Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P05738

- RL9A_YEAST

UniProt

P05738 - RL9A_YEAST

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

60S ribosomal protein L9-A

Gene

RPL9A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: SGD

GO - Biological processi

  1. cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-30641-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9-A
Alternative name(s):
L8
RP24
YL11
Gene namesi
Name:RPL9A
Synonyms:RPL8A, RPL9
Ordered Locus Names:YGL147C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VII

Organism-specific databases

CYGDiYGL147c.
SGDiS000003115. RPL9A.

Subcellular locationi

Cytoplasm 1 Publication

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19119160S ribosomal protein L9-APRO_0000131111Add
BLAST

Proteomic databases

MaxQBiP05738.
PeptideAtlasiP05738.

Expressioni

Gene expression databases

GenevestigatoriP05738.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi33105. 119 interactions.
DIPiDIP-4826N.
IntActiP05738. 9 interactions.
MINTiMINT-493534.
STRINGi4932.YGL147C.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K5Ymodel-H7-184[»]
1S1Ielectron microscopy11.70H1-191[»]
1VW8electron microscopy6.10I1-191[»]
1VWUelectron microscopy6.10I1-191[»]
1VXVelectron microscopy6.20I1-191[»]
1VXYelectron microscopy6.30I1-191[»]
3IZSelectron microscopy-F1-191[»]
3J16electron microscopy-F1-191[»]
3J65electron microscopy8.70F1-191[»]
3O58X-ray4.00I1-191[»]
3O5HX-ray4.00I1-191[»]
3U5EX-ray3.00H1-191[»]
3U5IX-ray3.00H1-191[»]
4B6Aelectron microscopy8.10H1-191[»]
4BYNelectron microscopy4.30H1-191[»]
4BYUelectron microscopy6.60H1-191[»]
4CUWelectron microscopy3.70H1-191[»]
ProteinModelPortaliP05738.
SMRiP05738. Positions 1-191.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP05738.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
InParanoidiP05738.
KOiK02940.
OMAiEFVGQTA.
OrthoDBiEOG7FR7TQ.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P05738-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKYIQTEQQI EVPEGVTVSI KSRIVKVVGP RGTLTKNLKH IDVTFTKVNN
60 70 80 90 100
QLIKVAVHNG GRKHVAALRT VKSLVDNMIT GVTKGYKYKM RYVYAHFPIN
110 120 130 140 150
VNIVEKDGAK FIEVRNFLGD KKIRNVPVRD GVTIEFSTNV KDEIVLSGNS
160 170 180 190
VEDVSQNAAD LQQICRVRNK DIRKFLDGIY VSHKGFITED L
Length:191
Mass (Da):21,569
Last modified:December 1, 1992 - v2
Checksum:iCAA342FCDD061175
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X60190 Genomic DNA. Translation: CAA42746.1.
X99960 Genomic DNA. Translation: CAA68215.1.
Z72669 Genomic DNA. Translation: CAA96859.1.
BK006941 Genomic DNA. Translation: DAA07963.1.
PIRiS19077. R5BYL9.
RefSeqiNP_011368.3. NM_001181012.3.

Genome annotation databases

EnsemblFungiiYGL147C; YGL147C; YGL147C.
GeneIDi852730.
KEGGisce:YGL147C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X60190 Genomic DNA. Translation: CAA42746.1 .
X99960 Genomic DNA. Translation: CAA68215.1 .
Z72669 Genomic DNA. Translation: CAA96859.1 .
BK006941 Genomic DNA. Translation: DAA07963.1 .
PIRi S19077. R5BYL9.
RefSeqi NP_011368.3. NM_001181012.3.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1K5Y model - H 7-184 [» ]
1S1I electron microscopy 11.70 H 1-191 [» ]
1VW8 electron microscopy 6.10 I 1-191 [» ]
1VWU electron microscopy 6.10 I 1-191 [» ]
1VXV electron microscopy 6.20 I 1-191 [» ]
1VXY electron microscopy 6.30 I 1-191 [» ]
3IZS electron microscopy - F 1-191 [» ]
3J16 electron microscopy - F 1-191 [» ]
3J65 electron microscopy 8.70 F 1-191 [» ]
3O58 X-ray 4.00 I 1-191 [» ]
3O5H X-ray 4.00 I 1-191 [» ]
3U5E X-ray 3.00 H 1-191 [» ]
3U5I X-ray 3.00 H 1-191 [» ]
4B6A electron microscopy 8.10 H 1-191 [» ]
4BYN electron microscopy 4.30 H 1-191 [» ]
4BYU electron microscopy 6.60 H 1-191 [» ]
4CUW electron microscopy 3.70 H 1-191 [» ]
ProteinModelPortali P05738.
SMRi P05738. Positions 1-191.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 33105. 119 interactions.
DIPi DIP-4826N.
IntActi P05738. 9 interactions.
MINTi MINT-493534.
STRINGi 4932.YGL147C.

Proteomic databases

MaxQBi P05738.
PeptideAtlasi P05738.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YGL147C ; YGL147C ; YGL147C .
GeneIDi 852730.
KEGGi sce:YGL147C.

Organism-specific databases

CYGDi YGL147c.
SGDi S000003115. RPL9A.

Phylogenomic databases

GeneTreei ENSGT00390000015224.
HOGENOMi HOG000039905.
InParanoidi P05738.
KOi K02940.
OMAi EFVGQTA.
OrthoDBi EOG7FR7TQ.

Enzyme and pathway databases

BioCyci YEAST:G3O-30641-MONOMER.

Miscellaneous databases

EvolutionaryTracei P05738.
NextBioi 972123.

Gene expression databases

Genevestigatori P05738.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMi SSF56053. SSF56053. 2 hits.
PROSITEi PS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterisation of a yeast homolog of the mammalian ribosomal protein L9."
    Jones D.G.L., Reusser U., Braus G.H.
    Nucleic Acids Res. 19:5785-5785(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The sequence of a nearly unclonable 22.8 kb segment on the left arm chromosome VII from Saccharomyces cerevisiae reveals ARO2, RPL9A, TIP1, MRF1 genes and six new open reading frames."
    Voet M., Defoor E., Verhasselt P., Riles L., Robben J., Volckaert G.
    Yeast 13:177-182(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
    Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E.
    , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
    Nature 387:81-84(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. "Yeast ribosomal proteins. VIII. Isolation of two proteins and sequence characterization of twenty-four proteins from cytoplasmic ribosomes."
    Otaka E., Higo K., Itoh T.
    Mol. Gen. Genet. 195:544-546(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: PARTIAL PROTEIN SEQUENCE OF 1-40.
  6. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  7. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  8. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  9. "Structure of the 80S ribosome from Saccharomyces cerevisiae -- tRNA-ribosome and subunit-subunit interactions."
    Spahn C.M.T., Beckmann R., Eswar N., Penczek P.A., Sali A., Blobel G., Frank J.
    Cell 107:373-386(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: 3D-STRUCTURE MODELING OF 7-184, ELECTRON MICROSCOPY.
  10. "Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation."
    Spahn C.M.T., Gomez-Lorenzo M.G., Grassucci R.A., Joergensen R., Andersen G.R., Beckmann R., Penczek P.A., Ballesta J.P.G., Frank J.
    EMBO J. 23:1008-1019(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: 3D-STRUCTURE MODELING, ELECTRON MICROSCOPY.
  11. "Crystal structure of the eukaryotic ribosome."
    Ben-Shem A., Jenner L., Yusupova G., Yusupov M.
    Science 330:1203-1209(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.0 ANGSTROMS) OF 80S RIBOSOME.
  12. Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 80S RIBOSOME.

Entry informationi

Entry nameiRL9A_YEAST
AccessioniPrimary (citable) accession number: P05738
Secondary accession number(s): D6VU02
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1988
Last sequence update: December 1, 1992
Last modified: October 29, 2014
This is version 136 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 52400 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for L9 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome VII
    Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

External Data

Dasty 3