Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

T-cell receptor gamma chain C region DFL12

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

Receptor

Names & Taxonomyi

Protein namesi
Recommended name:
T-cell receptor gamma chain C region DFL12
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei137 – 157HelicalSequence analysisAdd BLAST21
Topological domaini158 – 169CytoplasmicSequence analysisAdd BLAST12

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000184533‹1 – 169T-cell receptor gamma chain C region DFL12Add BLAST›169

Proteomic databases

PRIDEiP06334.

Interactioni

Protein-protein interaction databases

IntActiP06334. 1 interactor.

Structurei

Secondary structure

1169
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi21 – 27Combined sources7
Beta strandi30 – 41Combined sources12
Beta strandi45 – 49Combined sources5
Beta strandi65 – 67Combined sources3
Beta strandi70 – 79Combined sources10
Helixi81 – 83Combined sources3
Beta strandi88 – 93Combined sources6
Turni98 – 100Combined sources3
Beta strandi103 – 107Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1YPZX-ray3.40F/H1-112[»]
ProteinModelPortaliP06334.
SMRiP06334.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP06334.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 136C regionAdd BLAST136

Keywords - Domaini

Immunoglobulin domain, Transmembrane, Transmembrane helix

Phylogenomic databases

HOVERGENiHBG017900.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P06334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
PSDKRLDADI SPKPTIFLPS VAETNLHKTG TYLCILEKFF PDVIRVYWKD
60 70 80 90 100
KNGNTILDSQ EGDTLKTKGT YMKFSWLTVP ERSMGKEHRC IVKHENNKGG
110 120 130 140 150
ADQEIFFPSI KKVATTCWQD KNDVLQLQFM STSAYYTYLL LLLKSVIYLA
160
IISFSLLRRT SVCCNEKRS
Length:169
Mass (Da):19,426
Last modified:January 1, 1988 - v1
Checksum:i7667D3F6F689E2E2
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei11

Sequence databases

PIRiA02138. RWMSC2.
UniGeneiMm.364155.

Cross-referencesi

Sequence databases

PIRiA02138. RWMSC2.
UniGeneiMm.364155.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1YPZX-ray3.40F/H1-112[»]
ProteinModelPortaliP06334.
SMRiP06334.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP06334. 1 interactor.

Proteomic databases

PRIDEiP06334.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG017900.

Miscellaneous databases

EvolutionaryTraceiP06334.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTCC3_MOUSE
AccessioniPrimary (citable) accession number: P06334
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1988
Last sequence update: January 1, 1988
Last modified: November 2, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.