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Protein

60S ribosomal protein L29

Gene

RPL29

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-30506-MONOMER.
ReactomeiR-SCE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SCE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SCE-72689. Formation of a pool of free 40S subunits.
R-SCE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SCE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SCE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L29
Alternative name(s):
YL43
Gene namesi
Name:RPL29
Synonyms:YL43
Ordered Locus Names:YFR032C-A
ORF Names:YFR032BW
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VI

Organism-specific databases

EuPathDBiFungiDB:YFR032C-A.
SGDiS000006437. RPL29.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00002191412 – 5960S ribosomal protein L29Add BLAST58

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki52Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)Combined sources

Keywords - PTMi

Isopeptide bond, Ubl conjugation

Proteomic databases

MaxQBiP05747.
PRIDEiP05747.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi31189. 50 interactors.
IntActiP05747. 1 interactor.
MINTiMINT-2493087.

Structurei

Secondary structure

159
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi12 – 18Combined sources7
Helixi37 – 55Combined sources19
Helixi56 – 58Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J6Xelectron microscopy6.10691-59[»]
3J6Yelectron microscopy6.10691-59[»]
3J77electron microscopy6.20791-59[»]
3J78electron microscopy6.30791-59[»]
4U3MX-ray3.00N9/n92-59[»]
4U3NX-ray3.20N9/n92-59[»]
4U3UX-ray2.90N9/n92-59[»]
4U4NX-ray3.10N9/n92-59[»]
4U4OX-ray3.60N9/n92-59[»]
4U4QX-ray3.00N9/n92-59[»]
4U4RX-ray2.80N9/n92-59[»]
4U4UX-ray3.00N9/n92-59[»]
4U4YX-ray3.20N9/n92-59[»]
4U4ZX-ray3.10N9/n92-59[»]
4U50X-ray3.20N9/n92-59[»]
4U51X-ray3.20N9/n92-59[»]
4U52X-ray3.00N9/n92-59[»]
4U53X-ray3.30N9/n92-59[»]
4U55X-ray3.20N9/n92-59[»]
4U56X-ray3.45N9/n92-59[»]
4U6FX-ray3.10N9/n92-59[»]
4V6Ielectron microscopy8.80Bd1-59[»]
4V88X-ray3.00Bb/Db1-59[»]
4V8Telectron microscopy8.10b1-59[»]
4V8Yelectron microscopy4.30Bb2-59[»]
4V8Zelectron microscopy6.60Bb2-59[»]
4V91electron microscopy3.70b1-59[»]
5APNelectron microscopy3.91b1-59[»]
5APOelectron microscopy3.41b1-59[»]
5DATX-ray3.15N9/n92-59[»]
5DC3X-ray3.25N9/n92-59[»]
5FCIX-ray3.40N9/n92-59[»]
5FCJX-ray3.10N9/n92-59[»]
5GAKelectron microscopy3.88d1-59[»]
5I4LX-ray3.10N9/n92-59[»]
5JUOelectron microscopy4.00GA1-59[»]
5JUPelectron microscopy3.50GA1-59[»]
5JUSelectron microscopy4.20GA1-59[»]
5JUTelectron microscopy4.00GA1-59[»]
5JUUelectron microscopy4.00GA1-59[»]
ProteinModelPortaliP05747.
SMRiP05747.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29e family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000007084.
HOGENOMiHOG000212220.
InParanoidiP05747.
KOiK02905.
OMAiPTSHRTR.
OrthoDBiEOG092C5YBC.

Family and domain databases

InterProiIPR002673. Ribosomal_L29e.
[Graphical view]
PANTHERiPTHR12884. PTHR12884. 1 hit.
PfamiPF01779. Ribosomal_L29e. 1 hit.
[Graphical view]
ProDomiPD010314. Ribosomal_L29e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P05747-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKSKNHTAH NQTRKAHRNG IKKPKTYKYP SLKGVDPKFR RNHKHALHGT

AKALAAAKK
Length:59
Mass (Da):6,669
Last modified:January 23, 2007 - v3
Checksum:iACED5822295F53F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. No translation available.
AY558472 Genomic DNA. Translation: AAS56798.1.
EF123141 mRNA. Translation: ABM97485.1.
BK006940 Genomic DNA. Translation: DAA12474.1.
PIRiS71066.
RefSeqiNP_116690.3. NM_001184311.3.

Genome annotation databases

EnsemblFungiiYFR032C-A; YFR032C-A; YFR032C-A.
GeneIDi850592.
KEGGisce:YFR032C-A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. No translation available.
AY558472 Genomic DNA. Translation: AAS56798.1.
EF123141 mRNA. Translation: ABM97485.1.
BK006940 Genomic DNA. Translation: DAA12474.1.
PIRiS71066.
RefSeqiNP_116690.3. NM_001184311.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J6Xelectron microscopy6.10691-59[»]
3J6Yelectron microscopy6.10691-59[»]
3J77electron microscopy6.20791-59[»]
3J78electron microscopy6.30791-59[»]
4U3MX-ray3.00N9/n92-59[»]
4U3NX-ray3.20N9/n92-59[»]
4U3UX-ray2.90N9/n92-59[»]
4U4NX-ray3.10N9/n92-59[»]
4U4OX-ray3.60N9/n92-59[»]
4U4QX-ray3.00N9/n92-59[»]
4U4RX-ray2.80N9/n92-59[»]
4U4UX-ray3.00N9/n92-59[»]
4U4YX-ray3.20N9/n92-59[»]
4U4ZX-ray3.10N9/n92-59[»]
4U50X-ray3.20N9/n92-59[»]
4U51X-ray3.20N9/n92-59[»]
4U52X-ray3.00N9/n92-59[»]
4U53X-ray3.30N9/n92-59[»]
4U55X-ray3.20N9/n92-59[»]
4U56X-ray3.45N9/n92-59[»]
4U6FX-ray3.10N9/n92-59[»]
4V6Ielectron microscopy8.80Bd1-59[»]
4V88X-ray3.00Bb/Db1-59[»]
4V8Telectron microscopy8.10b1-59[»]
4V8Yelectron microscopy4.30Bb2-59[»]
4V8Zelectron microscopy6.60Bb2-59[»]
4V91electron microscopy3.70b1-59[»]
5APNelectron microscopy3.91b1-59[»]
5APOelectron microscopy3.41b1-59[»]
5DATX-ray3.15N9/n92-59[»]
5DC3X-ray3.25N9/n92-59[»]
5FCIX-ray3.40N9/n92-59[»]
5FCJX-ray3.10N9/n92-59[»]
5GAKelectron microscopy3.88d1-59[»]
5I4LX-ray3.10N9/n92-59[»]
5JUOelectron microscopy4.00GA1-59[»]
5JUPelectron microscopy3.50GA1-59[»]
5JUSelectron microscopy4.20GA1-59[»]
5JUTelectron microscopy4.00GA1-59[»]
5JUUelectron microscopy4.00GA1-59[»]
ProteinModelPortaliP05747.
SMRiP05747.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31189. 50 interactors.
IntActiP05747. 1 interactor.
MINTiMINT-2493087.

Proteomic databases

MaxQBiP05747.
PRIDEiP05747.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYFR032C-A; YFR032C-A; YFR032C-A.
GeneIDi850592.
KEGGisce:YFR032C-A.

Organism-specific databases

EuPathDBiFungiDB:YFR032C-A.
SGDiS000006437. RPL29.

Phylogenomic databases

GeneTreeiENSGT00390000007084.
HOGENOMiHOG000212220.
InParanoidiP05747.
KOiK02905.
OMAiPTSHRTR.
OrthoDBiEOG092C5YBC.

Enzyme and pathway databases

BioCyciYEAST:G3O-30506-MONOMER.
ReactomeiR-SCE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SCE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SCE-72689. Formation of a pool of free 40S subunits.
R-SCE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SCE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SCE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP05747.

Family and domain databases

InterProiIPR002673. Ribosomal_L29e.
[Graphical view]
PANTHERiPTHR12884. PTHR12884. 1 hit.
PfamiPF01779. Ribosomal_L29e. 1 hit.
[Graphical view]
ProDomiPD010314. Ribosomal_L29e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiRL29_YEAST
AccessioniPrimary (citable) accession number: P05747
Secondary accession number(s): A2TBN8, D6VTR4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1988
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 140 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 51100 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome VI
    Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.