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Protein

Glycinin

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glycinin is the major seed storage protein of soybean.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Names & Taxonomyi

Protein namesi
Recommended name:
Glycinin
Cleaved into the following 2 chains:
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Vacuole

Pathology & Biotechi

Protein family/group databases

Allergomei5821. Gly m 6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Add
BLAST
Chaini25 – 344320Glycinin A3 subunitPRO_0000032023Add
BLAST
Chaini345 – 516172Glycinin B4 subunitPRO_0000032024Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi33 ↔ 661 Publication
Disulfide bondi109 ↔ 351Interchain (between A3 and B4 chains)1 Publication

Keywords - PTMi

Disulfide bond

Interactioni

Subunit structurei

Hexamer; each subunit is composed of an acidic and a basic chain derived from a single precursor and linked by a disulfide bond.1 Publication

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Structurei

Secondary structure

1
516
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi45 – 495Combined sources
Beta strandi52 – 565Combined sources
Helixi62 – 676Combined sources
Beta strandi70 – 767Combined sources
Beta strandi80 – 867Combined sources
Beta strandi91 – 977Combined sources
Beta strandi99 – 1046Combined sources
Beta strandi113 – 1153Combined sources
Beta strandi133 – 1364Combined sources
Beta strandi138 – 1425Combined sources
Beta strandi145 – 1495Combined sources
Beta strandi155 – 1595Combined sources
Beta strandi161 – 1633Combined sources
Beta strandi165 – 1717Combined sources
Beta strandi187 – 1915Combined sources
Turni198 – 2014Combined sources
Turni228 – 2314Combined sources
Helixi234 – 2407Combined sources
Helixi245 – 2506Combined sources
Beta strandi260 – 2634Combined sources
Helixi350 – 3523Combined sources
Beta strandi356 – 3583Combined sources
Helixi362 – 3643Combined sources
Beta strandi366 – 3694Combined sources
Turni370 – 3723Combined sources
Beta strandi373 – 3797Combined sources
Turni380 – 3823Combined sources
Helixi386 – 3894Combined sources
Beta strandi392 – 3987Combined sources
Beta strandi403 – 4119Combined sources
Beta strandi414 – 42714Combined sources
Beta strandi433 – 4408Combined sources
Beta strandi444 – 4474Combined sources
Beta strandi452 – 47019Combined sources
Beta strandi475 – 4773Combined sources
Helixi478 – 4847Combined sources
Helixi487 – 4948Combined sources
Helixi498 – 5069Combined sources
Beta strandi510 – 5145Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-516[»]
ProteinModelPortaliP04347.
SMRiP04347. Positions 31-516.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP04347.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi117 – 13620Gln-richAdd
BLAST
Compositional biasi202 – 23130Gln-richAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P04347-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPFFTLSL SSLCLLLLSS ACFAITSSKF NECQLNNLNA LEPDHRVESE
60 70 80 90 100
GGLIETWNSQ HPELQCAGVT VSKRTLNRNG SHLPSYLPYP QMIIVVQGKG
110 120 130 140 150
AIGFAFPGCP ETFEKPQQQS SRRGSRSQQQ LQDSHQKIRH FNEGDVLVIP
160 170 180 190 200
LGVPYWTYNT GDEPVVAISP LDTSNFNNQL DQNPRVFYLA GNPDIEHPET
210 220 230 240 250
MQQQQQQKSH GGRKQGQHRQ QEEEGGSVLS GFSKHFLAQS FNTNEDTAEK
260 270 280 290 300
LRSPDDERKQ IVTVEGGLSV ISPKWQEQED EDEDEDEEYG RTPSYPPRRP
310 320 330 340 350
SHGKHEDDED EDEEEDQPRP DHPPQRPSRP EQQEPRGRGC QTRNGVEENI
360 370 380 390 400
CTMKLHENIA RPSRADFYNP KAGRISTLNS LTLPALRQFG LSAQYVVLYR
410 420 430 440 450
NGIYSPDWNL NANSVTMTRG KGRVRVVNCQ GNAVFDGELR RGQLLVVPQN
460 470 480 490 500
PAVAEQGGEQ GLEYVVFKTH HNAVSSYIKD VFRVIPSEVL SNSYNLGQSQ
510
VRQLKYQGNS GPLVNP
Length:516
Mass (Da):57,956
Last modified:March 20, 1987 - v1
Checksum:iFE464753A8D20715
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10962 mRNA. Translation: AAA33964.1.
PIRiA92524. FWSYG3.
UniGeneiGma.30723.
Gma.32300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M10962 mRNA. Translation: AAA33964.1.
PIRiA92524. FWSYG3.
UniGeneiGma.30723.
Gma.32300.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-516[»]
ProteinModelPortaliP04347.
SMRiP04347. Positions 31-516.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Protein family/group databases

Allergomei5821. Gly m 6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Miscellaneous databases

EvolutionaryTraceiP04347.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLYG5_SOYBN
AccessioniPrimary (citable) accession number: P04347
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 1987
Last sequence update: March 20, 1987
Last modified: March 16, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.