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P04332

- VG10_BPPH2

UniProt

P04332 - VG10_BPPH2

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Protein

Upper collar protein

Gene
10
Organism
Bacillus phage phi29 (Bacteriophage phi-29)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

This protein is located between the head and the tail of this bacteriophage.

Names & Taxonomyi

Protein namesi
Recommended name:
Upper collar protein
Alternative name(s):
Connector protein
Late protein GP10
Gene namesi
Name:10
OrganismiBacillus phage phi29 (Bacteriophage phi-29)
Taxonomic identifieri10756 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesPodoviridaePicovirinaePhi29likevirus
Virus hostiBacillus subtilis [TaxID: 1423]

Subcellular locationi

GO - Cellular componenti

  1. viral procapsid Source: CACAO
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 309309Upper collar proteinPRO_0000106586Add
BLAST

Expressioni

Keywords - Developmental stagei

Late protein

Structurei

Secondary structure

1
309
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 163
Helixi18 – 3619
Beta strandi38 – 436
Helixi50 – 6011
Beta strandi61 – 688
Turni69 – 713
Beta strandi72 – 765
Beta strandi78 – 825
Beta strandi86 – 883
Beta strandi92 – 965
Beta strandi97 – 993
Beta strandi101 – 1066
Beta strandi110 – 1123
Beta strandi118 – 1247
Helixi131 – 15424
Beta strandi159 – 1635
Beta strandi167 – 1693
Helixi171 – 1766
Beta strandi180 – 1834
Beta strandi195 – 2006
Helixi207 – 22418
Helixi247 – 27226
Beta strandi277 – 2815

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FOUX-ray3.20A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1H5WX-ray2.10A/B/C1-309[»]
1IJGX-ray2.90A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1JNBX-ray3.20A/B/C/D/E/F/G/H/I/J/K/L1-309[»]
1L4Pmodel-G/H/I/J/K/L/M/N/O/P/Q/R1-309[»]
1VRImodel-1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-309[»]
1VRJmodel-A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j1-309[»]
1YWEmodel-1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-309[»]
ProteinModelPortaliP04332.
SMRiP04332. Positions 11-285.

Miscellaneous databases

EvolutionaryTraceiP04332.

Family & Domainsi

Family and domain databases

InterProiIPR008016. Phage_phi-29_Gp10.
[Graphical view]
PfamiPF05352. Phage_connector. 1 hit.
[Graphical view]
ProDomiPD017810. Upper_collar_prot_phg. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF56826. SSF56826. 1 hit.

Sequencei

Sequence statusi: Complete.

P04332-1 [UniParc]FASTAAdd to Basket

« Hide

MARKRSNTYR SINEIQRQKR NRWFIHYLNY LQSLAYQLFE WENLPPTINP    50
SFLEKSIHQF GYVGFYKDPV ISYIACNGAL SGQRDVYNQA TVFRAASPVY 100
QKEFKLYNYR DMKEEDMGVV IYNNDMAFPT TPTLELFAAE LAELKEIISV 150
NQNAQKTPVL IRANDNNQLS LKQVYNQYEG NAPVIFAHEA LDSDSIEVFK 200
TDAPYVVDKL NAQKNAVWNE MMTFLGIKNA NLEKKERMVT DEVSSNDEQI 250
ESSGTVFLKS REEACEKINE LYGLNVKVKF RYDIVEQMRR ELQQIENVSR 300
GTSDGETNE 309
Length:309
Mass (Da):35,878
Last modified:March 20, 1987 - v1
Checksum:iF5B01C1BE17FDE60
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M14782 Genomic DNA. Translation: AAA32283.1.
M12456 Genomic DNA. Translation: AAA32292.1.
PIRiE25816. WMBPC9.
RefSeqiYP_002004539.1. NC_011048.1.

Genome annotation databases

GeneIDi6446518.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M14782 Genomic DNA. Translation: AAA32283.1 .
M12456 Genomic DNA. Translation: AAA32292.1 .
PIRi E25816. WMBPC9.
RefSeqi YP_002004539.1. NC_011048.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1FOU X-ray 3.20 A/B/C/D/E/F/G/H/I/J/K/L 1-309 [» ]
1H5W X-ray 2.10 A/B/C 1-309 [» ]
1IJG X-ray 2.90 A/B/C/D/E/F/G/H/I/J/K/L 1-309 [» ]
1JNB X-ray 3.20 A/B/C/D/E/F/G/H/I/J/K/L 1-309 [» ]
1L4P model - G/H/I/J/K/L/M/N/O/P/Q/R 1-309 [» ]
1VRI model - 1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z 1-309 [» ]
1VRJ model - A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j 1-309 [» ]
1YWE model - 1/2/3/4/5/6/7/8/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z 1-309 [» ]
ProteinModelPortali P04332.
SMRi P04332. Positions 11-285.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 6446518.

Miscellaneous databases

EvolutionaryTracei P04332.

Family and domain databases

InterProi IPR008016. Phage_phi-29_Gp10.
[Graphical view ]
Pfami PF05352. Phage_connector. 1 hit.
[Graphical view ]
ProDomi PD017810. Upper_collar_prot_phg. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF56826. SSF56826. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence of the late region of Bacillus phage phi 29 completes the 19,285-bp sequence of phi 29 genome. Comparison with the homologous sequence of phage PZA."
    Vlcek C., Paces V.
    Gene 46:215-225(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Cloning, nucleotide sequence and high level expression of the gene coding for the connector protein of Bacillus subtilis phage phi 29."
    Garcia J.A., Mendez E., Salas M.
    Gene 30:87-98(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiVG10_BPPH2
AccessioniPrimary (citable) accession number: P04332
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 1987
Last sequence update: March 20, 1987
Last modified: May 14, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

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