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P07098

- LIPG_HUMAN

UniProt

P07098 - LIPG_HUMAN

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Protein

Gastric triacylglycerol lipase

Gene
LIPF
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Triacylglycerol + H2O = diacylglycerol + a carboxylate.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei172 – 1721Nucleophile
Active sitei343 – 3431Charge relay system
Active sitei372 – 3721Charge relay system

GO - Molecular functioni

  1. lipid binding Source: UniProtKB
  2. malate dehydrogenase activity Source: Ensembl
  3. triglyceride lipase activity Source: UniProtKB

GO - Biological processi

  1. lipid catabolic process Source: UniProtKB-KW
  2. malate metabolic process Source: Ensembl
  3. triglyceride metabolic process Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Lipid degradation, Lipid metabolism

Names & Taxonomyi

Protein namesi
Recommended name:
Gastric triacylglycerol lipase (EC:3.1.1.3)
Short name:
GL
Short name:
Gastric lipase
Gene namesi
Name:LIPF
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 10

Organism-specific databases

HGNCiHGNC:6622. LIPF.

Subcellular locationi

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-SubCell
  2. mitochondrion Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Secreted

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30394.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 19191 PublicationAdd
BLAST
Chaini20 – 398379Gastric triacylglycerol lipasePRO_0000017766Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi34 – 341N-linked (GlcNAc...)
Glycosylationi99 – 991N-linked (GlcNAc...)
Disulfide bondi246 ↔ 255
Glycosylationi271 – 2711N-linked (GlcNAc...)
Glycosylationi327 – 3271N-linked (GlcNAc...)

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP07098.
PRIDEiP07098.

PTM databases

PhosphoSiteiP07098.

Miscellaneous databases

PMAP-CutDBP07098.

Expressioni

Gene expression databases

ArrayExpressiP07098.
BgeeiP07098.
CleanExiHS_LIPF.
GenevestigatoriP07098.

Organism-specific databases

HPAiHPA045930.

Interactioni

Protein-protein interaction databases

BioGridi114085. 2 interactions.
IntActiP07098. 1 interaction.
STRINGi9606.ENSP00000238983.

Structurei

Secondary structure

1
398
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi29 – 324
Helixi35 – 417
Beta strandi47 – 526
Beta strandi56 – 649
Beta strandi79 – 835
Helixi90 – 945
Helixi102 – 1087
Beta strandi112 – 1154
Beta strandi127 – 1304
Helixi136 – 1383
Helixi142 – 1476
Helixi149 – 16113
Beta strandi166 – 1716
Helixi173 – 18412
Helixi186 – 1894
Beta strandi192 – 1998
Helixi210 – 2167
Helixi219 – 2268
Beta strandi228 – 2303
Turni234 – 2396
Helixi241 – 2499
Helixi252 – 2554
Helixi258 – 2636
Helixi272 – 2743
Helixi275 – 2795
Helixi288 – 30013
Helixi311 – 3188
Beta strandi319 – 3224
Helixi328 – 3303
Beta strandi335 – 3406
Beta strandi344 – 3463
Helixi348 – 35710
Beta strandi361 – 3677
Helixi374 – 3774
Helixi381 – 3844
Helixi386 – 3938
Turni394 – 3974

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1HLGX-ray3.00A/B28-398[»]
ProteinModelPortaliP07098.
SMRiP07098. Positions 28-398.

Miscellaneous databases

EvolutionaryTraceiP07098.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0596.
HOGENOMiHOG000240694.
HOVERGENiHBG006265.
InParanoidiP07098.
KOiK14452.
OMAiWARRNLY.
OrthoDBiEOG71RXJN.
PhylomeDBiP07098.
TreeFamiTF315485.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR000073. AB_hydrolase_1.
IPR006693. AB_hydrolase_lipase.
IPR025483. Lipase_euk.
[Graphical view]
PfamiPF04083. Abhydro_lipase. 1 hit.
PF00561. Abhydrolase_1. 1 hit.
[Graphical view]
PIRSFiPIRSF000862. Steryl_ester_lip. 1 hit.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00120. LIPASE_SER. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: P07098-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MWLLLTMASL ISVLGTTHGL FGKLHPGSPE VTMNISQMIT YWGYPNEEYE    50
VVTEDGYILE VNRIPYGKKN SGNTGQRPVV FLQHGLLASA TNWISNLPNN 100
SLAFILADAG YDVWLGNSRG NTWARRNLYY SPDSVEFWAF SFDEMAKYDL 150
PATIDFIVKK TGQKQLHYVG HSQGTTIGFI AFSTNPSLAK RIKTFYALAP 200
VATVKYTKSL INKLRFVPQS LFKFIFGDKI FYPHNFFDQF LATEVCSREM 250
LNLLCSNALF IICGFDSKNF NTSRLDVYLS HNPAGTSVQN MFHWTQAVKS 300
GKFQAYDWGS PVQNRMHYDQ SQPPYYNVTA MNVPIAVWNG GKDLLADPQD 350
VGLLLPKLPN LIYHKEIPFY NHLDFIWAMD APQEVYNDIV SMISEDKK 398
Length:398
Mass (Da):45,238
Last modified:April 1, 1988 - v1
Checksum:iCD3EE1621C014F0F
GO
Isoform 2 (identifier: P07098-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     75-107: Missing.

Note: No experimental confirmation available.

Show »
Length:365
Mass (Da):41,693
Checksum:i31199D27DA2A3863
GO
Isoform 3 (identifier: P07098-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MFSNANSRSKM

Note: No experimental confirmation available.

Show »
Length:408
Mass (Da):46,361
Checksum:i96E2AFF12E20DF86
GO
Isoform 4 (identifier: P07098-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MFSNANSRSKM
     75-107: Missing.

Note: No experimental confirmation available.

Show »
Length:375
Mass (Da):42,816
Checksum:i17FA3CD30823DDCF
GO

Sequence cautioni

The sequence CAA29414.1 differs from that shown. Reason: Erroneous initiation.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti161 – 1611T → A.2 Publications
Corresponds to variant rs814628 [ dbSNP | Ensembl ].
VAR_011947
Natural varianti224 – 2241F → I.1 Publication
Corresponds to variant rs6586145 [ dbSNP | Ensembl ].
VAR_020565
Natural varianti348 – 3481P → T.1 Publication
Corresponds to variant rs17333991 [ dbSNP | Ensembl ].
VAR_020566

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 11M → MFSNANSRSKM in isoform 3 and isoform 4. VSP_047295
Alternative sequencei75 – 10733Missing in isoform 2 and isoform 4. VSP_047296Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti350 – 3501D → N in BAH13459. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X05997 mRNA. Translation: CAA29413.1.
X05997 mRNA. Translation: CAA29414.1. Different initiation.
AK301310 mRNA. Translation: BAH13457.1.
AK301320 mRNA. Translation: BAH13459.1.
AK312940 mRNA. Translation: BAG35782.1.
AL833751 mRNA. Translation: CAH56244.1.
AY631869 Genomic DNA. Translation: AAT38115.1.
AL358532 Genomic DNA. Translation: CAH71057.1.
CH471066 Genomic DNA. Translation: EAW50162.1.
BC112272 mRNA. Translation: AAI12273.1.
BC113711 mRNA. Translation: AAI13712.1.
CCDSiCCDS55718.1. [P07098-3]
CCDS55719.1. [P07098-2]
CCDS65896.1. [P07098-4]
CCDS7389.1. [P07098-1]
PIRiS07145.
RefSeqiNP_001185757.1. NM_001198828.1. [P07098-2]
NP_001185758.1. NM_001198829.1. [P07098-3]
NP_001185759.1. NM_001198830.1. [P07098-4]
NP_004181.1. NM_004190.3. [P07098-1]
UniGeneiHs.523130.

Genome annotation databases

EnsembliENST00000238983; ENSP00000238983; ENSG00000182333. [P07098-1]
ENST00000394375; ENSP00000377900; ENSG00000182333. [P07098-3]
ENST00000608620; ENSP00000477140; ENSG00000182333. [P07098-2]
GeneIDi8513.
KEGGihsa:8513.
UCSCiuc001kfg.2. human. [P07098-1]

Polymorphism databases

DMDMi126306.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Web resourcesi

NIEHS-SNPs

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X05997 mRNA. Translation: CAA29413.1 .
X05997 mRNA. Translation: CAA29414.1 . Different initiation.
AK301310 mRNA. Translation: BAH13457.1 .
AK301320 mRNA. Translation: BAH13459.1 .
AK312940 mRNA. Translation: BAG35782.1 .
AL833751 mRNA. Translation: CAH56244.1 .
AY631869 Genomic DNA. Translation: AAT38115.1 .
AL358532 Genomic DNA. Translation: CAH71057.1 .
CH471066 Genomic DNA. Translation: EAW50162.1 .
BC112272 mRNA. Translation: AAI12273.1 .
BC113711 mRNA. Translation: AAI13712.1 .
CCDSi CCDS55718.1. [P07098-3 ]
CCDS55719.1. [P07098-2 ]
CCDS65896.1. [P07098-4 ]
CCDS7389.1. [P07098-1 ]
PIRi S07145.
RefSeqi NP_001185757.1. NM_001198828.1. [P07098-2 ]
NP_001185758.1. NM_001198829.1. [P07098-3 ]
NP_001185759.1. NM_001198830.1. [P07098-4 ]
NP_004181.1. NM_004190.3. [P07098-1 ]
UniGenei Hs.523130.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1HLG X-ray 3.00 A/B 28-398 [» ]
ProteinModelPortali P07098.
SMRi P07098. Positions 28-398.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 114085. 2 interactions.
IntActi P07098. 1 interaction.
STRINGi 9606.ENSP00000238983.

Chemistry

ChEMBLi CHEMBL1796.

PTM databases

PhosphoSitei P07098.

Polymorphism databases

DMDMi 126306.

Proteomic databases

PaxDbi P07098.
PRIDEi P07098.

Protocols and materials databases

DNASUi 8513.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000238983 ; ENSP00000238983 ; ENSG00000182333 . [P07098-1 ]
ENST00000394375 ; ENSP00000377900 ; ENSG00000182333 . [P07098-3 ]
ENST00000608620 ; ENSP00000477140 ; ENSG00000182333 . [P07098-2 ]
GeneIDi 8513.
KEGGi hsa:8513.
UCSCi uc001kfg.2. human. [P07098-1 ]

Organism-specific databases

CTDi 8513.
GeneCardsi GC10P090415.
HGNCi HGNC:6622. LIPF.
HPAi HPA045930.
MIMi 601980. gene.
neXtProti NX_P07098.
PharmGKBi PA30394.
GenAtlasi Search...

Phylogenomic databases

eggNOGi COG0596.
HOGENOMi HOG000240694.
HOVERGENi HBG006265.
InParanoidi P07098.
KOi K14452.
OMAi WARRNLY.
OrthoDBi EOG71RXJN.
PhylomeDBi P07098.
TreeFami TF315485.

Miscellaneous databases

ChiTaRSi LIPF. human.
EvolutionaryTracei P07098.
GenomeRNAii 8513.
NextBioi 31864.
PMAP-CutDB P07098.
PROi P07098.
SOURCEi Search...

Gene expression databases

ArrayExpressi P07098.
Bgeei P07098.
CleanExi HS_LIPF.
Genevestigatori P07098.

Family and domain databases

Gene3Di 3.40.50.1820. 1 hit.
InterProi IPR029058. AB_hydrolase.
IPR000073. AB_hydrolase_1.
IPR006693. AB_hydrolase_lipase.
IPR025483. Lipase_euk.
[Graphical view ]
Pfami PF04083. Abhydro_lipase. 1 hit.
PF00561. Abhydrolase_1. 1 hit.
[Graphical view ]
PIRSFi PIRSF000862. Steryl_ester_lip. 1 hit.
SUPFAMi SSF53474. SSF53474. 1 hit.
PROSITEi PS00120. LIPASE_SER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of a human gastric lipase and expression of the enzyme in yeast."
    Bodmer M.W., Angal S., Yarranton G.T., Harris T.J.R., Lyons A., King D.J., Pieroni G., Riviere C., Verger R., Lowe P.A.
    Biochim. Biophys. Acta 909:237-244(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
    Tissue: Stomach.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
    Tissue: Stomach.
  4. NIEHS SNPs program
    Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS ALA-161; ILE-224 AND THR-348.
  5. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT ALA-161.
  8. "Human gastric lipase. The N-terminal tetrapeptide is essential for lipid binding and lipase activity."
    Bernbaeck S., Blaeckberg L.
    Eur. J. Biochem. 182:495-499(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 20-45.
  9. "Crystal structure of human gastric lipase and model of lysosomal acid lipase, two lipolytic enzymes of medical interest."
    Roussel A., Canaan S., Egloff M.P., Riviere M., Dupuis L., Verger R., Cambillau C.
    J. Biol. Chem. 274:16995-17002(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS).

Entry informationi

Entry nameiLIPG_HUMAN
AccessioniPrimary (citable) accession number: P07098
Secondary accession number(s): B7Z723
, F5H1P4, Q2M1P6, Q5VXI7, Q5VXI8, Q658L8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: April 1, 1988
Last modified: September 3, 2014
This is version 154 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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