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P04258

- CO3A1_BOVIN

UniProt

P04258 - CO3A1_BOVIN

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Protein

Collagen alpha-1(III) chain

Gene
COL3A1
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Collagen type III occurs in most soft connective tissues along with type I collagen. Involved in regulation of cortical development. Is the major ligand of GPR56 in the developing brain and binding to GPR56 inhibits neuronal migration and activates the RhoA pathway by coupling GPR56 to GNA13 and possibly GNA12 By similarity.

GO - Biological processi

  1. cerebral cortex development Source: UniProtKB
  2. negative regulation of neuron migration Source: UniProtKB
  3. positive regulation of Rho protein signal transduction Source: UniProtKB
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_209041. Scavenging by Class A Receptors.
REACT_222217. ECM proteoglycans.

Names & Taxonomyi

Protein namesi
Recommended name:
Collagen alpha-1(III) chain
Gene namesi
Name:COL3A1
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Unplaced

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
  2. extracellular region Source: Reactome
  3. proteinaceous extracellular matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Extracellular matrix, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10491049Collagen alpha-1(III) chainPRO_0000059398Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei95 – 9515-hydroxylysine2 Publications
Modified residuei107 – 10715-hydroxylysine2 Publications
Glycosylationi107 – 1071O-linked (Gal...)1 Publication
Modified residuei119 – 11915-hydroxylysine2 Publications
Modified residuei938 – 93815-hydroxylysine2 Publications
Modified residuei950 – 95015-hydroxylysine2 Publications
Glycosylationi950 – 9501O-linked (Gal...)
Disulfide bondi1040 – 1040Interchain
Disulfide bondi1041 – 1041Interchain

Post-translational modificationi

Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.

Keywords - PTMi

Disulfide bond, Glycoprotein, Hydroxylation

Proteomic databases

PaxDbiP04258.
PRIDEiP04258.

Interactioni

Subunit structurei

Trimers of identical alpha 1(III) chains. The chains are linked to each other by interchain disulfide bonds. Trimers are also cross-linked via hydroxylysines.

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000028617.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 1414Nonhelical region (N-terminal)Add
BLAST
Regioni15 – 10401026Triple-helical regionAdd
BLAST
Regioni1041 – 10499Nonhelical region (C-terminal)

Sequence similaritiesi

Keywords - Domaini

Collagen, Repeat

Phylogenomic databases

eggNOGiNOG12793.
HOGENOMiHOG000085654.
HOVERGENiHBG004933.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P04258-1 [UniParc]FASTAAdd to Basket

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EYEAYDVKSG VAGGGIAGYP GPAGPPGPPG PPGTSGHPGA PGAPGYQGPP     50
GEPGQAGPAG PPGPPGAIGP SGKDGESGRP GRPGPRGFPG PPGMKGPAGM 100
PGFPGMKGHR GFDGRNGEKG EPGAPGLKGE NGVPGEDGAP GPMGPRGAPG 150
ERGRPGLPGA AGARGNDGAR GSDGQPGPPG PPGTAGFPGS PGAKGEVGPA 200
GSPGSSGAPG QRGEPGPQGH AGAPGPPGPP GSDGSPGGKG EMGPAGIPGA 250
PGLIGARGPP GPPGTNGVPG QRGAAGEPGK NGAKGDPGPR GERGEAGSPG 300
IAGPKGEDGK DGSPGEPGAN GLPGAAGERG VPGFRGPAGA NGLPGEKGPP 350
GDRGGPGPAG PRGVAGEPGR NGLPGGPGLR GIPGSPGGPG SNGKPGPPGS 400
QGETGRPGPP GSPGPRGQPG VMGFPGPKGN DGAPGKNGER GGPGGPGPQG 450
PAGKNGETGP QGPPGPTGPS GDKGDTGPPG PQGLQGLPGT SGPPGENGKP 500
GEPGPKGEAG APGIPGGKGD SGAPGERGPP GAGGPPGPRG GAGPPGPEGG 550
KGAAGPPGPP GSAGTPGLQG MPGERGGPGG PGPKGDKGEP GSSGVDGAPG 600
KDGPRGPTGP IGPPGPAGQP GDKGESGAPG VPGIAGPRGG PGERGEQGPP 650
GPAGFPGAPG QNGEPGAKGE RGAPGEKGEG GPPGAAGPAG GSGPAGPPGP 700
QGVKGERGSP GGPGAAGFPG GRGPPGPPGS NGNPGPPGSS GAPGKDGPPG 750
PPGSNGAPGS PGISGPKGDS GPPGERGAPG PQGPPGAPGP LGIAGLTGAR 800
GLAGPPGMPG ARGSPGPQGI KGENGKPGPS GQNGERGPPG PQGLPGLAGT 850
AGEPGRDGNP GSDGLPGRDG APGAKGDRGE NGSPGAPGAP GHPGPPGPVG 900
PAGKSGDRGE TGPAGPSGAP GPAGSRGPPG PQGPRGDKGE TGERGAMGIK 950
GHRGFPGNPG APGSPGPAGH QGAVGSPGPA GPRGPVGPSG PPGKDGASGH 1000
PGPIGPPGPR GNRGERGSEG SPGHPGQPGP PGPPGAPGPC CGAGGVAAI 1049
Length:1,049
Mass (Da):93,651
Last modified:March 20, 1987 - v1
Checksum:i8EEC33D1C66EC9A3
GO

Sequence databases

PIRiA02862. CGBO7S.
UniGeneiBt.64714.

Cross-referencesi

Sequence databases

PIRi A02862. CGBO7S.
UniGenei Bt.64714.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9913.ENSBTAP00000028617.

Proteomic databases

PaxDbi P04258.
PRIDEi P04258.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Phylogenomic databases

eggNOGi NOG12793.
HOGENOMi HOG000085654.
HOVERGENi HBG004933.

Enzyme and pathway databases

Reactomei REACT_209041. Scavenging by Class A Receptors.
REACT_222217. ECM proteoglycans.

Family and domain databases

InterProi IPR008160. Collagen.
[Graphical view ]
Pfami PF01391. Collagen. 7 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The covalent structure of calf skin type III collagen. I. The amino acid sequence of the amino terminal region of the alpha 1(III) chain (positions 1-222)."
    Fietzek P.P., Allmann H., Rauterberg J., Henkel W., Wachter E., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:809-820(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-242, HYDROXYLATION.
  2. "The covalent structure of calf skin type III collagen. II. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB1,8,10,2 (positions 223-402)."
    Dewes H., Fietzek P.P., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:821-832(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 243-422.
  3. "The covalent structure of calf skin type III collagen. III. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB4 (positions 403-551)."
    Bentz H., Fietzek P.P., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:833-840(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 423-571.
  4. "The covalent structure of calf skin type III collagen. IV. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB5 (positions 552-788)."
    Lang H., Glanville R.W., Fietzek P.P., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:841-850(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 572-808.
  5. "The covalent structure of calf skin type III collagen. V. The amino acid sequence of the cyanogen bromide peptide alpha 1(III)CB9A (position 789-927)."
    Dewes H., Fietzek P.P., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:851-860(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 809-947, HYDROXYLATION.
  6. "The covalent structure of calf skin type III collagen. VI. The amino acid sequence of the carboxyterminal cyanogen bromide peptide alpha 1(III)CB9B (positions 928-1028)."
    Allmann H., Fietzek P.P., Glanville R.W., Kuhn K.
    Hoppe-Seyler's Z. Physiol. Chem. 360:861-868(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 948-1049, HYDROXYLATION.

Entry informationi

Entry nameiCO3A1_BOVIN
AccessioniPrimary (citable) accession number: P04258
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 1987
Last sequence update: March 20, 1987
Last modified: September 3, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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