P04066 (FUCO_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 143.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Tissue alpha-L-fucosidase EC=3.2.1.51 Alternative name(s): Alpha-L-fucosidase I Alpha-L-fucoside fucohydrolase 1 Short name=Alpha-L-fucosidase 1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 466 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. |
| Catalytic activity | An alpha-L-fucoside + H2O = L-fucose + an alcohol. |
| Subunit structure | Homotetramer. |
| Subcellular location | |
| Polymorphism | There are two common alleles of FUCA1; FUCA1*1; also known as Fu1; has Arg-281 and FUCA1*2; also known as Fu2; has Gln-281. |
| Involvement in disease | Fucosidosis (FUCA1D) [MIM:230000]: An autosomal recessive lysosomal storage disease characterized by accumulation of fucose-containing glycolipids and glycoproteins in various tissues. Clinical signs include facial dysmorphism, dysostosis multiplex, moderate hepatomegaly, severe intellectual deficit, deafness, and according to age, angiokeratomas. |
| Sequence similarities | Belongs to the glycosyl hydrolase 29 family. |
| Sequence caution | The sequence AAA35519.1 differs from that shown. Reason: Erroneous initiation. The sequence AAA52481.1 differs from that shown. Reason: Erroneous initiation. The sequence AAH17338.1 differs from that shown. Reason: Erroneous initiation. The sequence CAA25646.1 differs from that shown. Reason: Translation of X01390 sequence produces a larger peptide than that shown in CAA25646.1. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Lysosome |
| Coding sequence diversity | Polymorphism |
| Disease | Disease mutation |
| Domain | Signal |
| Molecular function | Glycosidase Hydrolase |
| PTM | Glycoprotein Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | fucose metabolic process Inferred from electronic annotation. Source: InterPro glycosaminoglycan catabolic processNon-traceable author statement PubMed 11698403. Source: UniProtKB |
| Cellular_component | cytoplasm Inferred by curator PubMed 11698403. Source: UniProtKB lysosomeInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | alpha-L-fucosidase activity Traceable author statement PubMed 11698403. Source: UniProtKB carbohydrate bindingInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 31 | 31 | Potential | ||||||
| Chain | 32 – 466 | 435 | Tissue alpha-L-fucosidase | PRO_0000010308 | |||||
Sites | |||||||||
| Site | 296 | 1 | May be important for catalysis | ||||||
Amino acid modifications | |||||||||
| Modified residue | 170 | 1 | Phosphothreonine Ref.14 | ||||||
| Glycosylation | 241 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
| Glycosylation | 268 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 382 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
Natural variations | |||||||||
| Natural variant | 2 | 1 | R → W. Corresponds to variant rs2070955 [ dbSNP | Ensembl ]. | VAR_049106 | |||||
| Natural variant | 10 | 1 | P → R. Corresponds to variant rs2070956 [ dbSNP | Ensembl ]. | VAR_016233 | |||||
| Natural variant | 65 | 1 | G → D in FUCA1D; loss of activity. Ref.1 | VAR_002442 | |||||
| Natural variant | 68 | 1 | S → L in FUCA1D. Ref.16 | VAR_002443 | |||||
| Natural variant | 146 | 1 | P → L. Corresponds to variant rs2228424 [ dbSNP | Ensembl ]. | VAR_049107 | |||||
| Natural variant | 260 | 1 | V → I. Corresponds to variant rs665 [ dbSNP | Ensembl ]. | VAR_049108 | |||||
| Natural variant | 269 | 1 | C → S. Ref.6 Ref.10 Ref.20 Corresponds to variant rs1126512 [ dbSNP | Ensembl ]. | VAR_016234 | |||||
| Natural variant | 286 | 1 | Q → R in allele FUCA1*2. Ref.1 Ref.15 Ref.17 Ref.20 Corresponds to variant rs13551 [ dbSNP | Ensembl ]. | VAR_002444 | |||||
| Natural variant | 410 | 1 | L → R in FUCA1D; less than 1% of residual activity. Ref.18 | VAR_016235 | |||||
Experimental info | |||||||||
| Sequence conflict | 54 – 56 | 3 | DEA → NEV in BAC04002. Ref.3 | ||||||
| Sequence conflict | 74 | 1 | S → T no nucleotide entry Ref.7 | ||||||
| Sequence conflict | 76 – 77 | 2 | WF → FL in AAA52482. Ref.8 | ||||||
| Sequence conflict | 76 – 77 | 2 | WF → FL in CAA25646. Ref.9 | ||||||
| Sequence conflict | 93 – 114 | 22 | Missing in BAC04002. Ref.3 | ||||||
| Sequence conflict | 127 | 1 | A → T in BAC04002. Ref.3 | ||||||
| Sequence conflict | 171 | 1 | A → G in BAC04002. Ref.3 | ||||||
| Sequence conflict | 244 | 1 | N → D in BAC04002. Ref.3 | ||||||
| Sequence conflict | 427 | 1 | Q → P in AAA52482. Ref.8 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Fucosidosis: four new mutations and a new polymorphism." Seo H.-C., Willems P.J., Kretz K.A., Martin B.M., O'Brien J.S. Hum. Mol. Genet. 2:423-429(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT FUCA1D ASP-65, VARIANT ARG-286. |
| [2] | "Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma." Ohira M., Morohashi A., Nakamura Y., Isogai E., Furuya K., Hamano S., Machida T., Aoyama M., Fukumura M., Miyazaki K., Suzuki Y., Sugano S., Hirato J., Nakagawara A. Cancer Lett. 197:63-68(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Neuroblastoma. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Spleen. |
| [4] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Skin. |
| [6] | "Human alpha-L-fucosidase: complete coding sequence from cDNA clones." Occhiodoro T., Beckmann K.R., Morris C.P., Hopwood J.J. Biochem. Biophys. Res. Commun. 164:439-445(1989) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 2-466, VARIANT SER-269. |
| [7] | "Sequencing and expression of a full-length cDNA for human alpha-L-fucosidase." Fukushima H., Nishimoto J., Okada S. J. Inherit. Metab. Dis. 13:761-765(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 3-92. Tissue: Placenta. |
| [8] | "Molecular cloning of a cDNA for human alpha-L-fucosidase." Fukushima H., de Wet J.R., O'Brien J.S. Proc. Natl. Acad. Sci. U.S.A. 82:1262-1265(1985) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 75-427. |
| [9] | "Chromogenic immunodetection of human serum albumin and alpha-L-fucosidase clones in a human hepatoma cDNA expression library." de Wet J.R., Fukushima H., Dewji N.N., Wilcox E., O'Brien J.S., Helinski D.R. DNA 3:437-447(1984) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 75-426. |
| [10] | "Molecular biology of the alpha-6L-fucosidase gene and fucosidosis." O'Brien J.S., Willems P.J., Fukushima H., de Wet J.R., Darby J.K., Dicioccio R.A., Fowler M.L., Shows T.B. Enzyme 38:45-53(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 75-426, VARIANT SER-269. |
| [11] | "Structural analysis of the carbohydrate moieties of alpha-L-fucosidase from human liver." Beem E.P., Lisman J.J.W., van Steijn G.J., van der Wal C.J., Trippelvitz L.A.W., Overdijk B., van Halbeek H., Mutsaers J.H.G.M., Vliegenthart J.F.G. Glycoconj. J. 4:33-42(1987) Cited for: STRUCTURE OF CARBOHYDRATES. |
| [12] | "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry." Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H. J. Proteome Res. 8:651-661(2009) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-241 AND ASN-382, MASS SPECTROMETRY. Tissue: Liver. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-170, MASS SPECTROMETRY. |
| [15] | "Pedigree analysis of alpha-L-fucosidase gene mutations in a fucosidosis family." Yang M., Allen H., Dicioccio R.A. Biochim. Biophys. Acta 1182:245-249(1993) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT ARG-286. |
| [16] | "A missense mutation (S63L) in alpha-L-fucosidase is responsible for fucosidosis in an Italian patient." Seo H.-C., Yang M., Tonlorenzi R., Willems P.J., Kim A.H., Filocamo M., Gatti R., Dicioccio R.A., O'Brien J.S. Hum. Mol. Genet. 3:2065-2066(1994) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT FUCA1D LEU-68. |
| [17] | "Molecular basis of the common electrophoretic polymorphism (Fu1/Fu2) in human alpha-L-fucosidase." Cragg H., Winchester B., Seo H.-C., O'Brien J.S., Swallow D. J. Med. Genet. 31:659-660(1994) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT ARG-286. |
| [18] | "A fucosidosis patient with relative longevity and a missense mutation in exon 7 of the alpha-fucosidase gene." Fleming C.J., Sinclair D.U., White E.J., Winchester B., Whiteford M.L., Connor J.M. J. Inherit. Metab. Dis. 21:688-689(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT FUCA1D ARG-410. |
| [19] | "Spectrum of mutations in fucosidosis." Willems P.J., Seo H.-C., Coucke P., Tonlorenzi R., O'Brien J.S. Eur. J. Hum. Genet. 7:60-67(1999) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON VARIANTS. |
| [20] | "A novel FUCA1 mutation causing fucosidosis in a Chinese boy." Ip P., Goh W., Chan K.W., Cheung P.T. J. Inherit. Metab. Dis. 25:415-416(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS SER-269 AND ARG-286. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M80815 M80814 Genomic DNA. Translation: AAA52481.1. Different initiation.AB074175 mRNA. Translation: BAE45738.1. AK092914 mRNA. Translation: BAC04002.1. AL590728 Genomic DNA. Translation: CAH74004.2. BC017338 mRNA. Translation: AAH17338.1. Different initiation. M29877 mRNA. Translation: AAA35519.1. Different initiation. M10355 mRNA. Translation: AAA52482.1. X01390 mRNA. Translation: CAA25646.1. Sequence problems. |
| IPI | IPI00843910. |
| PIR | HWHUFA. A33427. |
| RefSeq | NP_000138.2. NM_000147.4. |
| UniGene | Hs.370858. |
3D structure databases | |
| ProteinModelPortal | P04066. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P04066. 3 interactions. |
| STRING | 9606.ENSP00000363603. |
Protein family/group databases | |
| CAZy | GH29. Glycoside Hydrolase Family 29. |
PTM databases | |
| PhosphoSite | P04066. |
Polymorphism databases | |
| DMDM | 156631012. |
Proteomic databases | |
| PaxDb | P04066. |
| PRIDE | P04066. |
Protocols and materials databases | |
| DNASU | 2517. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000374479; ENSP00000363603; ENSG00000179163. |
| GeneID | 2517. |
| KEGG | hsa:2517. |
| UCSC | uc001bie.3. human. |
Organism-specific databases | |
| CTD | 2517. |
| GeneCards | GC01M024171. |
| HGNC | HGNC:4006. FUCA1. |
| MIM | 230000. phenotype. 612280. gene. |
| neXtProt | NX_P04066. |
| Orphanet | 349. Fucosidosis. |
| PharmGKB | PA28422. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG3669. |
| HOGENOM | HOG000029598. |
| HOVERGEN | HBG002155. |
| InParanoid | P04066. |
| KO | K01206. |
| OMA | DRWGQNC. |
| OrthoDB | EOG4BRWKH. |
Enzyme and pathway databases | |
| BRENDA | 3.2.1.51. 2681. |
| SABIO-RK | P04066. |
Gene expression databases | |
| ArrayExpress | P04066. |
| Bgee | P04066. |
| CleanEx | HS_FUCA1. |
| Genevestigator | P04066. |
| GermOnline | ENSG00000179163. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.60.40.1180. 1 hit. 3.20.20.80. 1 hit. |
| InterPro | IPR013780. Glyco_hydro_13_b. IPR000933. Glyco_hydro_29. IPR018526. Glyco_hydro_29_CS. IPR016286. Glyco_hydro_29_sub. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view] |
| PANTHER | PTHR10030. PTHR10030. 1 hit. |
| Pfam | PF01120. Alpha_L_fucos. 1 hit. [Graphical view] |
| PIRSF | PIRSF001092. Alpha-L-fucosidase. 1 hit. |
| PRINTS | PR00741. GLHYDRLASE29. |
| SMART | SM00812. Alpha_L_fucos. 1 hit. [Graphical view] |
| SUPFAM | SSF51445. Glyco_hydro_cat. 1 hit. |
| PROSITE | PS00385. ALPHA_L_FUCOSIDASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| BindingDB | P04066. |
| ChEMBL | CHEMBL4176. |
| GenomeRNAi | 2517. |
| NextBio | 9913. |
| SOURCE | Search... |
Entry information
| Entry name | FUCO_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P04066 Secondary accession number(s): Q14334 Q8NAC2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Glycosyl hydrolases Classification of glycosyl hydrolase families and list of entries |
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
