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Protein

Lectin

Gene

LE1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds GalNAc and galactose.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Lectin

Names & Taxonomyi

Protein namesi
Recommended name:
Lectin
Alternative name(s):
Agglutinin
SBA
Gene namesi
Name:LE1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 2

Pathology & Biotechi

Protein family/group databases

Allergomei1429. Gly m Agglutinin.

Chemistry

ChEMBLiCHEMBL1649056.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232Add
BLAST
Chaini33 – 285253LectinPRO_0000017647Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi107 – 1071N-linked (GlcNAc...)

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiP05046.

PTM databases

UniCarbKBiP05046.

Expressioni

Gene expression databases

GenevisibleiP05046. GM.

Interactioni

Subunit structurei

Homotetramer.

Protein-protein interaction databases

STRINGi3847.GLYMA02G01590.1.

Structurei

Secondary structure

1
285
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi34 – 429Combined sources
Beta strandi50 – 545Combined sources
Beta strandi60 – 623Combined sources
Beta strandi71 – 733Combined sources
Beta strandi80 – 878Combined sources
Turni94 – 963Combined sources
Beta strandi101 – 11111Combined sources
Turni113 – 1164Combined sources
Beta strandi120 – 1289Combined sources
Helixi137 – 1393Combined sources
Turni140 – 1423Combined sources
Beta strandi145 – 1473Combined sources
Beta strandi153 – 1586Combined sources
Beta strandi167 – 17913Combined sources
Beta strandi181 – 1855Combined sources
Beta strandi194 – 2007Combined sources
Turni202 – 2043Combined sources
Beta strandi206 – 2138Combined sources
Turni214 – 2174Combined sources
Beta strandi218 – 2258Combined sources
Helixi228 – 2314Combined sources
Beta strandi234 – 24411Combined sources
Beta strandi246 – 2483Combined sources
Beta strandi252 – 26413Combined sources
Helixi277 – 2815Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1G9FX-ray2.50A33-285[»]
1SBDX-ray2.52A33-285[»]
1SBEX-ray2.80A33-285[»]
1SBFX-ray2.43A33-285[»]
2SBAX-ray2.60A33-285[»]
4D69X-ray2.70A/B/C/D/E/F/G/H/I/J/K/L33-285[»]
ProteinModelPortaliP05046.
SMRiP05046. Positions 33-266.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP05046.

Family & Domainsi

Sequence similaritiesi

Belongs to the leguminous lectin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

InParanoidiP05046.
OMAiDIPGESH.
OrthoDBiEOG09360PBL.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR016363. L-lectin.
IPR000985. Lectin_LegA_CS.
IPR019825. Lectin_legB_Mn/Ca_BS.
IPR001220. Legume_lectin_dom.
[Graphical view]
PfamiPF00139. Lectin_legB. 1 hit.
[Graphical view]
PIRSFiPIRSF002690. L-type_lectin_plant. 1 hit.
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS00308. LECTIN_LEGUME_ALPHA. 1 hit.
PS00307. LECTIN_LEGUME_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P05046-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSKLKTQN VVVSLSLTLT LVLVLLTSKA NSAETVSFSW NKFVPKQPNM
60 70 80 90 100
ILQGDAIVTS SGKLQLNKVD ENGTPKPSSL GRALYSTPIH IWDKETGSVA
110 120 130 140 150
SFAASFNFTF YAPDTKRLAD GLAFFLAPID TKPQTHAGYL GLFNENESGD
160 170 180 190 200
QVVAVEFDTF RNSWDPPNPH IGINVNSIRS IKTTSWDLAN NKVAKVLITY
210 220 230 240 250
DASTSLLVAS LVYPSQRTSN ILSDVVDLKT SLPEWVRIGF SAATGLDIPG
260 270 280
ESHDVLSWSF ASNLPHASSN IDPLDLTSFV LHEAI
Length:285
Mass (Da):30,928
Last modified:August 13, 1987 - v1
Checksum:iB3704533C9315C52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K00821 Genomic DNA. Translation: AAA33983.1.
PIRiS27365.
RefSeqiXP_003518800.1. XM_003518752.3.

Genome annotation databases

EnsemblPlantsiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
GeneIDi100818710.
GrameneiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
KEGGigmx:100818710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K00821 Genomic DNA. Translation: AAA33983.1.
PIRiS27365.
RefSeqiXP_003518800.1. XM_003518752.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1G9FX-ray2.50A33-285[»]
1SBDX-ray2.52A33-285[»]
1SBEX-ray2.80A33-285[»]
1SBFX-ray2.43A33-285[»]
2SBAX-ray2.60A33-285[»]
4D69X-ray2.70A/B/C/D/E/F/G/H/I/J/K/L33-285[»]
ProteinModelPortaliP05046.
SMRiP05046. Positions 33-266.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA02G01590.1.

Chemistry

ChEMBLiCHEMBL1649056.

Protein family/group databases

Allergomei1429. Gly m Agglutinin.

PTM databases

UniCarbKBiP05046.

Proteomic databases

PRIDEiP05046.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
GeneIDi100818710.
GrameneiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
KEGGigmx:100818710.

Phylogenomic databases

InParanoidiP05046.
OMAiDIPGESH.
OrthoDBiEOG09360PBL.

Miscellaneous databases

EvolutionaryTraceiP05046.
PROiP05046.

Gene expression databases

GenevisibleiP05046. GM.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR016363. L-lectin.
IPR000985. Lectin_LegA_CS.
IPR019825. Lectin_legB_Mn/Ca_BS.
IPR001220. Legume_lectin_dom.
[Graphical view]
PfamiPF00139. Lectin_legB. 1 hit.
[Graphical view]
PIRSFiPIRSF002690. L-type_lectin_plant. 1 hit.
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS00308. LECTIN_LEGUME_ALPHA. 1 hit.
PS00307. LECTIN_LEGUME_BETA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLEC_SOYBN
AccessioniPrimary (citable) accession number: P05046
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: August 13, 1987
Last modified: September 7, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.