Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S17

Gene

Rps17

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S17
Gene namesi
Name:Rps17
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi62027. Rps17.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 13513440S ribosomal protein S17PRO_0000141528Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei19 – 191N6-succinyllysineBy similarity
Cross-linki103 – 103Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)By similarity
Modified residuei113 – 1131PhosphoserineBy similarity
Modified residuei130 – 1301PhosphothreonineBy similarity

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP04644.
PRIDEiP04644.

PTM databases

iPTMnetiP04644.
PhosphoSiteiP04644.

Expressioni

Gene expression databases

BgeeiENSRNOG00000019106.
GenevisibleiP04644. RN.

Interactioni

Protein-protein interaction databases

BioGridi247956. 1 interaction.
IntActiP04644. 1 interaction.
STRINGi10116.ENSRNOP00000064320.

Structurei

3D structure databases

ProteinModelPortaliP04644.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17e family.Curated

Phylogenomic databases

eggNOGiKOG0187. Eukaryota.
COG1383. LUCA.
GeneTreeiENSGT00390000006548.
HOGENOMiHOG000227166.
HOVERGENiHBG001708.
InParanoidiP04644.
KOiK02962.
OMAiYTTHLMR.
OrthoDBiEOG091G0TNU.
PhylomeDBiP04644.
TreeFamiTF317992.

Family and domain databases

Gene3Di1.10.60.20. 1 hit.
HAMAPiMF_00511. Ribosomal_S17e. 1 hit.
InterProiIPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
[Graphical view]
PANTHERiPTHR10732. PTHR10732. 1 hit.
PfamiPF00833. Ribosomal_S17e. 1 hit.
[Graphical view]
SUPFAMiSSF116820. SSF116820. 1 hit.
PROSITEiPS00712. RIBOSOMAL_S17E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P04644-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRVRTKTVK KAARVIIEKY YTRLGNDFHT NKRVCEEIAI IPSKNLRNKI
60 70 80 90 100
AGYVTHLMKR IQRGPVRGIS IKLQEEERER RDNYVPEVSA LDQEIIEVDP
110 120 130
DTKEMLKLLD FGSLSNLQVT QPTVGMNFKT PRGAV
Length:135
Mass (Da):15,510
Last modified:January 23, 2007 - v3
Checksum:i59F06350C0104620
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti36 – 361E → K in AAA42078 (PubMed:3840111).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K02933 mRNA. Translation: AAA42078.1.
BC058484 mRNA. Translation: AAH58484.1.
PIRiA24028. R4RT17.
RefSeqiNP_058848.2. NM_017152.3.
XP_006226597.1. XM_006226535.2.
XP_006243666.1. XM_006243604.2.
UniGeneiRn.6920.

Genome annotation databases

EnsembliENSRNOT00000073068; ENSRNOP00000064320; ENSRNOG00000045885.
GeneIDi100365810.
29286.
KEGGirno:100365810.
rno:29286.
UCSCiRGD:62027. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K02933 mRNA. Translation: AAA42078.1.
BC058484 mRNA. Translation: AAH58484.1.
PIRiA24028. R4RT17.
RefSeqiNP_058848.2. NM_017152.3.
XP_006226597.1. XM_006226535.2.
XP_006243666.1. XM_006243604.2.
UniGeneiRn.6920.

3D structure databases

ProteinModelPortaliP04644.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi247956. 1 interaction.
IntActiP04644. 1 interaction.
STRINGi10116.ENSRNOP00000064320.

PTM databases

iPTMnetiP04644.
PhosphoSiteiP04644.

Proteomic databases

PaxDbiP04644.
PRIDEiP04644.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000073068; ENSRNOP00000064320; ENSRNOG00000045885.
GeneIDi100365810.
29286.
KEGGirno:100365810.
rno:29286.
UCSCiRGD:62027. rat.

Organism-specific databases

CTDi6218.
RGDi62027. Rps17.

Phylogenomic databases

eggNOGiKOG0187. Eukaryota.
COG1383. LUCA.
GeneTreeiENSGT00390000006548.
HOGENOMiHOG000227166.
HOVERGENiHBG001708.
InParanoidiP04644.
KOiK02962.
OMAiYTTHLMR.
OrthoDBiEOG091G0TNU.
PhylomeDBiP04644.
TreeFamiTF317992.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP04644.

Gene expression databases

BgeeiENSRNOG00000019106.
GenevisibleiP04644. RN.

Family and domain databases

Gene3Di1.10.60.20. 1 hit.
HAMAPiMF_00511. Ribosomal_S17e. 1 hit.
InterProiIPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
[Graphical view]
PANTHERiPTHR10732. PTHR10732. 1 hit.
PfamiPF00833. Ribosomal_S17e. 1 hit.
[Graphical view]
SUPFAMiSSF116820. SSF116820. 1 hit.
PROSITEiPS00712. RIBOSOMAL_S17E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS17_RAT
AccessioniPrimary (citable) accession number: P04644
Secondary accession number(s): Q6PDV2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 1987
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 113 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.