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P04716

- RBS_SYNP6

UniProt

P04716 - RBS_SYNP6

Protein

Ribulose bisphosphate carboxylase small chain

Gene

cbbS

Organism
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

    GO - Molecular functioni

    1. monooxygenase activity Source: UniProtKB-KW
    2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. reductive pentose-phosphate cycle Source: UniProtKB-KW

    Keywords - Molecular functioni

    Lyase, Monooxygenase, Oxidoreductase

    Keywords - Biological processi

    Calvin cycle, Carbon dioxide fixation, Photosynthesis

    Enzyme and pathway databases

    BioCyciSELO269084:GCDQ-134-MONOMER.
    SABIO-RKP04716.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chain (EC:4.1.1.39)
    Short name:
    RuBisCO small subunit
    Gene namesi
    Name:cbbS
    Synonyms:rbcS
    Ordered Locus Names:syc0129_c
    OrganismiSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
    Taxonomic identifieri269084 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
    ProteomesiUP000001175: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed
    Chaini2 – 111110Ribulose bisphosphate carboxylase small chainPRO_0000198624Add
    BLAST

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.

    Protein-protein interaction databases

    DIPiDIP-6211N.
    STRINGi269084.syc0129_c.

    Structurei

    Secondary structure

    1
    111
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni14 – 174
    Helixi23 – 3614
    Beta strandi39 – 468
    Beta strandi56 – 583
    Helixi68 – 8114
    Beta strandi85 – 939
    Turni94 – 974
    Beta strandi98 – 1069

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1RBLX-ray2.20I/J/K/L/M/N/O/P2-110[»]
    1RSCX-ray2.30I/J/K/L/M/N/O/P1-111[»]
    1UZHX-ray2.20C/F/I/J/M/P/T/W12-58[»]
    C/F/I/J/M/P/T/W102-110[»]
    ProteinModelPortaliP04716.
    SMRiP04716. Positions 2-110.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP04716.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni12 – 2110Hydrophobic

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.Curated

    Phylogenomic databases

    eggNOGiCOG4451.
    HOGENOMiHOG000141332.
    KOiK01602.
    OMAiMFDLKDA.
    OrthoDBiEOG6G20PM.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR000894. RuBisCO_sc_dom.
    [Graphical view]
    PfamiPF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    SMARTiSM00961. RuBisCO_small. 1 hit.
    [Graphical view]
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P04716-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSMKTLPKER RFETFSYLPP LSDRQIAAQI EYMIEQGFHP LIEFNEHSNP    50
    EEFYWTMWKL PLFDCKSPQQ VLDEVRECRS EYGDCYIRVA GFDNIKQCQT 100
    VSFIVHRPGR Y 111
    Length:111
    Mass (Da):13,333
    Last modified:January 23, 2007 - v3
    Checksum:iF854F73FA70BD57B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X03220 Genomic DNA. Translation: CAA26973.1.
    AP008231 Genomic DNA. Translation: BAD78319.1.
    PIRiS07351. RKYCS.
    RefSeqiWP_011242443.1. NC_006576.1.
    YP_170839.1. NC_006576.1.

    Genome annotation databases

    EnsemblBacteriaiBAD78319; BAD78319; syc0129_c.
    GeneIDi3200023.
    KEGGisyc:syc0129_c.
    PATRICi32485753. VBISynElo117686_0155.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X03220 Genomic DNA. Translation: CAA26973.1 .
    AP008231 Genomic DNA. Translation: BAD78319.1 .
    PIRi S07351. RKYCS.
    RefSeqi WP_011242443.1. NC_006576.1.
    YP_170839.1. NC_006576.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1RBL X-ray 2.20 I/J/K/L/M/N/O/P 2-110 [» ]
    1RSC X-ray 2.30 I/J/K/L/M/N/O/P 1-111 [» ]
    1UZH X-ray 2.20 C/F/I/J/M/P/T/W 12-58 [» ]
    C/F/I/J/M/P/T/W 102-110 [» ]
    ProteinModelPortali P04716.
    SMRi P04716. Positions 2-110.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-6211N.
    STRINGi 269084.syc0129_c.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD78319 ; BAD78319 ; syc0129_c .
    GeneIDi 3200023.
    KEGGi syc:syc0129_c.
    PATRICi 32485753. VBISynElo117686_0155.

    Phylogenomic databases

    eggNOGi COG4451.
    HOGENOMi HOG000141332.
    KOi K01602.
    OMAi MFDLKDA.
    OrthoDBi EOG6G20PM.

    Enzyme and pathway databases

    BioCyci SELO269084:GCDQ-134-MONOMER.
    SABIO-RK P04716.

    Miscellaneous databases

    EvolutionaryTracei P04716.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR000894. RuBisCO_sc_dom.
    [Graphical view ]
    Pfami PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    SMARTi SM00961. RuBisCO_small. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The gene for the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is located close to the gene for the large subunit in the cyanobacterium Anacystis nidulans 6301."
      Shinozaki K., Sugiura M.
      Nucleic Acids Res. 11:6957-6963(1983) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Genes for the large and small subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase constitute a single operon in a cyanobacterium Anacystis nidulans 6301."
      Shinozaki K., Sugiura M.
      Mol. Gen. Genet. 200:27-32(1985)
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    3. "Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization."
      Sugita C., Ogata K., Shikata M., Jikuya H., Takano J., Furumichi M., Kanehisa M., Omata T., Sugiura M., Sugita M.
      Photosyn. Res. 93:55-67(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27144 / PCC 6301 / SAUG 1402/1.
    4. "The X-ray structure of Synechococcus ribulose-bisphosphate carboxylase/oxygenase-activated quaternary complex at 2.2-A resolution."
      Newman J., Gutteridge S.
      J. Biol. Chem. 268:25876-25886(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
    5. "Structure of an effector-induced inactivated state of ribulose 1,5-bisphosphate carboxylase/oxygenase: the binary complex between enzyme and xylulose 1,5-bisphosphate."
      Newman J., Gutteridge S.
      Structure 2:495-502(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS).

    Entry informationi

    Entry nameiRBS_SYNP6
    AccessioniPrimary (citable) accession number: P04716
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 13, 1987
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 108 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3