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Protein

40S ribosomal protein S21

Gene

Rps21

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S21
Gene namesi
Name:Rps21
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi621038. Rps21.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 838340S ribosomal protein S21PRO_0000194733Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine1 Publication
Modified residuei81 – 811N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP05765.
PRIDEiP05765.

PTM databases

iPTMnetiP05765.
PhosphoSiteiP05765.

Interactioni

Protein-protein interaction databases

BioGridi249647. 1 interaction.
IntActiP05765. 3 interactions.
MINTiMINT-4565057.
STRINGi10116.ENSRNOP00000008458.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S21e family.Curated

Phylogenomic databases

eggNOGiKOG3486. Eukaryota.
ENOG4112266. LUCA.
HOGENOMiHOG000183557.
HOVERGENiHBG005025.
InParanoidiP05765.
KOiK02971.
OMAiTRYAICG.
OrthoDBiEOG7HQNBQ.
PhylomeDBiP05765.
TreeFamiTF300167.

Family and domain databases

InterProiIPR001931. Ribosomal_S21e.
IPR018279. Ribosomal_S21e_CS.
[Graphical view]
PANTHERiPTHR10442. PTHR10442. 1 hit.
PfamiPF01249. Ribosomal_S21e. 1 hit.
[Graphical view]
PIRSFiPIRSF002148. Ribosomal_S21e. 1 hit.
ProDomiPD006584. Ribosomal_S21e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS00996. RIBOSOMAL_S21E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P05765-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQNDAGEFVD LYVPRKCSAS NRIIAAKDHA SIQMNVAEVD RSTGRFNGQF
60 70 80
KTYGICGAIR RMGESDDSIL RLAKADGIVS KNF
Length:83
Mass (Da):9,127
Last modified:November 1, 1988 - v1
Checksum:i6790A08AEF4D0DB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79059 mRNA. Translation: CAA55658.1.
BC058464 mRNA. Translation: AAH58464.1.
PIRiC23862. R3RT21.
RefSeqiNP_112373.1. NM_031111.1.
UniGeneiRn.4153.

Genome annotation databases

GeneIDi81775.
KEGGirno:81775.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79059 mRNA. Translation: CAA55658.1.
BC058464 mRNA. Translation: AAH58464.1.
PIRiC23862. R3RT21.
RefSeqiNP_112373.1. NM_031111.1.
UniGeneiRn.4153.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi249647. 1 interaction.
IntActiP05765. 3 interactions.
MINTiMINT-4565057.
STRINGi10116.ENSRNOP00000008458.

PTM databases

iPTMnetiP05765.
PhosphoSiteiP05765.

Proteomic databases

PaxDbiP05765.
PRIDEiP05765.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi81775.
KEGGirno:81775.

Organism-specific databases

CTDi6227.
RGDi621038. Rps21.

Phylogenomic databases

eggNOGiKOG3486. Eukaryota.
ENOG4112266. LUCA.
HOGENOMiHOG000183557.
HOVERGENiHBG005025.
InParanoidiP05765.
KOiK02971.
OMAiTRYAICG.
OrthoDBiEOG7HQNBQ.
PhylomeDBiP05765.
TreeFamiTF300167.

Miscellaneous databases

ChiTaRSiRps21. rat.
NextBioi615601.
PROiP05765.

Family and domain databases

InterProiIPR001931. Ribosomal_S21e.
IPR018279. Ribosomal_S21e_CS.
[Graphical view]
PANTHERiPTHR10442. PTHR10442. 1 hit.
PfamiPF01249. Ribosomal_S21e. 1 hit.
[Graphical view]
PIRSFiPIRSF002148. Ribosomal_S21e. 1 hit.
ProDomiPD006584. Ribosomal_S21e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS00996. RIBOSOMAL_S21E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Primary structures of ribosomal protein YS25 from Saccharomyces cerevisiae and its counterparts from Schizosaccharomyces pombe and rat liver."
    Itoh T., Otaka E., Matsui K.A.
    Biochemistry 24:7418-7423(1985) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE, ACETYLATION AT MET-1.
  2. "The primary structures of rat ribosomal proteins: the characterization of the cDNAs for S21 and L39, corrections in the sequences of L7 and L18a, and the identification of L33."
    Chan Y.-L., Olvera J., Wool I.G.
    Biochem. Biophys. Res. Commun. 213:1042-1050(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Sprague-Dawley.
    Tissue: Liver.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Pituitary.

Entry informationi

Entry nameiRS21_RAT
AccessioniPrimary (citable) accession number: P05765
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1988
Last sequence update: November 1, 1988
Last modified: May 11, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.