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Protein

Coat protein

Gene
N/A
Organism
Enterobacteria phage Qbeta (Bacteriophage Q-beta)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Forms the phage shell; binds to the phage RNA.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiEnterobacteria phage Qbeta (Bacteriophage Q-beta)
Taxonomic identifieri39803 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageLeviviridaeAllolevivirus
Virus hostiEscherichia coli [TaxID: 562]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by host1 Publication
ChainiPRO_00001648462 – 133Coat proteinAdd BLAST132

Structurei

Secondary structure

1133
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 12Combined sources6
Turni13 – 16Combined sources4
Beta strandi18 – 27Combined sources10
Turni29 – 31Combined sources3
Beta strandi34 – 37Combined sources4
Helixi43 – 45Combined sources3
Beta strandi48 – 54Combined sources7
Beta strandi62 – 73Combined sources12
Beta strandi78 – 80Combined sources3
Beta strandi87 – 97Combined sources11
Helixi103 – 116Combined sources14
Helixi120 – 126Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1QBEX-ray3.50A/B/C2-133[»]
4L8HX-ray2.40A/B2-133[»]
5KIPelectron microscopy3.70A/B/C1-133[»]
ProteinModelPortaliP03615.
SMRiP03615.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03615.

Family & Domainsi

Family and domain databases

Gene3Di3.30.380.10. 1 hit.
InterProiIPR002703. Levivir_coat.
IPR015954. Phage_RNA-type_capsid.
[Graphical view]
PfamiPF01819. Levi_coat. 1 hit.
[Graphical view]
SUPFAMiSSF55405. SSF55405. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P03615-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKLETVTLG NIGKDGKQTL VLNPRGVNPT NGVASLSQAG AVPALEKRVT
60 70 80 90 100
VSVSQPSRNR KNYKVQVKIQ NPTACTANGS CDPSVTRQAY ADVTFSFTQY
110 120 130
STDEERAFVR TELAALLASP LLIDAIDQLN PAY
Length:133
Mass (Da):14,254
Last modified:January 23, 2007 - v2
Checksum:i1B7967F0256C31DE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti23N → D AA sequence (PubMed:5570434).Curated1
Sequence conflicti57Missing AA sequence (PubMed:5570434).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M99039 Unassigned DNA. Translation: AAA16662.1.
V00643 mRNA. Translation: CAA23992.1.
PIRiA92240. VCBPQB.

Cross-referencesi

Web resourcesi

Virus Particle ExploreR db

Icosahedral capsid structure

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M99039 Unassigned DNA. Translation: AAA16662.1.
V00643 mRNA. Translation: CAA23992.1.
PIRiA92240. VCBPQB.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1QBEX-ray3.50A/B/C2-133[»]
4L8HX-ray2.40A/B2-133[»]
5KIPelectron microscopy3.70A/B/C1-133[»]
ProteinModelPortaliP03615.
SMRiP03615.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP03615.

Family and domain databases

Gene3Di3.30.380.10. 1 hit.
InterProiIPR002703. Levivir_coat.
IPR015954. Phage_RNA-type_capsid.
[Graphical view]
PfamiPF01819. Levi_coat. 1 hit.
[Graphical view]
SUPFAMiSSF55405. SSF55405. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiCOAT_BPQBE
AccessioniPrimary (citable) accession number: P03615
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.