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Reviewed, UniProtKB/Swiss-Prot P06188 (ARAB_SALTY)

Last modified June 16, 2009. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Ribulokinase
    EC=2.7.1.16
Gene names
Name: araB
Ordered Locus Names: STM0103
OrganismSalmonella typhimurium [Complete proteome] [HAMAP]
Taxonomic identifier90371 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella

Protein attributes

Sequence length569 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacteria route): step 2/3. HAMAP MF_00520

Sequence similarities

Belongs to the ribulokinase family.

Ontologies

Keywords
   Biological processArabinose catabolism
Carbohydrate metabolism
   LigandATP-binding
Nucleotide-binding
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processL-arabinose catabolic process

Inferred from electronic annotation. Source: HAMAP

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

ribulokinase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 569568Ribulokinase HAMAP MF_00520
PRO_0000198364

Sequences

Sequence LengthMass (Da)Tools
P06188-1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: AD510072F244EC34

FASTA56961,752
        10         20         30         40         50         60 
MAIAIGLDFG SDSVRALAVD CATGDEIATS VEWYPRWQEG RYCDGPNNQF RHHPRDYMES 

        70         80         90        100        110        120 
MEAALKAVLA QLSAAQRANV VGIGVDSTGS TPAPIDADGN VLALRPEFAE NPNAMFVLWK 

       130        140        150        160        170        180 
DHTAVEEADE ITRLCHKPGK VDYSRYIGGI YSSEWFWAKI LHVTRQDSAV AQAAVSWIEL 

       190        200        210        220        230        240 
CDWVPALLSG TTRPQDIRRG RCSAGHKTLW HESWGGLPPA SFFDELDPCI NRHLRYPLFS 

       250        260        270        280        290        300 
ETFTADLPVG TLCAEWAQRL DLPESVVISG GAFDCHMGAV GAGAQPNTLV KVIGTSTCDI 

       310        320        330        340        350        360 
LIADKQSVGD RAVKGICGQV DGSVVPNFIG LEAGQSAFGD IYAWFSRVLS WPLEQLAAQH 

       370        380        390        400        410        420 
PELKPQINAS QKQLLPALTD AWAKNPSLDH LPVVLDWFNG RRTPNANQRL KGVITDLNLA 

       430        440        450        460        470        480 
TDAPALFGGL VASTAFGARA IQECFTDQGI AVNNVMALGG IARKNQVIMQ VCCDVLNRPL 

       490        500        510        520        530        540 
QIVASDQCCA LGAAIFAAVA AKVHADIPAA QQSMASAVER TLRPHPEQAQ RFEQLYRRYQ 

       550        560 
QWALSAEQHY LPTAAPAPTT PANQAILTH 

« Hide

References

« Hide 'large scale' references
[1]"The araBAD operon of Salmonella typhimurium LT2. I. Nucleotide sequence of araB and primary structure of its product, ribulokinase."
Lin H.-C., Lei S.-P., Wilcox G.
Gene 34:111-122(1985) [PubMed: 2989100] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2."
McClelland M., Sanderson K.E., Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E. expand/collapse author list , Ryan E., Sun H., Florea L., Miller W., Stoneking T., Nhan M., Waterston R., Wilson R.K.
Nature 413:852-856(2001) [PubMed: 11677609] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LT2 / SGSC1412 / ATCC 700720.

Cross-references

Sequence databases

M11047 Genomic DNA. Translation: AAA27023.1.
AE008698 Genomic DNA. Translation: AAL19067.1.
PIRA24984.
RefSeqNP_459108.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID1251621.
GenomeReviewsGene locus STM0103 in contig AE006468_GR.
KEGGstm:STM0103.
NMPDRfig|99287.1.peg.101.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMP06188.
OMAP06188. NGRRTPD.

Enzyme and pathway databases

BioCycSTYP99287:STM0103-MON.
BRENDA2.7.1.16. 2.

Family and domain databases

HAMAPMF_00520.
[Tree]
InterProIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. L_ribulokin.
[Graphical view]
PANTHERPTHR10196. FGGY_kin. 1 hit.
PfamPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR01234. L-ribulokinase. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAB_SALTY
AccessionPrimary (citable) accession number: P06188
Entry history
Integrated into UniProtKB/Swiss-Prot: January 1, 1988
Last sequence update: January 23, 2007
Last modified: June 16, 2009
This is version 61 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents