Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Lectin

Gene

LE1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds GalNAc and galactose.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Lectin

Names & Taxonomyi

Protein namesi
Recommended name:
Lectin
Alternative name(s):
Agglutinin
SBA
Gene namesi
Name:LE1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 2

Pathology & Biotechi

Protein family/group databases

Allergomei1429. Gly m Agglutinin.

Chemistry databases

ChEMBLiCHEMBL1649056.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 32Add BLAST32
ChainiPRO_000001764733 – 285LectinAdd BLAST253

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi107N-linked (GlcNAc...)1

Keywords - PTMi

Glycoprotein

PTM databases

UniCarbKBiP05046.

Expressioni

Gene expression databases

GenevisibleiP05046. GM.

Interactioni

Subunit structurei

Homotetramer.

Protein-protein interaction databases

STRINGi3847.GLYMA02G01590.1.

Structurei

Secondary structure

1285
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi34 – 42Combined sources9
Beta strandi50 – 54Combined sources5
Beta strandi60 – 62Combined sources3
Beta strandi71 – 73Combined sources3
Beta strandi80 – 87Combined sources8
Turni94 – 96Combined sources3
Beta strandi101 – 111Combined sources11
Turni113 – 116Combined sources4
Beta strandi120 – 128Combined sources9
Helixi137 – 139Combined sources3
Turni140 – 142Combined sources3
Beta strandi145 – 147Combined sources3
Beta strandi153 – 158Combined sources6
Beta strandi167 – 179Combined sources13
Beta strandi181 – 185Combined sources5
Beta strandi194 – 200Combined sources7
Turni202 – 204Combined sources3
Beta strandi206 – 213Combined sources8
Turni214 – 217Combined sources4
Beta strandi218 – 225Combined sources8
Helixi228 – 231Combined sources4
Beta strandi234 – 244Combined sources11
Beta strandi246 – 248Combined sources3
Beta strandi252 – 264Combined sources13
Helixi277 – 281Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1G9FX-ray2.50A33-285[»]
1SBDX-ray2.52A33-285[»]
1SBEX-ray2.80A33-285[»]
1SBFX-ray2.43A33-285[»]
2SBAX-ray2.60A33-285[»]
4D69X-ray2.70A/B/C/D/E/F/G/H/I/J/K/L33-285[»]
ProteinModelPortaliP05046.
SMRiP05046.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP05046.

Family & Domainsi

Sequence similaritiesi

Belongs to the leguminous lectin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

InParanoidiP05046.
OMAiDIPGESH.
OrthoDBiEOG09360PBL.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR016363. L-lectin.
IPR000985. Lectin_LegA_CS.
IPR019825. Lectin_legB_Mn/Ca_BS.
IPR001220. Legume_lectin_dom.
[Graphical view]
PfamiPF00139. Lectin_legB. 1 hit.
[Graphical view]
PIRSFiPIRSF002690. L-type_lectin_plant. 1 hit.
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS00308. LECTIN_LEGUME_ALPHA. 1 hit.
PS00307. LECTIN_LEGUME_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P05046-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSKLKTQN VVVSLSLTLT LVLVLLTSKA NSAETVSFSW NKFVPKQPNM
60 70 80 90 100
ILQGDAIVTS SGKLQLNKVD ENGTPKPSSL GRALYSTPIH IWDKETGSVA
110 120 130 140 150
SFAASFNFTF YAPDTKRLAD GLAFFLAPID TKPQTHAGYL GLFNENESGD
160 170 180 190 200
QVVAVEFDTF RNSWDPPNPH IGINVNSIRS IKTTSWDLAN NKVAKVLITY
210 220 230 240 250
DASTSLLVAS LVYPSQRTSN ILSDVVDLKT SLPEWVRIGF SAATGLDIPG
260 270 280
ESHDVLSWSF ASNLPHASSN IDPLDLTSFV LHEAI
Length:285
Mass (Da):30,928
Last modified:August 13, 1987 - v1
Checksum:iB3704533C9315C52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K00821 Genomic DNA. Translation: AAA33983.1.
PIRiS27365.
RefSeqiXP_003518800.1. XM_003518752.3.

Genome annotation databases

EnsemblPlantsiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
GeneIDi100818710.
GrameneiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
KEGGigmx:100818710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K00821 Genomic DNA. Translation: AAA33983.1.
PIRiS27365.
RefSeqiXP_003518800.1. XM_003518752.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1G9FX-ray2.50A33-285[»]
1SBDX-ray2.52A33-285[»]
1SBEX-ray2.80A33-285[»]
1SBFX-ray2.43A33-285[»]
2SBAX-ray2.60A33-285[»]
4D69X-ray2.70A/B/C/D/E/F/G/H/I/J/K/L33-285[»]
ProteinModelPortaliP05046.
SMRiP05046.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA02G01590.1.

Chemistry databases

ChEMBLiCHEMBL1649056.

Protein family/group databases

Allergomei1429. Gly m Agglutinin.

PTM databases

UniCarbKBiP05046.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
GeneIDi100818710.
GrameneiGLYMA02G01590.1; GLYMA02G01590.1; GLYMA02G01590.
KEGGigmx:100818710.

Phylogenomic databases

InParanoidiP05046.
OMAiDIPGESH.
OrthoDBiEOG09360PBL.

Miscellaneous databases

EvolutionaryTraceiP05046.
PROiP05046.

Gene expression databases

GenevisibleiP05046. GM.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR016363. L-lectin.
IPR000985. Lectin_LegA_CS.
IPR019825. Lectin_legB_Mn/Ca_BS.
IPR001220. Legume_lectin_dom.
[Graphical view]
PfamiPF00139. Lectin_legB. 1 hit.
[Graphical view]
PIRSFiPIRSF002690. L-type_lectin_plant. 1 hit.
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS00308. LECTIN_LEGUME_ALPHA. 1 hit.
PS00307. LECTIN_LEGUME_BETA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLEC_SOYBN
AccessioniPrimary (citable) accession number: P05046
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: August 13, 1987
Last modified: November 2, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.