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Protein

Glycinin

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glycinin is the major seed storage protein of soybean.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Protein family/group databases

TCDBi1.C.121.1.2. the soybean glycinin-derived pore-forming peptide (sgpp) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycinin
Cleaved into the following 2 chains:
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Vacuole

Pathology & Biotechi

Protein family/group databases

Allergomei5821. Gly m 6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Add BLAST24
ChainiPRO_000003202325 – 344Glycinin A3 subunitAdd BLAST320
ChainiPRO_0000032024345 – 516Glycinin B4 subunitAdd BLAST172

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi33 ↔ 661 Publication
Disulfide bondi109 ↔ 351Interchain (between A3 and B4 chains)1 Publication

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiP04347.

Interactioni

Subunit structurei

Hexamer; each subunit is composed of an acidic and a basic chain derived from a single precursor and linked by a disulfide bond.1 Publication

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Structurei

Secondary structure

1516
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi45 – 49Combined sources5
Beta strandi52 – 56Combined sources5
Helixi62 – 67Combined sources6
Beta strandi70 – 76Combined sources7
Beta strandi80 – 86Combined sources7
Beta strandi91 – 97Combined sources7
Beta strandi99 – 104Combined sources6
Beta strandi113 – 115Combined sources3
Beta strandi133 – 136Combined sources4
Beta strandi138 – 142Combined sources5
Beta strandi145 – 149Combined sources5
Beta strandi155 – 159Combined sources5
Beta strandi161 – 163Combined sources3
Beta strandi165 – 171Combined sources7
Beta strandi187 – 191Combined sources5
Turni198 – 201Combined sources4
Turni228 – 231Combined sources4
Helixi234 – 240Combined sources7
Helixi245 – 250Combined sources6
Beta strandi260 – 263Combined sources4
Helixi350 – 352Combined sources3
Beta strandi356 – 358Combined sources3
Helixi362 – 364Combined sources3
Beta strandi366 – 369Combined sources4
Turni370 – 372Combined sources3
Beta strandi373 – 379Combined sources7
Turni380 – 382Combined sources3
Helixi386 – 389Combined sources4
Beta strandi392 – 398Combined sources7
Beta strandi403 – 411Combined sources9
Beta strandi414 – 427Combined sources14
Beta strandi433 – 440Combined sources8
Beta strandi444 – 447Combined sources4
Beta strandi452 – 470Combined sources19
Beta strandi475 – 477Combined sources3
Helixi478 – 484Combined sources7
Helixi487 – 494Combined sources8
Helixi498 – 506Combined sources9
Beta strandi510 – 514Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-516[»]
ProteinModelPortaliP04347.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP04347.

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi117 – 136Gln-richAdd BLAST20
Compositional biasi202 – 231Gln-richAdd BLAST30

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P04347-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPFFTLSL SSLCLLLLSS ACFAITSSKF NECQLNNLNA LEPDHRVESE
60 70 80 90 100
GGLIETWNSQ HPELQCAGVT VSKRTLNRNG SHLPSYLPYP QMIIVVQGKG
110 120 130 140 150
AIGFAFPGCP ETFEKPQQQS SRRGSRSQQQ LQDSHQKIRH FNEGDVLVIP
160 170 180 190 200
LGVPYWTYNT GDEPVVAISP LDTSNFNNQL DQNPRVFYLA GNPDIEHPET
210 220 230 240 250
MQQQQQQKSH GGRKQGQHRQ QEEEGGSVLS GFSKHFLAQS FNTNEDTAEK
260 270 280 290 300
LRSPDDERKQ IVTVEGGLSV ISPKWQEQED EDEDEDEEYG RTPSYPPRRP
310 320 330 340 350
SHGKHEDDED EDEEEDQPRP DHPPQRPSRP EQQEPRGRGC QTRNGVEENI
360 370 380 390 400
CTMKLHENIA RPSRADFYNP KAGRISTLNS LTLPALRQFG LSAQYVVLYR
410 420 430 440 450
NGIYSPDWNL NANSVTMTRG KGRVRVVNCQ GNAVFDGELR RGQLLVVPQN
460 470 480 490 500
PAVAEQGGEQ GLEYVVFKTH HNAVSSYIKD VFRVIPSEVL SNSYNLGQSQ
510
VRQLKYQGNS GPLVNP
Length:516
Mass (Da):57,956
Last modified:March 20, 1987 - v1
Checksum:iFE464753A8D20715
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10962 mRNA. Translation: AAA33964.1.
PIRiA92524. FWSYG3.
UniGeneiGma.30723.
Gma.32300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10962 mRNA. Translation: AAA33964.1.
PIRiA92524. FWSYG3.
UniGeneiGma.30723.
Gma.32300.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-516[»]
ProteinModelPortaliP04347.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Protein family/group databases

Allergomei5821. Gly m 6.
TCDBi1.C.121.1.2. the soybean glycinin-derived pore-forming peptide (sgpp) family.

Proteomic databases

PRIDEiP04347.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Miscellaneous databases

EvolutionaryTraceiP04347.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLYG5_SOYBN
AccessioniPrimary (citable) accession number: P04347
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 1987
Last sequence update: March 20, 1987
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.