1053Combined sources
Helixi108 – 12821Combined sources
Helixi131 – 1344Combined sources
Beta strandi152 – 1576Combined sources
Helixi160 – 17011Combined sources
Helixi178 – 19922Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2RH3X-ray1.70A82-202[»]
ProteinModelPortaliP07166.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07166.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000091438.
OrthoDBiEOG6T4S24.

Family and domain databases

InterProiIPR010985. Ribbon_hlx_hlx.
IPR009841. VirC2.
[Graphical view]
PfamiPF07181. VirC2. 1 hit.
[Graphical view]
PIRSFiPIRSF016094. VirC2. 1 hit.
ProDomiPD022944. VirC2. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF47598. SSF47598. 1 hit.

Sequencei

Sequence statusi: Complete.

P07166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIRKPALSV GEARRLAAAR PEIVHPSLPV ATQNSTLPQP PENLDEEDRR
60 70 80 90 100
PAPATAKRCH SSDQQSMLTV DALSSTTAPE KIQVFLSARP PAPEVSKIYD
110 120 130 140 150
NLILQYSPSK SLQMILRRAL GDFENMLADG SFRAAPKSYP IPHTAFEKSI
160 170 180 190 200
IVQTSRMFPV SLIEAARNHF DPLGLETARA FGHKLATAAL ACFFAREKAT

NS
Length:202
Mass (Da):22,075
Last modified:April 1, 1988 - v1
Checksum:i4DD8C5F96C81F28F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00535 Genomic DNA. Translation: CAA68596.1.
M16397 Genomic DNA. Translation: AAA98387.1.
J03320 Genomic DNA. No translation available.
AE007871 Genomic DNA. Translation: AAK90941.2.
PIRiAI3249.
B25975.
RefSeqiNP_396500.2. NC_003065.3.
WP_010891491.1. NC_003065.3.

Genome annotation databases

EnsemblBacteriaiAAK90941; AAK90941; Atu6179.
GeneIDi1137502.
KEGGiatu:Atu6179.
PATRICi20820558. VBIAgrTum91616_5373.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00535 Genomic DNA. Translation: CAA68596.1.
M16397 Genomic DNA. Translation: AAA98387.1.
J03320 Genomic DNA. No translation available.
AE007871 Genomic DNA. Translation: AAK90941.2.
PIRiAI3249.
B25975.
RefSeqiNP_396500.2. NC_003065.3.
WP_010891491.1. NC_003065.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2RH3X-ray1.70A82-202[»]
ProteinModelPortaliP07166.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP07166. 2 interactions.
MINTiMINT-4794307.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK90941; AAK90941; Atu6179.
GeneIDi1137502.
KEGGiatu:Atu6179.
PATRICi20820558. VBIAgrTum91616_5373.

Phylogenomic databases

HOGENOMiHOG000091438.
OrthoDBiEOG6T4S24.

Enzyme and pathway databases

BioCyciAGRO:ATU6179-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP07166.

Family and domain databases

InterProiIPR010985. Ribbon_hlx_hlx.
IPR009841. VirC2.
[Graphical view]
PfamiPF07181. VirC2. 1 hit.
[Graphical view]
PIRSFiPIRSF016094. VirC2. 1 hit.
ProDomiPD022944. VirC2. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF47598. SSF47598. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular characterization of the virC genes of the Ti plasmid."
    Close T.J., Tait R.C., Rempel H.C., Hirooka T., Kim L., Kado C.I.
    J. Bacteriol. 169:2336-2344(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular characterization of the vir regulon of Agrobacterium tumefaciens: complete nucleotide sequence and gene organization of the 28.63-kbp regulon cloned as a single unit."
    Rogowsky P.M., Powell B.S., Shirasu K., Lin T.-S., Morel P., Zyprian E.M., Steck T.R., Kado C.I.
    Plasmid 23:85-106(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C58 / ATCC 33970.

Entry informationi

Entry nameiVIRC2_AGRFC
AccessioniPrimary (citable) accession number: P07166
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: April 1, 1988
Last modified: November 11, 2015
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The Ti plasmid contains at least six transcriptional units, designated vir loci, which are essential for efficient crown-gall tumorigenesis.

Keywords - Technical termi

3D-structure, Complete proteome, Plasmid, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.