ID TERA_PIG Reviewed; 806 AA. AC P03974; DT 23-OCT-1986, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 5. DT 24-JAN-2024, entry version 187. DE RecName: Full=Transitional endoplasmic reticulum ATPase; DE Short=TER ATPase; DE EC=3.6.4.6 {ECO:0000250|UniProtKB:P55072}; DE AltName: Full=15S Mg(2+)-ATPase p97 subunit; DE AltName: Full=Valosin-containing protein; DE Short=VCP; GN Name=VCP; OS Sus scrofa (Pig). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. OX NCBI_TaxID=9823; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RX PubMed=3468358; DOI=10.1038/325542a0; RA Koller K.J., Brownstein M.J.; RT "Use of a cDNA clone to identify a supposed precursor protein containing RT valosin."; RL Nature 325:542-545(1987). RN [2] RP PROTEIN SEQUENCE OF 493-517. RX PubMed=4054310; DOI=10.1016/0014-5793(85)80021-1; RA Schmidt W.E., Mutt V., Carlquist M., Kratzin H., Conlon J.M., RA Creutzfeldt W.; RT "Valosin: isolation and characterization of a novel peptide from porcine RT intestine."; RL FEBS Lett. 191:264-268(1985). RN [3] RP SHOWS THAT VALOSIN IS A PURIFICATION ARTIFACT. RX PubMed=2927256; DOI=10.1016/0024-3205(89)90464-5; RA Gill J.S., Ghatei M.A., Domin J., Bloom S.R.; RT "The generation of valosin-like peptides from a precursor protein in vitro RT as an extraction artifact."; RL Life Sci. 44:483-491(1989). CC -!- FUNCTION: Necessary for the fragmentation of Golgi stacks during CC mitosis and for their reassembly after mitosis. Involved in the CC formation of the transitional endoplasmic reticulum (tER). The transfer CC of membranes from the endoplasmic reticulum to the Golgi apparatus CC occurs via 50-70 nm transition vesicles which derive from part-rough, CC part-smooth transitional elements of the endoplasmic reticulum (tER). CC Vesicle budding from the tER is an ATP-dependent process. The ternary CC complex containing UFD1, VCP and NPLOC4 binds ubiquitinated proteins CC and is necessary for the export of misfolded proteins from the ER to CC the cytoplasm, where they are degraded by the proteasome. The NPLOC4- CC UFD1-VCP complex regulates spindle disassembly at the end of mitosis CC and is necessary for the formation of a closed nuclear envelope. CC Regulates E3 ubiquitin-protein ligase activity of RNF19A. Component of CC the VCP/p97-AMFR/gp78 complex that participates in the final step of CC the sterol-mediated ubiquitination and endoplasmic reticulum-associated CC degradation (ERAD) of HMGCR. Mediates the endoplasmic reticulum- CC associated degradation of CHRNA3 in cortical neurons as part of the CC STUB1-VCP-UBXN2A complex (By similarity). Involved in endoplasmic CC reticulum stress-induced pre-emptive quality control, a mechanism that CC selectively attenuates the translocation of newly synthesized proteins CC into the endoplasmic reticulum and reroutes them to the cytosol for CC proteasomal degradation. Involved in clearance process by mediating CC G3BP1 extraction from stress granules. Also involved in DNA damage CC response: recruited to double-strand breaks (DSBs) sites in a RNF8- and CC RNF168-dependent manner and promotes the recruitment of TP53BP1 at DNA CC damage sites. Recruited to stalled replication forks by SPRTN: may act CC by mediating extraction of DNA polymerase eta (POLH) to prevent CC excessive translesion DNA synthesis and limit the incidence of CC mutations induced by DNA damage. Together with SPRTN metalloprotease, CC involved in the repair of covalent DNA-protein cross-links (DPCs) CC during DNA synthesis. Involved in interstrand cross-link repair in CC response to replication stress by mediating unloading of the CC ubiquitinated CMG helicase complex. Mediates extraction of PARP1 CC trapped to chromatin: recognizes and binds ubiquitinated PARP1 and CC promotes its removal. Required for cytoplasmic retrotranslocation of CC stressed/damaged mitochondrial outer-membrane proteins and their CC subsequent proteasomal degradation. Essential for the maturation of CC ubiquitin-containing autophagosomes and the clearance of ubiquitinated CC protein by autophagy. Acts as a negative regulator of type I interferon CC production by interacting with RIGI: interaction takes place when RIGI CC is ubiquitinated via 'Lys-63'-linked ubiquitin on its CARD domains, CC leading to recruit RNF125 and promote ubiquitination and degradation of CC RIGI. May play a role in the ubiquitin-dependent sorting of membrane CC proteins to lysosomes where they undergo degradation. May more CC particularly play a role in caveolins sorting in cells. By controlling CC the steady-state expression of the IGF1R receptor, indirectly regulates CC the insulin-like growth factor receptor signaling pathway (By CC similarity). {ECO:0000250|UniProtKB:P23787, CC ECO:0000250|UniProtKB:P46462, ECO:0000250|UniProtKB:P55072}. CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.6; CC Evidence={ECO:0000250|UniProtKB:P55072}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC -!- SUBUNIT: Homohexamer. Forms a ring-shaped particle of 12.5 nm diameter, CC that displays 6-fold radial symmetry. Part of a ternary complex CC containing STX5A, NSFL1C and VCP. NSFL1C forms a homotrimer that binds CC to one end of a VCP homohexamer. The complex binds to membranes CC enriched in phosphatidylethanolamine-containing lipids and promotes CC Golgi membrane fusion. Binds to a heterodimer of NPLOC4 and UFD1, CC binding to this heterodimer inhibits Golgi-membrane fusion. Interaction CC with VCIP135 leads to dissociation of the complex via ATP hydrolysis by CC VCP. Part of a ternary complex containing NPLOC4, UFD1 and VCP. CC Interacts with NSFL1C-like protein p37; the complex has membrane fusion CC activity and is required for Golgi and endoplasmic reticulum CC biogenesis. Interacts with SELENOS and SYVN1, as well as with DERL1 CC (via SHP-box motif), DERL2 and DERL3; which probably transfer misfolded CC proteins from the ER to VCP. Interacts with SVIP. Component of a CC complex required to couple retrotranslocation, ubiquitination and CC deglycosylation composed of NGLY1, SAKS1, AMFR, VCP and RAD23B. Part of CC a complex composed of STUB1/CHIP, VCP/p97, CHRNA3, and UBXN2A that CC modulates the ubiquitination and endoplasmic reticulum-associated CC degradation (ERAD) of CHRNA3 (By similarity). Within the complex UBXN2A CC acts as a scaffold protein required for the interaction of CHRNA3 with CC VCP/p97, this interaction also inhibits CHRNA3 ubiquitination by CC STUB1/CHIP and subsequently ERAD (By similarity). Interacts with UBXN2A CC (via UBX domain); the interaction is required for the interaction of CC CHRNA3 in the STUB1-VCP-UBXN2A complex (By similarity). Directly CC interacts with UBXN4 and RNF19A. Interacts with CASR. Interacts with CC UBE4B and YOD1. Interacts with clathrin. Interacts with RNF103. CC Interacts with TRIM13 and TRIM21. Component of a VCP/p97-AMFR/gp78 CC complex that participates in the final step of the endoplasmic CC reticulum-associated degradation (ERAD) of HMGCR. Interacts directly CC with AMFR/gp78 (via its VIM). Interacts with RHBDD1 (via C-terminal CC domain). Interacts with SPRTN; leading to recruitment to stalled CC replication forks. Interacts with WASHC5. Interacts with UBOX5. CC Interacts (via N-terminus) with UBXN7, UBXN8, and probably several CC other UBX domain-containing proteins (via UBX domains); the CC interactions are mutually exclusive with VIM-dependent interactions CC such as those with AMFR and SELENOS. Forms a complex with UBQLN1 and CC UBXN4. Interacts (via the PIM motif) with RNF31 (via the PUB domain). CC Interacts with RIGI and RNF125; interaction takes place when RIGI is CC ubiquitinated via 'Lys-63'-linked ubiquitin on its CARD domains, CC leading to recruit RNF125 and promote ubiquitination and degradation of CC RIGI. Interacts with BAG6. Interacts with UBXN10. Interacts with UBXN6; CC the interaction with UBXN6 is direct and competitive with UFD1. Forms a CC ternary complex with CAV1 and UBXN6. Interacts with PLAA, UBXN6 and CC YOD1; may form a complex involved in macroautophagy. Interacts with CC ANKZF1. Interacts with ubiquitin-binding protein FAF1. Interacts with CC ZFAND2B (via VIM motif); the interaction is direct. Interacts with CC ZFAND1 (via its ubiquitin-like region); this interaction occurs in an CC arsenite-dependent manner (By similarity). Interacts with CCDC47 (By CC similarity). Interacts with LMBR1L and UBAC2 (By similarity). Interacts CC with ATXN3 (By similarity). Interacts with TEX264; bridging VCP to CC covalent DNA-protein cross-links (DPCs) (By similarity). CC {ECO:0000250|UniProtKB:P46462, ECO:0000250|UniProtKB:P55072, CC ECO:0000250|UniProtKB:Q01853}. CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol CC {ECO:0000250|UniProtKB:P55072}. Endoplasmic reticulum CC {ECO:0000250|UniProtKB:P55072}. Nucleus {ECO:0000250|UniProtKB:P55072}. CC Cytoplasm, Stress granule {ECO:0000250|UniProtKB:P55072}. CC Note=Recruited to the cytoplasmic surface of the endoplasmic reticulum CC via interaction with AMFR/gp78. Following DNA double-strand breaks, CC recruited to the sites of damage. Recruited to stalled replication CC forks via interaction with SPRTN. Recruited to damaged lysosomes CC decorated with K48-linked ubiquitin chains. Colocalizes with TIA1, CC ZFAND1 and G3BP1 in cytoplasmic stress granules (SGs) in response to CC arsenite-induced stress treatment (By similarity). CC {ECO:0000250|UniProtKB:P55072}. CC -!- PTM: ISGylated. {ECO:0000250|UniProtKB:P55072}. CC -!- PTM: Methylation at Lys-315 catalyzed by VCPKMT is increased in the CC presence of ASPSCR1. Lys-315 methylation may decrease ATPase activity. CC {ECO:0000250|UniProtKB:P55072}. CC -!- PTM: Phosphorylated by tyrosine kinases in response to T-cell antigen CC receptor activation. Phosphorylated in mitotic cells. CC {ECO:0000250|UniProtKB:P46462}. CC -!- SIMILARITY: Belongs to the AAA ATPase family. {ECO:0000305}. CC -!- CAUTION: Valosin is an artifact of purification procedure, generated in CC vitro by cleavage of the whole protein upon acid extraction of tissues. CC {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M30143; AAA31142.1; -; mRNA. DR PIR; A26360; VPPG. DR RefSeq; NP_999445.1; NM_214280.1. DR AlphaFoldDB; P03974; -. DR SMR; P03974; -. DR BioGRID; 1149651; 1. DR STRING; 9823.ENSSSCP00000035359; -. DR PaxDb; 9823-ENSSSCP00000005692; -. DR PeptideAtlas; P03974; -. DR GeneID; 397524; -. DR KEGG; ssc:397524; -. DR CTD; 7415; -. DR eggNOG; KOG0730; Eukaryota. DR InParanoid; P03974; -. DR OrthoDB; 168438at2759; -. DR Proteomes; UP000008227; Unplaced. DR Proteomes; UP000314985; Unplaced. DR Proteomes; UP000694570; Unplaced. DR Proteomes; UP000694571; Unplaced. DR Proteomes; UP000694720; Unplaced. DR Proteomes; UP000694722; Unplaced. DR Proteomes; UP000694723; Unplaced. DR Proteomes; UP000694724; Unplaced. DR Proteomes; UP000694725; Unplaced. DR Proteomes; UP000694726; Unplaced. DR Proteomes; UP000694727; Unplaced. DR Proteomes; UP000694728; Unplaced. DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB. DR GO; GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB. DR GO; GO:0005829; C:cytosol; IBA:GO_Central. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0035861; C:site of double-strand break; ISS:UniProtKB. DR GO; GO:0034098; C:VCP-NPL4-UFD1 AAA ATPase complex; IBA:GO_Central. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central. DR GO; GO:0008289; F:lipid binding; IEA:UniProtKB-KW. DR GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central. DR GO; GO:0097352; P:autophagosome maturation; ISS:UniProtKB. DR GO; GO:0006914; P:autophagy; ISS:UniProtKB. DR GO; GO:1903843; P:cellular response to arsenite ion; ISS:UniProtKB. DR GO; GO:0034605; P:cellular response to heat; ISS:UniProtKB. DR GO; GO:0006974; P:DNA damage response; ISS:UniProtKB. DR GO; GO:0006281; P:DNA repair; ISS:UniProtKB. DR GO; GO:0006302; P:double-strand break repair; ISS:UniProtKB. DR GO; GO:0061857; P:endoplasmic reticulum stress-induced pre-emptive quality control; ISS:UniProtKB. DR GO; GO:0032510; P:endosome to lysosome transport via multivesicular body sorting pathway; ISS:UniProtKB. DR GO; GO:0071712; P:ER-associated misfolded protein catabolic process; IBA:GO_Central. DR GO; GO:0036503; P:ERAD pathway; ISS:UniProtKB. DR GO; GO:0036297; P:interstrand cross-link repair; ISS:UniProtKB. DR GO; GO:0016236; P:macroautophagy; ISS:UniProtKB. DR GO; GO:0051228; P:mitotic spindle disassembly; IBA:GO_Central. DR GO; GO:0010498; P:proteasomal protein catabolic process; ISS:UniProtKB. DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; ISS:UniProtKB. DR GO; GO:0016567; P:protein ubiquitination; ISS:UniProtKB. DR GO; GO:0106300; P:protein-DNA covalent cross-linking repair; ISS:UniProtKB. DR GO; GO:1905634; P:regulation of protein localization to chromatin; ISS:UniProtKB. DR GO; GO:0030970; P:retrograde protein transport, ER to cytosol; IBA:GO_Central. DR GO; GO:0035617; P:stress granule disassembly; ISS:UniProtKB. DR GO; GO:0019985; P:translesion synthesis; ISS:UniProtKB. DR GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; ISS:UniProtKB. DR CDD; cd19519; RecA-like_CDC48_r1-like; 1. DR CDD; cd19528; RecA-like_CDC48_r2-like; 1. DR Gene3D; 1.10.8.60; -; 1. DR Gene3D; 2.40.40.20; -; 1. DR Gene3D; 3.10.330.10; -; 1. DR Gene3D; 6.10.20.150; -; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR005938; AAA_ATPase_CDC48. DR InterPro; IPR041569; AAA_lid_3. DR InterPro; IPR009010; Asp_de-COase-like_dom_sf. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR004201; Cdc48_dom2. DR InterPro; IPR029067; CDC48_domain_2-like_sf. DR InterPro; IPR003338; CDC4_N-term_subdom. DR InterPro; IPR027417; P-loop_NTPase. DR NCBIfam; TIGR01243; CDC48; 1. DR PANTHER; PTHR23077; AAA-FAMILY ATPASE; 1. DR PANTHER; PTHR23077:SF69; TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; 1. DR Pfam; PF00004; AAA; 2. DR Pfam; PF17862; AAA_lid_3; 2. DR Pfam; PF02933; CDC48_2; 1. DR Pfam; PF02359; CDC48_N; 1. DR SMART; SM00382; AAA; 2. DR SMART; SM01072; CDC48_2; 1. DR SMART; SM01073; CDC48_N; 1. DR SUPFAM; SSF50692; ADC-like; 1. DR SUPFAM; SSF54585; Cdc48 domain 2-like; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2. DR PROSITE; PS00674; AAA; 2. PE 1: Evidence at protein level; KW Acetylation; ATP-binding; Autophagy; Cytoplasm; Direct protein sequencing; KW DNA damage; DNA repair; Endoplasmic reticulum; Hydrolase; Isopeptide bond; KW Lipid-binding; Methylation; Nucleotide-binding; Nucleus; Phosphoprotein; KW Reference proteome; Transport; Ubl conjugation; Ubl conjugation pathway. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0000250|UniProtKB:P55072" FT CHAIN 2..806 FT /note="Transitional endoplasmic reticulum ATPase" FT /id="PRO_0000084574" FT REGION 708..727 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 768..806 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 797..806 FT /note="Interaction with UBXN6" FT /evidence="ECO:0000250" FT COMPBIAS 768..794 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT BINDING 247..253 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:P55072" FT BINDING 348 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:P55072" FT BINDING 384 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:P55072" FT BINDING 521..526 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 2 FT /note="N-acetylalanine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 3 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 7 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 13 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 37 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 315 FT /note="N6,N6,N6-trimethyllysine; by VCPKMT" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 436 FT /note="Phosphothreonine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 462 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 502 FT /note="N6-acetyllysine" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 505 FT /note="N6-acetyllysine" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 668 FT /note="N6-acetyllysine; alternate" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 668 FT /note="N6-succinyllysine; alternate" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 702 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 754 FT /note="N6-acetyllysine" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT MOD_RES 770 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 775 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 787 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:P55072" FT MOD_RES 805 FT /note="Phosphotyrosine" FT /evidence="ECO:0000250|UniProtKB:Q01853" FT CROSSLNK 8 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:P55072" FT CROSSLNK 18 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:P55072" SQ SEQUENCE 806 AA; 89289 MW; 83B36B03DB7D9B35 CRC64; MASGADSKGD DLSTAILKQK NRPNRLIVDE AINEDNSVVS LSQPKMDELQ LFRGDTVLLK GKKRREAVCI VLSDDTCSDE KIRMNRVVRN NLRVHLGDVI SIQPCPDVKY GKRIHVLPID DTVEGITGNL FEVYLKPYFL EAYRPIRKGD IFLVRGGMRA VEFKVVETDP SPYCIVAPDT VIHCEGEPIK REDEEESLNE VGYDDIGGCR KQLAQIKEMV ELPLRHPALF KAIGVKPPRG ILLYGPPGTG KTLIARAVAN ETGAFFFLIN GPEIMSKLAG ESESNLRKAF EEAEKNAPAI IFIDELDAIA PKREKTHGEV ERRIVSQLLT LMDGLKQRAH VIVMAATNRP NSIDPALRRF GRFDREVDIG IPDATGRLEI LQIHTKNMKL ADDVDLEQVA NETHGHVGAD LAALCSEAAL QAIRKKMDLI DLEDETIDAE VMNSLAVTMD DFRWALSQSN PSALRETVVE VPQVTWEDIG GLEDVKRELQ DLVQYPVEHP DKFLKFGMTP SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARQAA PCVLFFDELD SIAKARGGNI GDGGGAADRV INQILTEMDG MSTKKNVFII GATNRPDIID PAILRPGRLD QLIYIPLPDE KSRVAILKAN LRKSPVAKDV DLEFLAKMTN GFSGADLTEI CQRACKLAIR ESIESEIRRE RERQTNPSAM EVEEDDPVPE IRRDHFEEAM RFARRSVSDN DIRKYEMFAQ TLQQSRGFGS FRFPSGNQGG AGPSQGSGGG TGGSVYTEDN DDDLYG //