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Protein

Major capsid protein L1

Gene

L1

Organism
Human papillomavirus type 5
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processHost-virus interaction, Viral attachment to host cell, Viral penetration into host cytoplasm, Virus endocytosis by host, Virus entry into host cell

Names & Taxonomyi

Protein namesi
Recommended name:
Major capsid protein L1UniRule annotation
Gene namesi
Name:L1UniRule annotation
OrganismiHuman papillomavirus type 5
Taxonomic identifieri333923 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePapillomaviridaeBetapapillomavirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000009252 Componenti: Genome

Subcellular locationi

  • Virion UniRule annotation
  • Host nucleus UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Host nucleus, T=7 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001334871 – 516Major capsid protein L1Add BLAST516

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi175Interchain (with C-444)UniRule annotation
Disulfide bondi444Interchain (with C-175)UniRule annotation

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiP06917.

Expressioni

Keywords - Developmental stagei

Late protein

Interactioni

Subunit structurei

Self-assembles into homopentamers. The capsid has an icosahedral symmetry and consists of 72 capsomers, with each capsomer being a pentamer of L1. Interacts with the minor capsid protein L2; this interaction is necessary for viral genome encapsidation. Interacts with protein E2; this interaction enhances E2-dependent replication and transcription activation.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP06917.
SMRiP06917.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the papillomaviridae L1 protein family.UniRule annotation

Phylogenomic databases

KOiK19260.
OrthoDBiVOG0900007S.

Family and domain databases

Gene3Di2.60.175.20. 1 hit.
HAMAPiMF_04002. PPV_L1. 1 hit.
InterProiView protein in InterPro
IPR002210. Capsid_L1_Papillomavir.
IPR036973. Capsid_L1_sf_Papillomavir.
IPR011222. dsDNA_vir_gr_I_capsid.
PfamiView protein in Pfam
PF00500. Late_protein_L1. 1 hit.
PRINTSiPR00865. HPVCAPSIDL1.
SUPFAMiSSF88648. SSF88648. 1 hit.

Sequencei

Sequence statusi: Complete.

P06917-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVWHSANGK VYLPPSTPVA RVQSTDEYIQ RTNIYYHAFS DRLLTVGHPY
60 70 80 90 100
FNVYNINGDK LEVPKVSGNQ HRVFRLKLPD PNRFALPDMS VYNPDKERLV
110 120 130 140 150
WACRGLEIGR GQPLGVRSTG HPYFNKVKDT ENSNAYITFS KDDRQDTSFD
160 170 180 190 200
PKQIQMFIVG CTPCIGEHWD KAVPCAENDQ QTGLCPPIEL KNTYIQDGDM
210 220 230 240 250
ADIGFGNMNF KALQDSRSDV SLDIVNETCK YPDFLKMQND IYGDACFFYA
260 270 280 290 300
RREQCYARHF FVRGGKTGDD IPRAQIDNGT YKNQFYIPGA DGQAQKTIGN
310 320 330 340 350
SMYFPTVSGS LVSSDAQLFN RPFWLQRAQG HNNGILWANQ MFITVVDNTR
360 370 380 390 400
NTNFSISVYN QAGALKDVAD YNADQFREYQ RHVEEYEISL ILQLCKVPLK
410 420 430 440 450
AQVLAQINAM NSSLLEDWQL GFVPTPDNPI QDTYRYIDSL ATRCPDKNPP
460 470 480 490 500
KEKEDPYKGL HFWDVDLTER LSLDLDQYSL GRKFLFQAGL QQTTVNGTKA
510
VSYKGSNRGT KRKRKN
Length:516
Mass (Da):58,873
Last modified:February 1, 1996 - v2
Checksum:i071088159902CFA1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M17463 Genomic DNA. Translation: AAA46990.1.
PIRiA26277. P1WL5.
RefSeqiNP_041372.1. NC_001531.1.

Genome annotation databases

GeneIDi1489054.
KEGGivg:1489054.

Similar proteinsi

Entry informationi

Entry nameiVL1_HPV05
AccessioniPrimary (citable) accession number: P06917
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 1, 1988
Last sequence update: February 1, 1996
Last modified: October 25, 2017
This is version 87 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families