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P05747

- RL29_YEAST

UniProt

P05747 - RL29_YEAST

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Protein

60S ribosomal protein L29

Gene

RPL29

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: SGD

GO - Biological processi

  1. cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-30506-MONOMER.
ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.
REACT_232946. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_252688. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_257951. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L29
Alternative name(s):
YL43
Gene namesi
Name:RPL29
Synonyms:YL43
Ordered Locus Names:YFR032C-A
ORF Names:YFR032BW
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VI

Organism-specific databases

SGDiS000006437. RPL29.

Subcellular locationi

Cytoplasm 1 Publication

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 595860S ribosomal protein L29PRO_0000219141Add
BLAST

Proteomic databases

MaxQBiP05747.
PaxDbiP05747.
PeptideAtlasiP05747.

Expressioni

Gene expression databases

GenevestigatoriP05747.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi31189. 73 interactions.
IntActiP05747. 1 interaction.
MINTiMINT-2493087.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VW8electron microscopy6.10c1-59[»]
1VWUelectron microscopy6.10c1-59[»]
1VXVelectron microscopy6.20c1-59[»]
1VXYelectron microscopy6.30c1-59[»]
3IZSelectron microscopy-d1-59[»]
3U5EX-ray3.00b1-59[»]
3U5IX-ray3.00b1-59[»]
4B6Aelectron microscopy8.10b1-59[»]
4BYNelectron microscopy4.30b2-59[»]
4BYUelectron microscopy6.60b2-59[»]
4CUWelectron microscopy3.70b1-59[»]
ProteinModelPortaliP05747.
SMRiP05747. Positions 2-50.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29e family.Curated

Phylogenomic databases

eggNOGiNOG249125.
GeneTreeiENSGT00390000007084.
HOGENOMiHOG000212220.
InParanoidiP05747.
KOiK02905.
OMAiNHNQSRK.
OrthoDBiEOG7BGJ0F.

Family and domain databases

InterProiIPR002673. Ribosomal_L29e.
[Graphical view]
PANTHERiPTHR12884. PTHR12884. 1 hit.
PfamiPF01779. Ribosomal_L29e. 1 hit.
[Graphical view]
ProDomiPD010314. Ribosomal_L29e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P05747-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKSKNHTAH NQTRKAHRNG IKKPKTYKYP SLKGVDPKFR RNHKHALHGT

AKALAAAKK
Length:59
Mass (Da):6,669
Last modified:January 23, 2007 - v3
Checksum:iACED5822295F53F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. No translation available.
AY558472 Genomic DNA. Translation: AAS56798.1.
EF123141 mRNA. Translation: ABM97485.1.
BK006940 Genomic DNA. Translation: DAA12474.1.
PIRiS71066.
RefSeqiNP_116690.3. NM_001184311.3.

Genome annotation databases

EnsemblFungiiYFR032C-A; YFR032C-A; YFR032C-A.
GeneIDi850592.
KEGGisce:YFR032C-A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. No translation available.
AY558472 Genomic DNA. Translation: AAS56798.1 .
EF123141 mRNA. Translation: ABM97485.1 .
BK006940 Genomic DNA. Translation: DAA12474.1 .
PIRi S71066.
RefSeqi NP_116690.3. NM_001184311.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VW8 electron microscopy 6.10 c 1-59 [» ]
1VWU electron microscopy 6.10 c 1-59 [» ]
1VXV electron microscopy 6.20 c 1-59 [» ]
1VXY electron microscopy 6.30 c 1-59 [» ]
3IZS electron microscopy - d 1-59 [» ]
3U5E X-ray 3.00 b 1-59 [» ]
3U5I X-ray 3.00 b 1-59 [» ]
4B6A electron microscopy 8.10 b 1-59 [» ]
4BYN electron microscopy 4.30 b 2-59 [» ]
4BYU electron microscopy 6.60 b 2-59 [» ]
4CUW electron microscopy 3.70 b 1-59 [» ]
ProteinModelPortali P05747.
SMRi P05747. Positions 2-50.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 31189. 73 interactions.
IntActi P05747. 1 interaction.
MINTi MINT-2493087.

Proteomic databases

MaxQBi P05747.
PaxDbi P05747.
PeptideAtlasi P05747.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YFR032C-A ; YFR032C-A ; YFR032C-A .
GeneIDi 850592.
KEGGi sce:YFR032C-A.

Organism-specific databases

SGDi S000006437. RPL29.

Phylogenomic databases

eggNOGi NOG249125.
GeneTreei ENSGT00390000007084.
HOGENOMi HOG000212220.
InParanoidi P05747.
KOi K02905.
OMAi NHNQSRK.
OrthoDBi EOG7BGJ0F.

Enzyme and pathway databases

BioCyci YEAST:G3O-30506-MONOMER.
Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.
REACT_232946. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_252688. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_257951. Peptide chain elongation.

Miscellaneous databases

NextBioi 966443.
PROi P05747.

Gene expression databases

Genevestigatori P05747.

Family and domain databases

InterProi IPR002673. Ribosomal_L29e.
[Graphical view ]
PANTHERi PTHR12884. PTHR12884. 1 hit.
Pfami PF01779. Ribosomal_L29e. 1 hit.
[Graphical view ]
ProDomi PD010314. Ribosomal_L29e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. "High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing."
    Juneau K., Palm C., Miranda M., Davis R.W.
    Proc. Natl. Acad. Sci. U.S.A. 104:1522-1527(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-47.
    Strain: ATCC 201390 / BY4743.
  5. "Yeast ribosomal proteins. VIII. Isolation of two proteins and sequence characterization of twenty-four proteins from cytoplasmic ribosomes."
    Otaka E., Higo K., Itoh T.
    Mol. Gen. Genet. 195:544-546(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-40, CLEAVAGE OF INITIATOR METHIONINE.
  6. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  7. "The action of N-terminal acetyltransferases on yeast ribosomal proteins."
    Arnold R.J., Polevoda B., Reilly J.P., Sherman F.
    J. Biol. Chem. 274:37035-37040(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: CLEAVAGE OF INITIATOR METHIONINE.
  8. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  9. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  11. "Sites of ubiquitin attachment in Saccharomyces cerevisiae."
    Starita L.M., Lo R.S., Eng J.K., von Haller P.D., Fields S.
    Proteomics 12:236-240(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  12. "Crystal structure of the eukaryotic ribosome."
    Ben-Shem A., Jenner L., Yusupova G., Yusupov M.
    Science 330:1203-1209(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.0 ANGSTROMS) OF 80S RIBOSOME.
  13. Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 80S RIBOSOME.

Entry informationi

Entry nameiRL29_YEAST
AccessioniPrimary (citable) accession number: P05747
Secondary accession number(s): A2TBN8, D6VTR4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1988
Last sequence update: January 23, 2007
Last modified: November 26, 2014
This is version 120 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 51100 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome VI
    Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

External Data

Dasty 3