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P05747

- RL29_YEAST

UniProt

P05747 - RL29_YEAST

Protein

60S ribosomal protein L29

Gene

RPL29

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: SGD

    GO - Biological processi

    1. cytoplasmic translation Source: SGD

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciYEAST:G3O-30506-MONOMER.
    ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L29
    Alternative name(s):
    YL43
    Gene namesi
    Name:RPL29
    Synonyms:YL43
    Ordered Locus Names:YFR032C-A
    ORF Names:YFR032BW
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome VI

    Organism-specific databases

    SGDiS000006437. RPL29.

    Subcellular locationi

    Cytoplasm 1 Publication

    GO - Cellular componenti

    1. cytosolic large ribosomal subunit Source: SGD

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed2 Publications
    Chaini2 – 595860S ribosomal protein L29PRO_0000219141Add
    BLAST

    Proteomic databases

    MaxQBiP05747.
    PaxDbiP05747.
    PeptideAtlasiP05747.

    Expressioni

    Gene expression databases

    GenevestigatoriP05747.

    Interactioni

    Subunit structurei

    Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

    Protein-protein interaction databases

    BioGridi31189. 73 interactions.
    IntActiP05747. 1 interaction.
    MINTiMINT-2493087.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VW8electron microscopy6.10c1-59[»]
    1VWUelectron microscopy6.10c1-59[»]
    3IZSelectron microscopy-d1-59[»]
    3U5EX-ray3.00b1-59[»]
    3U5IX-ray3.00b1-59[»]
    4B6Aelectron microscopy8.10b1-59[»]
    4BYNelectron microscopy4.30b2-59[»]
    4BYUelectron microscopy6.60b2-59[»]
    4CUWelectron microscopy3.70b1-59[»]
    ProteinModelPortaliP05747.
    SMRiP05747. Positions 2-50.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L29e family.Curated

    Phylogenomic databases

    eggNOGiNOG249125.
    GeneTreeiENSGT00390000007084.
    HOGENOMiHOG000212220.
    KOiK02905.
    OMAiNHNQSRK.
    OrthoDBiEOG7BGJ0F.

    Family and domain databases

    InterProiIPR002673. Ribosomal_L29e.
    [Graphical view]
    PANTHERiPTHR12884. PTHR12884. 1 hit.
    PfamiPF01779. Ribosomal_L29e. 1 hit.
    [Graphical view]
    ProDomiPD010314. Ribosomal_L29e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P05747-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKSKNHTAH NQTRKAHRNG IKKPKTYKYP SLKGVDPKFR RNHKHALHGT   50
    AKALAAAKK 59
    Length:59
    Mass (Da):6,669
    Last modified:January 23, 2007 - v3
    Checksum:iACED5822295F53F7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D50617 Genomic DNA. No translation available.
    AY558472 Genomic DNA. Translation: AAS56798.1.
    EF123141 mRNA. Translation: ABM97485.1.
    BK006940 Genomic DNA. Translation: DAA12474.1.
    PIRiS71066.
    RefSeqiNP_116690.3. NM_001184311.3.

    Genome annotation databases

    EnsemblFungiiYFR032C-A; YFR032C-A; YFR032C-A.
    GeneIDi850592.
    KEGGisce:YFR032C-A.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D50617 Genomic DNA. No translation available.
    AY558472 Genomic DNA. Translation: AAS56798.1 .
    EF123141 mRNA. Translation: ABM97485.1 .
    BK006940 Genomic DNA. Translation: DAA12474.1 .
    PIRi S71066.
    RefSeqi NP_116690.3. NM_001184311.3.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VW8 electron microscopy 6.10 c 1-59 [» ]
    1VWU electron microscopy 6.10 c 1-59 [» ]
    3IZS electron microscopy - d 1-59 [» ]
    3U5E X-ray 3.00 b 1-59 [» ]
    3U5I X-ray 3.00 b 1-59 [» ]
    4B6A electron microscopy 8.10 b 1-59 [» ]
    4BYN electron microscopy 4.30 b 2-59 [» ]
    4BYU electron microscopy 6.60 b 2-59 [» ]
    4CUW electron microscopy 3.70 b 1-59 [» ]
    ProteinModelPortali P05747.
    SMRi P05747. Positions 2-50.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 31189. 73 interactions.
    IntActi P05747. 1 interaction.
    MINTi MINT-2493087.

    Proteomic databases

    MaxQBi P05747.
    PaxDbi P05747.
    PeptideAtlasi P05747.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YFR032C-A ; YFR032C-A ; YFR032C-A .
    GeneIDi 850592.
    KEGGi sce:YFR032C-A.

    Organism-specific databases

    SGDi S000006437. RPL29.

    Phylogenomic databases

    eggNOGi NOG249125.
    GeneTreei ENSGT00390000007084.
    HOGENOMi HOG000212220.
    KOi K02905.
    OMAi NHNQSRK.
    OrthoDBi EOG7BGJ0F.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-30506-MONOMER.
    Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Miscellaneous databases

    NextBioi 966443.
    PROi P05747.

    Gene expression databases

    Genevestigatori P05747.

    Family and domain databases

    InterProi IPR002673. Ribosomal_L29e.
    [Graphical view ]
    PANTHERi PTHR12884. PTHR12884. 1 hit.
    Pfami PF01779. Ribosomal_L29e. 1 hit.
    [Graphical view ]
    ProDomi PD010314. Ribosomal_L29e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. "High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing."
      Juneau K., Palm C., Miranda M., Davis R.W.
      Proc. Natl. Acad. Sci. U.S.A. 104:1522-1527(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-47.
      Strain: ATCC 201390 / BY4743.
    5. "Yeast ribosomal proteins. VIII. Isolation of two proteins and sequence characterization of twenty-four proteins from cytoplasmic ribosomes."
      Otaka E., Higo K., Itoh T.
      Mol. Gen. Genet. 195:544-546(1984) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-40, CLEAVAGE OF INITIATOR METHIONINE.
    6. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
      Planta R.J., Mager W.H.
      Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NOMENCLATURE, SUBUNIT.
    7. "The action of N-terminal acetyltransferases on yeast ribosomal proteins."
      Arnold R.J., Polevoda B., Reilly J.P., Sherman F.
      J. Biol. Chem. 274:37035-37040(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: CLEAVAGE OF INITIATOR METHIONINE.
    8. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    9. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    11. "Sites of ubiquitin attachment in Saccharomyces cerevisiae."
      Starita L.M., Lo R.S., Eng J.K., von Haller P.D., Fields S.
      Proteomics 12:236-240(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    12. "Crystal structure of the eukaryotic ribosome."
      Ben-Shem A., Jenner L., Yusupova G., Yusupov M.
      Science 330:1203-1209(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.0 ANGSTROMS) OF 80S RIBOSOME.
    13. Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 80S RIBOSOME.

    Entry informationi

    Entry nameiRL29_YEAST
    AccessioniPrimary (citable) accession number: P05747
    Secondary accession number(s): A2TBN8, D6VTR4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1988
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 118 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 51100 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families
    4. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    5. Yeast chromosome VI
      Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

    External Data

    Dasty 3