P05166 (PCCB_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 134.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Propionyl-CoA carboxylase beta chain, mitochondrial Short name=PCCase subunit beta EC=6.4.1.3 Alternative name(s): Propanoyl-CoA:carbon dioxide ligase subunit beta | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 539 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Catalytic activity | ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA. |
| Pathway | |
| Subunit structure | Probably a dodecamer composed of six biotin-containing alpha subunits and six beta subunits. |
| Subcellular location | |
| Involvement in disease | Propionic acidemia type II (PA-2) [MIM:606054]: Life-threatening disease characterized by episodic vomiting, lethargy and ketosis, neutropenia, periodic thrombocytopenia, hypogammaglobulinemia, developmental retardation, and intolerance to protein. |
| Sequence similarities | Belongs to the AccD/PCCB family. Contains 1 carboxyltransferase domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Mitochondrion |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Disease mutation |
| Domain | Transit peptide |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Ligase |
| PTM | Acetylation |
| Technical term | Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | fatty acid beta-oxidation Traceable author statement. Source: Reactome short-chain fatty acid catabolic processTraceable author statement. Source: Reactome |
| Cellular_component | mitochondrial matrix Traceable author statement. Source: Reactome |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW propionyl-CoA carboxylase activityTraceable author statement Ref.1. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P05166-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P05166-2) The sequence of this isoform differs from the canonical sequence as follows: 124-124: Q → QQIIGWAQWLPLVISALWEAE | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – 28 | 28 | Mitochondrion Ref.9 | ||||||
| Chain | 29 – 539 | 511 | Propionyl-CoA carboxylase beta chain, mitochondrial | PRO_0000000293 | |||||
Regions | |||||||||
| Domain | 38 – 531 | 494 | Carboxyltransferase | ||||||
| Region | 325 – 358 | 34 | Acyl-CoA binding Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 60 | 1 | N6-acetyllysine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 124 | 1 | Q → QQIIGWAQWLPLVISALWEA E in isoform 2. | VSP_042568 | |||||
| Natural variant | 17 | 1 | L → M in PA-2. Ref.14 | VAR_009080 | |||||
| Natural variant | 44 | 1 | R → P in PA-2. | VAR_000271 | |||||
| Natural variant | 67 | 1 | R → S in PA-2. Ref.18 | VAR_023847 | |||||
| Natural variant | 106 | 1 | S → R in PA-2. | VAR_000272 | |||||
| Natural variant | 107 | 1 | V → M in PA-2. Ref.18 | VAR_023848 | |||||
| Natural variant | 112 | 1 | G → D in PA-2. Ref.18 | VAR_023849 | |||||
| Natural variant | 131 | 1 | G → R in PA-2. | VAR_000273 | |||||
| Natural variant | 140 | 1 | K → KICK in PA-2. | VAR_009081 | |||||
| Natural variant | 153 | 1 | A → P in PA-2. Ref.19 | VAR_023850 | |||||
| Natural variant | 165 | 1 | R → Q in PA-2; does not affect either heteromeric or homomeric assembly. Ref.16 Ref.18 | VAR_023851 | |||||
| Natural variant | 165 | 1 | R → W in PA-2. Ref.19 | VAR_000274 | |||||
| Natural variant | 168 | 1 | E → K in PA-2; common mutation. Ref.14 Ref.18 | VAR_000275 | |||||
| Natural variant | 188 | 1 | G → R in PA-2. Ref.18 | VAR_023852 | |||||
| Natural variant | 198 | 1 | G → D in PA-2. | VAR_000276 | |||||
| Natural variant | 205 | 1 | V → D in PA-2. Ref.14 | VAR_009082 | |||||
| Natural variant | 228 | 1 | P → L in PA-2. | VAR_009083 | |||||
| Natural variant | 246 | 1 | G → V in PA-2. Ref.18 | VAR_023853 | |||||
| Natural variant | 287 | 1 | P → S. Ref.1 Corresponds to variant rs2228310 [ dbSNP | Ensembl ]. | VAR_048163 | |||||
| Natural variant | 341 | 1 | Missing in PA-2. Ref.18 | VAR_023854 | |||||
| Natural variant | 408 | 1 | Missing in PA-2. Ref.11 Ref.13 | VAR_000277 | |||||
| Natural variant | 410 | 1 | R → W in PA-2. Ref.13 Ref.18 Ref.19 | VAR_000278 | |||||
| Natural variant | 428 | 1 | T → I in PA-2. Ref.17 Ref.19 Corresponds to variant rs28934887 [ dbSNP | Ensembl ]. | VAR_009084 | |||||
| Natural variant | 430 | 1 | I → L in PA-2. Ref.17 | VAR_023855 | |||||
| Natural variant | 435 | 1 | Y → C in PA-2. Ref.17 | VAR_023856 | |||||
| Natural variant | 439 | 1 | Y → C in PA-2. Ref.17 | VAR_023857 | |||||
| Natural variant | 442 | 1 | M → T in PA-2. Ref.14 | VAR_009085 | |||||
| Natural variant | 468 | 1 | A → T in PA-2. Ref.17 | VAR_023858 | |||||
| Natural variant | 497 | 1 | A → V in PA-2; common mutation; does not affect either heteromeric or homomeric assembly. Ref.16 | VAR_000279 | |||||
| Natural variant | 512 | 1 | R → C in PA-2; affects heteromeric and homomeric assembly. Ref.16 Ref.19 | VAR_000280 | |||||
| Natural variant | 519 | 1 | L → P in PA-2; affects heteromeric and homomeric assembly. Ref.16 | VAR_000281 | |||||
| Natural variant | 536 | 1 | N → D in PA-2; affects heteromeric and homomeric assembly. Ref.16 | VAR_009086 | |||||
Experimental info | |||||||||
| Sequence conflict | 58 – 59 | 2 | QH → HD in AAB28900. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Correction of the metabolic defect in propionic acidemia fibroblasts by microinjection of a full-length cDNA or RNA transcript encoding the propionyl-CoA carboxylase beta subunit." Lamhonwah A.-M., Leclerc D., Loyer M., Clarizio R., Gravel R.A. Genomics 19:500-505(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT SER-287. Tissue: Fibroblast, Kidney and Liver. |
| [2] | "The molecular defect in propionic acidemia: exon skipping caused by an 8-bp deletion from an intron in the PCCB allele." Ohura T., Ogasawara M., Ikeda H., Narisawa K., Tada K. Hum. Genet. 92:397-402(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Liver and Placenta. |
| [3] | "Human propionyl-CoA carboxylase beta subunit gene: exon-intron definition and mutation spectrum in Spanish and Latin American propionic acidemia patients." Rodriguez-Pombo P., Hoenicka J., Muro S., Perez B., Perez-Cerda C., Richard E., Desviat L.R., Ugarte M. Am. J. Hum. Genet. 63:360-369(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS PA-2. Tissue: Blood and Skin fibroblast. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Caudate nucleus. |
| [5] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Pancreas and Skin. |
| [8] | "Isolation of cDNA clones coding for the alpha and beta chains of human propionyl-CoA carboxylase: chromosomal assignments and DNA polymorphisms associated with PCCA and PCCB genes." Lamhonwah A.-M., Barankiewicz T.J., Willard H.F., Mahuran D.J., Quan F., Gravel R.A. Proc. Natl. Acad. Sci. U.S.A. 83:4864-4868(1986) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 289-443 (ISOFORM 1). |
| [9] | "Mitochondrial targeting signals and mature peptides of 3-methylcrotonyl-CoA carboxylase." Stadler S.C., Polanetz R., Meier S., Mayerhofer P.U., Herrmann J.M., Anslinger K., Roscher A.A., Roschinger W., Holzinger A. Biochem. Biophys. Res. Commun. 334:939-946(2005) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 29-33, SUBCELLULAR LOCATION. Tissue: Kidney. |
| [10] | Lamhonwah A.-M. Submitted (DEC-1986) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION. |
| [11] | "An unusual insertion/deletion in the gene encoding the beta-subunit of propionyl-CoA carboxylase is a frequent mutation in Caucasian propionic acidemia." Tahara T., Kraus J.P., Rosenberg L.E. Proc. Natl. Acad. Sci. U.S.A. 87:1372-1376(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 401-433, VARIANT PA-2 ILE-408 DEL. Tissue: Skin fibroblast. |
| [12] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "Three independent mutations in the same exon of the PCCB gene: differences between Caucasian and Japanese propionic acidaemia." Tahara T., Kraus J.P., Ohura T., Rosenberg L.E., Fenton W.A. J. Inherit. Metab. Dis. 16:353-360(1993) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PA-2 TRP-410 AND ILE-408 DEL. |
| [14] | "Identification of novel mutations in the PCCB gene in European propionic acidemia patients." Muro S., Rodriguez-Pombo P., Perez B., Perez-Cerda C., Desviat L.R., Sperl W., Skladal D., Sass J.O., Ugarte M. Hum. Mutat. 14:89-90(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PA-2 MET-17; LYS-168; ASP-205 AND THR-442. |
| [15] | "Overview of mutations in the PCCA and PCCB genes causing propionic acidemia." Ugarte M., Perez-Cerda C., Rodriguez-Pombo P., Desviat L.R., Perez B., Richard E., Muro S., Campeau E., Ohura T., Gravel R.A. Hum. Mutat. 14:275-282(1999) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON PA VARIANTS. |
| [16] | "Effect of PCCB gene mutations on the heteromeric and homomeric assembly of propionyl-CoA carboxylase." Muro S., Perez B., Desviat L.R., Rodriguez-Pombo P., Perez-Cerda C., Clavero S., Ugarte M. Mol. Genet. Metab. 74:476-483(2001) [PubMed] [Europe PMC] [Abstract] Cited for: CHARACTERIZATION OF VARIANTS PA-2 GLN-165; VAL-497; CYS-512; PRO-519 AND ASP-536. |
| [17] | "Unexpectedly high prevalence of the mild form of propionic acidemia in Japan: presence of a common mutation and possible clinical implications." Yorifuji T., Kawai M., Muroi J., Mamada M., Kurokawa K., Shigematsu Y., Hirano S., Sakura N., Yoshida I., Kuhara T., Endo F., Mitsubuchi H., Nakahata T. Hum. Genet. 111:161-165(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PA-2 ILE-428; LEU-430; CYS-435; CYS-439 AND THR-468. |
| [18] | "Propionic acidemia: identification of twenty-four novel mutations in Europe and North America." Perez B., Desviat L.R., Rodriguez-Pombo P., Clavero S., Navarrete R., Perez-Cerda C., Ugarte M. Mol. Genet. Metab. 78:59-67(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PA-2 SER-67; MET-107; ASP-112; GLN-165; LYS-168; ARG-188; VAL-246; ILE-341 DEL AND TRP-410. |
| [19] | "Mutation spectrum of the PCCA and PCCB genes in Japanese patients with propionic acidemia." Yang X., Sakamoto O., Matsubara Y., Kure S., Suzuki Y., Aoki Y., Yamaguchi S., Takahashi Y., Nishikubo T., Kawaguchi C., Yoshioka A., Kimura T., Hayasaka K., Kohno Y., Iinuma K., Ohura T. Mol. Genet. Metab. 81:335-342(2004) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PA-2 PRO-153; TRP-165; TRP-410; ILE-428 AND CYS-512. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X73424 mRNA. Translation: CAA51825.1. S67325 mRNA. Translation: AAB28900.1. AJ006487 AJ006499 Genomic DNA. Translation: CAA07066.1.AK295312 mRNA. Translation: BAH12030.1. AC069524 Genomic DNA. No translation available. CH471052 Genomic DNA. Translation: EAW79118.1. BC013768 mRNA. Translation: AAH13768.1. BC053661 mRNA. Translation: AAH53661.1. M13573 mRNA. Translation: AAA60036.1. M31167 Genomic DNA. Translation: AAA60037.1. M31169 Genomic DNA. Translation: AAA60038.1. |
| IPI | IPI00007247. IPI00921904. |
| PIR | T45009. |
| RefSeq | NP_000523.2. NM_000532.4. NP_001171485.1. NM_001178014.1. |
| UniGene | Hs.63788. |
3D structure databases | |
| ProteinModelPortal | P05166. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-38244N. |
| IntAct | P05166. 6 interactions. |
| MINT | MINT-3004663. |
| STRING | 9606.ENSP00000251654. |
PTM databases | |
| PhosphoSite | P05166. |
Polymorphism databases | |
| DMDM | 124106304. |
Proteomic databases | |
| PaxDb | P05166. |
| PeptideAtlas | P05166. |
| PRIDE | P05166. |
Protocols and materials databases | |
| DNASU | 5096. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000251654; ENSP00000251654; ENSG00000114054. ENST00000469217; ENSP00000419027; ENSG00000114054. |
| GeneID | 5096. |
| KEGG | hsa:5096. |
| UCSC | uc003eqy.2. human. uc011bmc.2. human. |
Organism-specific databases | |
| CTD | 5096. |
| GeneCards | GC03P135969. |
| HGNC | HGNC:8654. PCCB. |
| HPA | HPA036939. HPA036940. |
| MIM | 232050. gene. 606054. phenotype. |
| neXtProt | NX_P05166. |
| Orphanet | 35. Propionic acidemia. |
| PharmGKB | PA32993. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG4799. |
| HOGENOM | HOG000218693. |
| HOVERGEN | HBG003970. |
| InParanoid | P05166. |
| KO | K01966. |
| PhylomeDB | P05166. |
Enzyme and pathway databases | |
| BRENDA | 6.4.1.3. 2681. |
| Reactome | REACT_111217. Metabolism. |
| SABIO-RK | P05166. |
| UniPathway | UPA00945; UER00908. |
Gene expression databases | |
| ArrayExpress | P05166. |
| Bgee | P05166. |
| CleanEx | HS_PCCB. |
| Genevestigator | P05166. |
| GermOnline | ENSG00000114054. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000022. Carboxyl_trans. IPR011763. COA_CT_C. IPR011762. COA_CT_N. [Graphical view] |
| Pfam | PF01039. Carboxyl_trans. 1 hit. [Graphical view] |
| PROSITE | PS50989. COA_CT_CTER. 1 hit. PS50980. COA_CT_NTER. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| DrugBank | DB00121. Biotin. DB00161. L-Valine. |
| GenomeRNAi | 5096. |
| NextBio | 19660. |
| SOURCE | Search... |
Entry information
| Entry name | PCCB_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P05166 Secondary accession number(s): B7Z2Z4, Q16813, Q96CX0 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
