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Protein

Glycinin G1

Gene

GY1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glycinin is the major seed storage protein of soybean.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Names & Taxonomyi

Protein namesi
Recommended name:
Glycinin G1
Cleaved into the following 2 chains:
Gene namesi
Name:GY1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Chromosome 3

Pathology & Biotechi

Protein family/group databases

Allergomei1142. Gly m 6.0101.
5821. Gly m 6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Add
BLAST
Chaini20 – 306287Glycinin A1a subunitPRO_0000032009Add
BLAST
Propeptidei307 – 3104PRO_0000032010
Chaini311 – 490180Glycinin Bx subunitPRO_0000032011Add
BLAST
Propeptidei491 – 4955PRO_0000032012

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi31 ↔ 64
Disulfide bondi107 ↔ 317Interchain (between A1a and Bx chains)

Post-translational modificationi

The precursor is post-translationally processed to form a covalently linked A1a-Bx subunit complex.

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiP04776.

Expressioni

Gene expression databases

GenevisibleiP04776. GM.

Interactioni

Subunit structurei

Hexamer; each subunit is composed of an acidic and a basic chain derived from a single precursor and linked by a disulfide bond.2 Publications

Protein-protein interaction databases

STRINGi3847.GLYMA03G32030.1.

Structurei

Secondary structure

1
495
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi44 – 474Combined sources
Beta strandi50 – 545Combined sources
Helixi60 – 656Combined sources
Beta strandi68 – 747Combined sources
Beta strandi78 – 8710Combined sources
Beta strandi89 – 957Combined sources
Beta strandi98 – 1036Combined sources
Beta strandi133 – 1364Combined sources
Beta strandi140 – 1445Combined sources
Beta strandi149 – 1546Combined sources
Beta strandi156 – 1583Combined sources
Beta strandi160 – 1667Combined sources
Beta strandi181 – 1877Combined sources
Helixi193 – 1964Combined sources
Helixi220 – 2234Combined sources
Helixi226 – 2338Combined sources
Helixi237 – 2437Combined sources
Beta strandi254 – 2574Combined sources
Beta strandi322 – 3243Combined sources
Beta strandi326 – 3294Combined sources
Beta strandi332 – 3354Combined sources
Turni336 – 3383Combined sources
Beta strandi339 – 3446Combined sources
Turni346 – 3483Combined sources
Helixi350 – 3523Combined sources
Turni353 – 3564Combined sources
Beta strandi359 – 3646Combined sources
Beta strandi369 – 3757Combined sources
Beta strandi380 – 39415Combined sources
Beta strandi400 – 4078Combined sources
Beta strandi411 – 4144Combined sources
Beta strandi419 – 4246Combined sources
Beta strandi429 – 43911Combined sources
Beta strandi442 – 4476Combined sources
Helixi452 – 4543Combined sources
Helixi457 – 4648Combined sources
Helixi468 – 4769Combined sources
Beta strandi481 – 4844Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FXZX-ray2.80A/B/C20-495[»]
1UCXX-ray3.20A/B/C20-495[»]
1UD1X-ray3.10A/B/C20-495[»]
ProteinModelPortaliP04776.
SMRiP04776. Positions 29-489.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP04776.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP04776.
OMAiEEREWHS.
OrthoDBiEOG093607KS.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P04776-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKLVFSLCF LLFSGCCFAF SSREQPQQNE CQIQKLNALK PDNRIESEGG
60 70 80 90 100
LIETWNPNNK PFQCAGVALS RCTLNRNALR RPSYTNGPQE IYIQQGKGIF
110 120 130 140 150
GMIYPGCPST FEEPQQPQQR GQSSRPQDRH QKIYNFREGD LIAVPTGVAW
160 170 180 190 200
WMYNNEDTPV VAVSIIDTNS LENQLDQMPR RFYLAGNQEQ EFLKYQQEQG
210 220 230 240 250
GHQSQKGKHQ QEEENEGGSI LSGFTLEFLE HAFSVDKQIA KNLQGENEGE
260 270 280 290 300
DKGAIVTVKG GLSVIKPPTD EQQQRPQEEE EEEEDEKPQC KGKDKHCQRP
310 320 330 340 350
RGSQSKSRRN GIDETICTMR LRHNIGQTSS PDIYNPQAGS VTTATSLDFP
360 370 380 390 400
ALSWLRLSAE FGSLRKNAMF VPHYNLNANS IIYALNGRAL IQVVNCNGER
410 420 430 440 450
VFDGELQEGR VLIVPQNFVV AARSQSDNFE YVSFKTNDTP MIGTLAGANS
460 470 480 490
LLNALPEEVI QHTFNLKSQQ ARQIKNNNPF KFLVPPQESQ KRAVA
Length:495
Mass (Da):55,706
Last modified:October 1, 1989 - v2
Checksum:i329CB0545B24D894
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti42 – 421D → G in CAA26723 (PubMed:2997720).Curated
Sequence conflicti108 – 1081P → S in CAA26723 (PubMed:2997720).Curated
Sequence conflicti136 – 1361F → S in CAA26723 (PubMed:2997720).Curated
Sequence conflicti360 – 3601E → G in CAA26723 (PubMed:2997720).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M36686 mRNA. Translation: AAA33966.1.
X15121 Genomic DNA. Translation: CAA33215.1.
X02985 mRNA. Translation: CAA26723.1.
AB113349 mRNA. Translation: BAC78522.1.
PIRiA23497. FWSYG2.
S10851.
RefSeqiNP_001235827.1. NM_001248898.2.
UniGeneiGma.1897.

Genome annotation databases

EnsemblPlantsiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
GeneIDi547901.
GrameneiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
KEGGigmx:547901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M36686 mRNA. Translation: AAA33966.1.
X15121 Genomic DNA. Translation: CAA33215.1.
X02985 mRNA. Translation: CAA26723.1.
AB113349 mRNA. Translation: BAC78522.1.
PIRiA23497. FWSYG2.
S10851.
RefSeqiNP_001235827.1. NM_001248898.2.
UniGeneiGma.1897.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FXZX-ray2.80A/B/C20-495[»]
1UCXX-ray3.20A/B/C20-495[»]
1UD1X-ray3.10A/B/C20-495[»]
ProteinModelPortaliP04776.
SMRiP04776. Positions 29-489.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA03G32030.1.

Protein family/group databases

Allergomei1142. Gly m 6.0101.
5821. Gly m 6.

Proteomic databases

PRIDEiP04776.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
GeneIDi547901.
GrameneiGLYMA03G32030.1; GLYMA03G32030.1; GLYMA03G32030.
KEGGigmx:547901.

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP04776.
OMAiEEREWHS.
OrthoDBiEOG093607KS.

Miscellaneous databases

EvolutionaryTraceiP04776.

Gene expression databases

GenevisibleiP04776. GM.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLYG1_SOYBN
AccessioniPrimary (citable) accession number: P04776
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: October 1, 1989
Last modified: September 7, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.