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P04332 (VG10_BPPH2) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Upper collar protein
Alternative name(s):
Connector protein
Late protein GP10
Gene names
Name:10
OrganismBacillus phage phi29 (Bacteriophage phi-29)
Taxonomic identifier10756 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stageCaudoviralesPodoviridaePicovirinaePhi29likevirus
Virus hostBacillus subtilis [TaxID: 1423]

Protein attributes

Sequence length309 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein is located between the head and the tail of this bacteriophage.

Ontologies

Keywords
   Developmental stageLate protein
   Technical term3D-structure
Gene Ontology (GO)
   Cellular_componentviral procapsid

Inferred from direct assay PubMed 22225806. Source: CACAO

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 309309Upper collar protein
PRO_0000106586

Secondary structure

........................................... 309
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P04332 [UniParc].

Last modified March 20, 1987. Version 1.
Checksum: F5B01C1BE17FDE60

FASTA30935,878
        10         20         30         40         50         60 
MARKRSNTYR SINEIQRQKR NRWFIHYLNY LQSLAYQLFE WENLPPTINP SFLEKSIHQF 

        70         80         90        100        110        120 
GYVGFYKDPV ISYIACNGAL SGQRDVYNQA TVFRAASPVY QKEFKLYNYR DMKEEDMGVV 

       130        140        150        160        170        180 
IYNNDMAFPT TPTLELFAAE LAELKEIISV NQNAQKTPVL IRANDNNQLS LKQVYNQYEG 

       190        200        210        220        230        240 
NAPVIFAHEA LDSDSIEVFK TDAPYVVDKL NAQKNAVWNE MMTFLGIKNA NLEKKERMVT 

       250        260        270        280        290        300 
DEVSSNDEQI ESSGTVFLKS REEACEKINE LYGLNVKVKF RYDIVEQMRR ELQQIENVSR 


GTSDGETNE 

« Hide

References

[1]"Nucleotide sequence of the late region of Bacillus phage phi 29 completes the 19,285-bp sequence of phi 29 genome. Comparison with the homologous sequence of phage PZA."
Vlcek C., Paces V.
Gene 46:215-225(1986) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Cloning, nucleotide sequence and high level expression of the gene coding for the connector protein of Bacillus subtilis phage phi 29."
Garcia J.A., Mendez E., Salas M.
Gene 30:87-98(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M14782 Genomic DNA. Translation: AAA32283.1.
M12456 Genomic DNA. Translation: AAA32292.1.
PIRWMBPC9. E25816.
RefSeqYP_002004539.1. NC_011048.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1FOUX-ray3.20A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1H5WX-ray2.10A/B/C1-309[»]
1IJGX-ray2.90A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1JNBX-ray3.20A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1L4Pmodel-G/H/I/J/K/L/M/N/O/P/Q/R1-309[»]
1VRImodel-1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-309[»]
1VRJmodel-A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j1-309[»]
1YWEmodel-1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-309[»]
ProteinModelPortalP04332.
SMRP04332. Positions 11-285.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6446518.

Phylogenomic databases

ProtClustDBPHA0147.

Family and domain databases

InterProIPR008016. Phage_phi-29_Gp10.
[Graphical view]
PfamPF05352. Phage_connector. 1 hit.
[Graphical view]
ProDomPD017810. Upper_collar_prot_phg. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF56826. SSF56826. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP04332.

Entry information

Entry nameVG10_BPPH2
AccessionPrimary (citable) accession number: P04332
Entry history
Integrated into UniProtKB/Swiss-Prot: March 20, 1987
Last sequence update: March 20, 1987
Last modified: November 13, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references