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Protein

Lectin

Gene

LE1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds GalNAc and galactose.

GO - Molecular functioni

Keywordsi

LigandLectin

Names & Taxonomyi

Protein namesi
Recommended name:
Lectin
Alternative name(s):
Agglutinin
SBA
Gene namesi
Name:LE1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 2

Pathology & Biotechi

Protein family/group databases

Allergomei1429 Gly m Agglutinin

Chemistry databases

ChEMBLiCHEMBL1649056

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 32Add BLAST32
ChainiPRO_000001764733 – 285LectinAdd BLAST253

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi107N-linked (GlcNAc...) asparagine1

Keywords - PTMi

Glycoprotein

PTM databases

GlyConnecti333
UniCarbKBiP05046

Expressioni

Gene expression databases

GenevisibleiP05046 GM

Interactioni

Subunit structurei

Homotetramer.

Protein-protein interaction databases

IntActiP05046, 1 interactor
STRINGi3847.GLYMA02G01590.1

Structurei

Secondary structure

1285
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi34 – 42Combined sources9
Beta strandi50 – 54Combined sources5
Beta strandi60 – 62Combined sources3
Beta strandi71 – 73Combined sources3
Beta strandi80 – 87Combined sources8
Turni94 – 96Combined sources3
Beta strandi101 – 111Combined sources11
Turni113 – 116Combined sources4
Beta strandi120 – 128Combined sources9
Helixi137 – 139Combined sources3
Turni140 – 142Combined sources3
Beta strandi145 – 147Combined sources3
Beta strandi153 – 158Combined sources6
Beta strandi167 – 179Combined sources13
Beta strandi181 – 185Combined sources5
Beta strandi194 – 200Combined sources7
Turni202 – 204Combined sources3
Beta strandi206 – 213Combined sources8
Turni214 – 217Combined sources4
Beta strandi218 – 225Combined sources8
Helixi228 – 231Combined sources4
Beta strandi234 – 244Combined sources11
Beta strandi246 – 248Combined sources3
Beta strandi252 – 264Combined sources13
Helixi277 – 281Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1G9FX-ray2.50A33-285[»]
1SBDX-ray2.52A33-285[»]
1SBEX-ray2.80A33-285[»]
1SBFX-ray2.43A33-285[»]
2SBAX-ray2.60A33-285[»]
4D69X-ray2.70A/B/C/D/E/F/G/H/I/J/K/L33-285[»]
ProteinModelPortaliP05046
SMRiP05046
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP05046

Family & Domainsi

Sequence similaritiesi

Belongs to the leguminous lectin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

InParanoidiP05046
OMAiWITYSEE
OrthoDBiEOG09360PBL

Family and domain databases

CDDicd06899 lectin_legume_LecRK_Arcelin_Co, 1 hit
InterProiView protein in InterPro
IPR013320 ConA-like_dom_sf
IPR016363 L-lectin
IPR000985 Lectin_LegA_CS
IPR019825 Lectin_legB_Mn/Ca_BS
IPR001220 Legume_lectin_dom
PfamiView protein in Pfam
PF00139 Lectin_legB, 1 hit
PIRSFiPIRSF002690 L-type_lectin_plant, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS00308 LECTIN_LEGUME_ALPHA, 1 hit
PS00307 LECTIN_LEGUME_BETA, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P05046-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSKLKTQN VVVSLSLTLT LVLVLLTSKA NSAETVSFSW NKFVPKQPNM
60 70 80 90 100
ILQGDAIVTS SGKLQLNKVD ENGTPKPSSL GRALYSTPIH IWDKETGSVA
110 120 130 140 150
SFAASFNFTF YAPDTKRLAD GLAFFLAPID TKPQTHAGYL GLFNENESGD
160 170 180 190 200
QVVAVEFDTF RNSWDPPNPH IGINVNSIRS IKTTSWDLAN NKVAKVLITY
210 220 230 240 250
DASTSLLVAS LVYPSQRTSN ILSDVVDLKT SLPEWVRIGF SAATGLDIPG
260 270 280
ESHDVLSWSF ASNLPHASSN IDPLDLTSFV LHEAI
Length:285
Mass (Da):30,928
Last modified:August 13, 1987 - v1
Checksum:iB3704533C9315C52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K00821 Genomic DNA Translation: AAA33983.1
PIRiS27365
RefSeqiXP_003518800.1, XM_003518752.3
UniGeneiGma.32294

Genome annotation databases

EnsemblPlantsiKRH69220; KRH69220; GLYMA_02G012600
GeneIDi100818710
GrameneiKRH69220; KRH69220; GLYMA_02G012600
KEGGigmx:100818710

Similar proteinsi

Entry informationi

Entry nameiLEC_SOYBN
AccessioniPrimary (citable) accession number: P05046
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: August 13, 1987
Last modified: April 25, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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