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Protein

Nodulation protein D

Gene

nodD

Organism
Rhizobium leguminosarum bv. viciae
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding, Repressor
Biological processNodulation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D
Gene namesi
Name:nodD
Encoded oniPlasmid sym pRL1JI0 Publication
OrganismiRhizobium leguminosarum bv. viciae
Taxonomic identifieri387 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057171 – 303Nodulation protein DAdd BLAST303

Structurei

3D structure databases

ProteinModelPortaliP04681.
SMRiP04681.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Family and domain databases

CDDicd08462. PBP2_NodD. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR037416. NodD_PBP2.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P04681-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ISRLRDYFRD
60 70 80 90 100
DLFIMQRREL VPTPRAEALA PAVREALLHI QLSVIAWDPI NPAESDRRFR
110 120 130 140 150
IILSDFMALV FFDKIILRLA REAPGVSFEL LPLDDDPEEL LRRGDVDFLI
160 170 180 190 200
LPDLFMSGAH PKARLFEERL VCVGCPTNEQ LQGQLSLEQY MSMGHVAAKF
210 220 230 240 250
GRGLKPSVEQ WLLMQHGLKR RIELVVPGFN LIPPLLSGTN RIATIPLRLV
260 270 280 290 300
KHYERTIPLR IIEHPLPLVS FTEAVQWPAL HNTDPGNIWM REIMIQEALR

IGI
Length:303
Mass (Da):34,487
Last modified:August 13, 1987 - v1
Checksum:i1649A7B44CA87046
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00548 Genomic DNA. Translation: CAA68622.1.
PIRiA25095.

Similar proteinsi

Entry informationi

Entry nameiNODD_RHILV
AccessioniPrimary (citable) accession number: P04681
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: August 13, 1987
Last modified: January 31, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Plasmid