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Protein

Protein ninB

Gene

ninB

Organism
Enterobacteria phage lambda (Bacteriophage lambda)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein ninB
Gene namesi
Name:ninB
OrganismiEnterobacteria phage lambda (Bacteriophage lambda)
Taxonomic identifieri10710 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesSiphoviridaeLambdalikevirus
Virus hostiEscherichia coli [TaxID: 562]
Proteomesi
  • UP000001711 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000776081 – 146Protein ninBAdd BLAST146

Interactioni

Protein-protein interaction databases

IntActiP03765. 5 interactors.

Structurei

Secondary structure

1146
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 10Combined sources7
Helixi11 – 22Combined sources12
Beta strandi28 – 30Combined sources3
Beta strandi32 – 38Combined sources7
Helixi43 – 59Combined sources17
Helixi69 – 80Combined sources12
Beta strandi84 – 87Combined sources4
Beta strandi89 – 97Combined sources9
Turni101 – 103Combined sources3
Helixi106 – 122Combined sources17
Helixi128 – 140Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1PC6X-ray2.51A/B1-146[»]
ProteinModelPortaliP03765.
SMRiP03765.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03765.

Family & Domainsi

Sequence similaritiesi

Belongs to the ninB family.Curated

Family and domain databases

Gene3Di1.10.3790.10. 1 hit.
InterProiIPR008711. Recombinase_NinB.
[Graphical view]
PfamiPF05772. NinB. 1 hit.
[Graphical view]
SUPFAMiSSF103370. SSF103370. 1 hit.

Sequencei

Sequence statusi: Complete.

P03765-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLTFEIRS PAHQQNAIHA VQQILPDPTK PIVVTIQERN RSLDQNRKLW
60 70 80 90 100
ACLGDVSRQV EWHGRWLDAE SWKCVFTAAL KQQDVVPNLA GNGFVVIGQS
110 120 130 140
TSRMRVGEFA ELLELIQAFG TERGVKWSDE ARLALEWKAR WGDRAA
Length:146
Mass (Da):16,648
Last modified:July 21, 1986 - v1
Checksum:i31C71262260ED3D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02459 Genomic DNA. Translation: AAA96587.1.
PIRiH43010. QXBP4L.
RefSeqiNP_040634.1. NC_001416.1.

Genome annotation databases

GeneIDi2703497.
KEGGivg:2703497.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02459 Genomic DNA. Translation: AAA96587.1.
PIRiH43010. QXBP4L.
RefSeqiNP_040634.1. NC_001416.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1PC6X-ray2.51A/B1-146[»]
ProteinModelPortaliP03765.
SMRiP03765.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP03765. 5 interactors.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi2703497.
KEGGivg:2703497.

Miscellaneous databases

EvolutionaryTraceiP03765.

Family and domain databases

Gene3Di1.10.3790.10. 1 hit.
InterProiIPR008711. Recombinase_NinB.
[Graphical view]
PfamiPF05772. NinB. 1 hit.
[Graphical view]
SUPFAMiSSF103370. SSF103370. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNINB_LAMBD
AccessioniPrimary (citable) accession number: P03765
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: November 2, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.