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Protein

Glycinin G1

Gene

GY1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glycinin is the major seed storage protein of soybean.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Names & Taxonomyi

Protein namesi
Recommended name:
Glycinin G1
Cleaved into the following 2 chains:
Gene namesi
Name:GY1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 3

Pathology & Biotechi

Protein family/group databases

Allergomei1142. Gly m 6.0101.
5821. Gly m 6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Add BLAST19
ChainiPRO_000003200920 – 306Glycinin A1a subunitAdd BLAST287
PropeptideiPRO_0000032010307 – 3104
ChainiPRO_0000032011311 – 490Glycinin Bx subunitAdd BLAST180
PropeptideiPRO_0000032012491 – 4955

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi31 ↔ 64
Disulfide bondi107 ↔ 317Interchain (between A1a and Bx chains)

Post-translational modificationi

The precursor is post-translationally processed to form a covalently linked A1a-Bx subunit complex.

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiP04776.

Expressioni

Gene expression databases

GenevisibleiP04776. GM.

Interactioni

Subunit structurei

Hexamer; each subunit is composed of an acidic and a basic chain derived from a single precursor and linked by a disulfide bond.2 Publications

Protein-protein interaction databases

STRINGi3847.GLYMA03G32030.1.

Structurei

Secondary structure

1495
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi44 – 47Combined sources4
Beta strandi50 – 54Combined sources5
Helixi60 – 65Combined sources6
Beta strandi68 – 74Combined sources7
Beta strandi78 – 87Combined sources10
Beta strandi89 – 95Combined sources7
Beta strandi98 – 103Combined sources6
Beta strandi133 – 136Combined sources4
Beta strandi140 – 144Combined sources5
Beta strandi149 – 154Combined sources6
Beta strandi156 – 158Combined sources3
Beta strandi160 – 166Combined sources7
Beta strandi181 – 187Combined sources7
Helixi193 – 196Combined sources4
Helixi220 – 223Combined sources4
Helixi226 – 233Combined sources8
Helixi237 – 243Combined sources7
Beta strandi254 – 257Combined sources4
Beta strandi322 – 324Combined sources3
Beta strandi326 – 329Combined sources4
Beta strandi332 – 335Combined sources4
Turni336 – 338Combined sources3
Beta strandi339 – 344Combined sources6
Turni346 – 348Combined sources3
Helixi350 – 352Combined sources3
Turni353 – 356Combined sources4
Beta strandi359 – 364Combined sources6
Beta strandi369 – 375Combined sources7
Beta strandi380 – 394Combined sources15
Beta strandi400 – 407Combined sources8
Beta strandi411 – 414Combined sources4
Beta strandi419 – 424Combined sources6
Beta strandi429 – 439Combined sources11
Beta strandi442 – 447Combined sources6
Helixi452 – 454Combined sources3
Helixi457 – 464Combined sources8
Helixi468 – 476Combined sources9
Beta strandi481 – 484Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FXZX-ray2.80A/B/C20-495[»]
1UCXX-ray3.20A/B/C20-495[»]
1UD1X-ray3.10A/B/C20-495[»]
ProteinModelPortaliP04776.
SMRiP04776.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP04776.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP04776.
OMAiEEREWHS.
OrthoDBiEOG093607KS.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P04776-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKLVFSLCF LLFSGCCFAF SSREQPQQNE CQIQKLNALK PDNRIESEGG
60 70 80 90 100
LIETWNPNNK PFQCAGVALS RCTLNRNALR RPSYTNGPQE IYIQQGKGIF
110 120 130 140 150
GMIYPGCPST FEEPQQPQQR GQSSRPQDRH QKIYNFREGD LIAVPTGVAW
160 170 180 190 200
WMYNNEDTPV VAVSIIDTNS LENQLDQMPR RFYLAGNQEQ EFLKYQQEQG
210 220 230 240 250
GHQSQKGKHQ QEEENEGGSI LSGFTLEFLE HAFSVDKQIA KNLQGENEGE
260 270 280 290 300
DKGAIVTVKG GLSVIKPPTD EQQQRPQEEE EEEEDEKPQC KGKDKHCQRP
310 320 330 340 350
RGSQSKSRRN GIDETICTMR LRHNIGQTSS PDIYNPQAGS VTTATSLDFP
360 370 380 390 400
ALSWLRLSAE FGSLRKNAMF VPHYNLNANS IIYALNGRAL IQVVNCNGER
410 420 430 440 450
VFDGELQEGR VLIVPQNFVV AARSQSDNFE YVSFKTNDTP MIGTLAGANS
460 470 480 490
LLNALPEEVI QHTFNLKSQQ ARQIKNNNPF KFLVPPQESQ KRAVA
Length:495
Mass (Da):55,706
Last modified:October 1, 1989 - v2
Checksum:i329CB0545B24D894
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti42D → G in CAA26723 (PubMed:2997720).Curated1
Sequence conflicti108P → S in CAA26723 (PubMed:2997720).Curated1
Sequence conflicti136F → S in CAA26723 (PubMed:2997720).Curated1
Sequence conflicti360E → G in CAA26723 (PubMed:2997720).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M36686 mRNA. Translation: AAA33966.1.
X15121 Genomic DNA. Translation: CAA33215.1.
X02985 mRNA. Translation: CAA26723.1.
AB113349 mRNA. Translation: BAC78522.1.
PIRiA23497. FWSYG2.
S10851.
RefSeqiNP_001235827.1. NM_001248898.2.
UniGeneiGma.1897.

Genome annotation databases

EnsemblPlantsiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
GeneIDi547901.
GrameneiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
KEGGigmx:547901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M36686 mRNA. Translation: AAA33966.1.
X15121 Genomic DNA. Translation: CAA33215.1.
X02985 mRNA. Translation: CAA26723.1.
AB113349 mRNA. Translation: BAC78522.1.
PIRiA23497. FWSYG2.
S10851.
RefSeqiNP_001235827.1. NM_001248898.2.
UniGeneiGma.1897.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FXZX-ray2.80A/B/C20-495[»]
1UCXX-ray3.20A/B/C20-495[»]
1UD1X-ray3.10A/B/C20-495[»]
ProteinModelPortaliP04776.
SMRiP04776.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA03G32030.1.

Protein family/group databases

Allergomei1142. Gly m 6.0101.
5821. Gly m 6.

Proteomic databases

PRIDEiP04776.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
GeneIDi547901.
GrameneiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
KEGGigmx:547901.

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP04776.
OMAiEEREWHS.
OrthoDBiEOG093607KS.

Miscellaneous databases

EvolutionaryTraceiP04776.

Gene expression databases

GenevisibleiP04776. GM.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLYG1_SOYBN
AccessioniPrimary (citable) accession number: P04776
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: October 1, 1989
Last modified: November 2, 2016
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.