P06804 (TNFA_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 147.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Tumor necrosis factor Alternative name(s): Cachectin TNF-alpha Tumor necrosis factor ligand superfamily member 2 Short name=TNF-a Cleaved into the following 6 chains:
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| Gene names |
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| Organism | Mus musculus (Mouse) [Reference proteome] | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 235 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. It is mainly secreted by macrophages and can induce cell death of certain tumor cell lines. It is potent pyrogen causing fever by direct action or by stimulation of interleukin-1 secretion and is implicated in the induction of cachexia, Under certain conditions it can stimulate cell proliferation and induce cell differentiation. The TNF intracellular domain (ICD) form induces IL12 production in dendritic cells By similarity. |
| Subunit structure | Interacts with SPPL2B By similarity. Homotrimer. |
| Subcellular location | Cell membrane; Single-pass type II membrane protein. Tumor necrosis factor, membrane form: Membrane; Single-pass type II membrane protein By similarity. Tumor necrosis factor, soluble form: Secreted. C-domain 1: Secreted By similarity. C-domain 2: Secreted By similarity. |
| Post-translational modification | The membrane-bound form is further proteolytically processed by SPPL2A or SPPL2B through regulated intramembrane proteolysis producing TNF intracellular domains (ICD1 and ICD2) released in the cytosol and TNF C-domain 1 and C-domain 2 secreted into the extracellular space By similarity. The soluble form derives from the membrane form by proteolytic processing. The membrane form, but not the soluble form, is phosphorylated on serine residues. Dephosphorylation of the membrane form occurs by binding to soluble TNFRSF1A/TNFR1 By similarity. O-glycosylated; glycans contain galactose, N-acetylgalactosamine and N-acetylneuraminic acid By similarity. |
| Sequence similarities | Belongs to the tumor necrosis factor family. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 235 | 235 | Tumor necrosis factor, membrane form | PRO_0000034435 | |||||||||||||||||||||||||||||||||
| Chain | 1 – 39 | 39 | Intracellular domain 1 By similarity | PRO_0000417255 | |||||||||||||||||||||||||||||||||
| Chain | 1 – 35 | 35 | Intracellular domain 2 By similarity | PRO_0000417256 | |||||||||||||||||||||||||||||||||
| Chain | 50 – ? | C-domain 1 By similarity | PRO_0000417257 | ||||||||||||||||||||||||||||||||||
| Chain | 52 – ? | C-domain 2 By similarity | PRO_0000417258 | ||||||||||||||||||||||||||||||||||
| Chain | 80 – 235 | 156 | Tumor necrosis factor, soluble form | PRO_0000034436 | |||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||
| Topological domain | 1 – 35 | 35 | Cytoplasmic Potential | ||||||||||||||||||||||||||||||||||
| Transmembrane | 36 – 56 | 21 | Helical; Signal-anchor for type II membrane protein; Potential | ||||||||||||||||||||||||||||||||||
| Topological domain | 57 – 235 | 179 | Extracellular Potential | ||||||||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||||||||
| Site | 34 – 35 | 2 | Cleavage; by SPPL2A or SPPL2B By similarity | ||||||||||||||||||||||||||||||||||
| Site | 39 – 40 | 2 | Cleavage; by SPPL2A or SPPL2B By similarity | ||||||||||||||||||||||||||||||||||
| Site | 49 – 50 | 2 | Cleavage; by SPPL2A or SPPL2B By similarity | ||||||||||||||||||||||||||||||||||
| Site | 51 – 52 | 2 | Cleavage; by SPPL2A or SPPL2B By similarity | ||||||||||||||||||||||||||||||||||
| Site | 79 – 80 | 2 | Cleavage; by ADAM17 By similarity | ||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||
| Modified residue | 2 | 1 | Phosphoserine; by CK1 By similarity | ||||||||||||||||||||||||||||||||||
| Lipidation | 20 | 1 | N6-myristoyl lysine By similarity | ||||||||||||||||||||||||||||||||||
| Glycosylation | 83 | 1 | O-linked (GalNAc...); in soluble form By similarity | ||||||||||||||||||||||||||||||||||
| Glycosylation | 86 | 1 | N-linked (GlcNAc...) | ||||||||||||||||||||||||||||||||||
| Disulfide bond | 148 ↔ 179 | ||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||
| Natural variant | 7 | 1 | I → T in strain: BALB/c and C57BL/6. Ref.8 | ||||||||||||||||||||||||||||||||||
| Natural variant | 77 | 1 | T → A in strain: BALB/c and C57BL/6. Ref.8 | ||||||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||||
| Sequence conflict | 79 – 81 | 3 | Missing in AAB65593. Ref.8 | ||||||||||||||||||||||||||||||||||
| Sequence conflict | 231 | 1 | G → R Ref.3 | ||||||||||||||||||||||||||||||||||
| Sequence conflict | 231 | 1 | G → R Ref.4 | ||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||
| Beta strand | 92 – 97 | 6 | |||||||||||||||||||||||||||||||||||
| Beta strand | 99 – 101 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 107 – 109 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 115 – 117 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 121 – 123 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 126 – 128 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 130 – 147 | 18 | |||||||||||||||||||||||||||||||||||
| Beta strand | 154 – 161 | 8 | |||||||||||||||||||||||||||||||||||
| Turn | 163 – 165 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 168 – 176 | 9 | |||||||||||||||||||||||||||||||||||
| Beta strand | 191 – 204 | 14 | |||||||||||||||||||||||||||||||||||
| Beta strand | 209 – 215 | 7 | |||||||||||||||||||||||||||||||||||
| Helix | 217 – 219 | 3 | |||||||||||||||||||||||||||||||||||
| Beta strand | 227 – 234 | 8 | |||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and expression in Escherichia coli of the gene for mouse tumor necrosis factor." Shirai T., Shimizu N., Shiojiri S., Horiguchi S., Ito H. DNA 7:193-201(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [2] | "Cloning and expression in Escherichia coli of the cDNA for murine tumor necrosis factor." Pennica D., Hayflick J.S., Bringman T.S., Palladino M.A., Goeddel D.V. Proc. Natl. Acad. Sci. U.S.A. 82:6060-6064(1985) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [3] | "Identification of a common nucleotide sequence in the 3'-untranslated region of mRNA molecules specifying inflammatory mediators." Caput D., Beutler B., Hartog K., Thayer R., Brown-Shimer S., Cerami A. Proc. Natl. Acad. Sci. U.S.A. 83:1670-1674(1986) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [4] | "Molecular cloning of mouse tumour necrosis factor cDNA and its eukaryotic expression." Fransen L., Mueller R., Marmenout A., Tavernier J., van der Heyden J., Kawashima E., Chollet A., Tizard R., van Heuverswyn H., van Vliet A., Ruysschaert M.-R., Fiers W. Nucleic Acids Res. 13:4417-4429(1985) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [5] | "Molecular cloning of genes coding for tumor necrosis factor. Complete nucleotide sequence of the genome copy of TNF-alpha in mice." Shakhov A.N., Nedospasov S.A. Bioorg. Khim. 13:701-705(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. |
| [6] | "Nucleotide sequence of the murine TNF locus, including the TNF-alpha (tumor necrosis factor) and TNF-beta (lymphotoxin) genes." Semon D., Kawashima E., Jongeneel C.V., Shakhov A.N., Nedospasov S.A. Nucleic Acids Res. 15:9083-9084(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [7] | "Identification of a new susceptibility locus for insulin-dependent diabetes mellitus by ancestral haplotype congenic mapping." Ikegami H., Makino S., Yamato E., Kawaguchi Y., Ueda H., Sakamoto T., Takekawa K., Ogihara T. J. Clin. Invest. 96:1936-1942(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: CTS and NOD. |
| [8] | "Cloning and sequencing of the Tnfa genes of three inbred mouse strains." Iraqi F., Teale A. Immunogenetics 45:459-461(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS THR-7 AND ALA-77. Strain: A/J, BALB/c and C57BL/6. |
| [9] | "Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse." Xie T., Rowen L., Aguado B., Ahearn M.E., Madan A., Qin S., Campbell R.D., Hood L. Genome Res. 13:2621-2636(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 129. |
| [10] | "Conspicuous differences among gene genealogies of 21 nuclear genes of five Mus musculus subspecies." Liu Y., Kitano T., Koide T., Shiroishi T., Moriwaki K., Saitou N. Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE OF 1-96. Strain: BFM/2Msf, BLG2/Msf, C57BL/10SnJ, CAST/Ei, HMI/Msf, MSM/Msf, NJL/Msf, pgn2 and SWN/Msf. |
| [11] | "Alternative cleavage of the cachectin/tumor necrosis factor propeptide results in a larger, inactive form of secreted protein." Cseh K., Beutler B. J. Biol. Chem. 264:16256-16260(1989) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 70-87. |
| [12] | "Characterization of high molecular weight glycosylated forms of murine tumor necrosis factor." Sherry B., Juc D.-M., Zentella A., Cerami A. Biochem. Biophys. Res. Commun. 173:1072-1078(1990) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 80-99. |
| [13] | "A novel form of TNF/cachectin is a cell surface cytotoxic transmembrane protein: ramifications for the complex physiology of TNF." Kriegler M., Perez X., Defay K., Albert I., Lu S.D. Cell 53:45-53(1988) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION OF MEMBRANE-BOUND FORM. |
| [14] | "The structure of mouse tumour-necrosis factor at 1.4 A resolution: towards modulation of its selectivity and trimerization." Baeyens K.J., De Bondt H.L., Raeymaekers A., Fiers W., De Ranter C.J. Acta Crystallogr. D 55:772-778(1999) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) OF 80-235. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M20155 Genomic DNA. Translation: AAA40462.1. Sequence problems. M11731 mRNA. Translation: AAA40458.1. M13049 mRNA. Translation: AAA40457.1. X02611 mRNA. Translation: CAA26457.1. M38296 Genomic DNA. Translation: AAA40459.1. Y00467 Genomic DNA. Translation: CAA68530.1. U06950 Unassigned DNA. Translation: AAA18594.1. D84196 Genomic DNA. Translation: BAA19512.1. D84199 Genomic DNA. Translation: BAA19513.1. U68414 Genomic DNA. Translation: AAB65593.1. AF109719 Genomic DNA. Translation: AAC82484.1. AB039224 Genomic DNA. Translation: BAB68748.1. Sequence problems. AB039225 Genomic DNA. Translation: BAB68749.1. Sequence problems. AB039226 Genomic DNA. Translation: BAB68750.1. Sequence problems. AB039227 Genomic DNA. Translation: BAB68751.1. Sequence problems. AB039228 Genomic DNA. Translation: BAB68752.1. Sequence problems. AB039229 Genomic DNA. Translation: BAB68753.1. Sequence problems. AB039230 Genomic DNA. Translation: BAB68754.1. Sequence problems. AB039231 Genomic DNA. Translation: BAB68755.1. Sequence problems. AB039232 Genomic DNA. Translation: BAB68756.1. Sequence problems. | ||||||||||||
| IPI | IPI00128861. | ||||||||||||
| PIR | QWMSN. A22908. | ||||||||||||
| RefSeq | NP_038721.1. NM_013693.2. | ||||||||||||
| UniGene | Mm.1293. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P06804. | ||||||||||||
| SMR | P06804. Positions 88-235. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | P06804. 1 interaction. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P06804. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P06804. | ||||||||||||
| PRIDE | P06804. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENSMUST00000025263; ENSMUSP00000025263; ENSMUSG00000024401. ENSMUST00000167924; ENSMUSP00000126122; ENSMUSG00000024401. | ||||||||||||
| GeneID | 21926. | ||||||||||||
| KEGG | mmu:21926. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 7124. | ||||||||||||
| MGI | MGI:104798. Tnf. | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG40413. | ||||||||||||
| GeneTree | ENSGT00530000062992. | ||||||||||||
| HOGENOM | HOG000048729. | ||||||||||||
| HOVERGEN | HBG012516. | ||||||||||||
| InParanoid | P06804. | ||||||||||||
| KO | K03156. | ||||||||||||
| OMA | WYEPIYL. | ||||||||||||
| OrthoDB | EOG4JWVFT. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P06804. | ||||||||||||
| Bgee | P06804. | ||||||||||||
| CleanEx | MM_TNF. | ||||||||||||
| Genevestigator | P06804. | ||||||||||||
| GermOnline | ENSMUSG00000024401. Mus musculus. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 2.60.120.40. 1 hit. | ||||||||||||
| InterPro | IPR006052. TNF. IPR006053. TNF_a/b/c. IPR002959. TNF_alpha. IPR021184. TNF_CS. IPR008983. Tumour_necrosis_fac-like_dom. [Graphical view] | ||||||||||||
| Pfam | PF00229. TNF. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR01234. TNECROSISFCT. PR01235. TNFALPHA. | ||||||||||||
| SMART | SM00207. TNF. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF49842. TNF_like. 1 hit. | ||||||||||||
| PROSITE | PS00251. TNF_1. 1 hit. PS50049. TNF_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChEMBL | CHEMBL4984. | ||||||||||||
| EvolutionaryTrace | P06804. | ||||||||||||
| NextBio | 301508. | ||||||||||||
| PMAP-CutDB | P06804. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | TNFA_MOUSE | ||||||||
| Accession | Primary (citable) accession number: P06804 Secondary accession number(s): O35853, Q62326, Q91VF3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
