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Protein

Capsid protein

Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Self-assembles to form an icosahedral capsid of 17 nm in diameter.3 Publications

Cofactori

Ca2+Note: Binds 3 Ca2+ ions per subunit.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi26Calcium 11 Publication1
Metal bindingi26Calcium 21 Publication1
Metal bindingi26Calcium 31 Publication1
Metal bindingi56Calcium 11 Publication1
Metal bindingi56Calcium 21 Publication1
Metal bindingi56Calcium 31 Publication1
Metal bindingi62Calcium 1; via carbonyl oxygen2 Publications1
Metal bindingi65Calcium 1; via carbonyl oxygen2 Publications1
Metal bindingi139Calcium 1; via carbonyl oxygen1 Publication1
Metal bindingi139Calcium 2; via carbonyl oxygen1 Publication1
Metal bindingi139Calcium 3; via carbonyl oxygen1 Publication1
Metal bindingi195Calcium 12 Publications1

GO - Molecular functioni

Keywordsi

Molecular functionRNA-binding
LigandCalcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid proteinCurated
Alternative name(s):
Coat proteinCurated
OrganismiSatellite tobacco necrosis virus 1
Taxonomic identifieri12445 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageAlbetovirus
Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]
Proteomesi
  • UP000211161 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002225341 – 196Capsid proteinAdd BLAST196

Proteomic databases

PRIDEiP03606

Structurei

Secondary structure

1196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi11 – 23Combined sources13
Beta strandi28 – 38Combined sources11
Beta strandi44 – 49Combined sources6
Beta strandi54 – 57Combined sources4
Beta strandi60 – 62Combined sources3
Beta strandi65 – 78Combined sources14
Beta strandi84 – 93Combined sources10
Beta strandi97 – 99Combined sources3
Helixi103 – 106Combined sources4
Beta strandi107 – 111Combined sources5
Helixi118 – 122Combined sources5
Beta strandi125 – 136Combined sources12
Beta strandi138 – 140Combined sources3
Beta strandi143 – 151Combined sources9
Beta strandi154 – 163Combined sources10
Helixi164 – 166Combined sources3
Beta strandi172 – 179Combined sources8
Beta strandi184 – 194Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BUKX-ray2.45A1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
4V4MX-ray1.450/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
ProteinModelPortaliP03606
SMRiP03606
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03606

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 19RNA-binding1 PublicationAdd BLAST19

Family and domain databases

CDDicd00259 STNV, 1 hit
Gene3Di2.60.120.20, 1 hit
InterProiView protein in InterPro
IPR005597 Satellite_CP
IPR037164 Satellite_virus_coat_sf
IPR029053 Viral_coat
PfamiView protein in Pfam
PF03898 TNV_CP, 1 hit
PIRSFiPIRSF004094 Satellite_CP, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD022795 Satellite_CP, 1 hit
SUPFAMiSSF88650 SSF88650, 1 hit

Sequencei

Sequence statusi: Complete.

P03606-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN
60 70 80 90 100
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT
110 120 130 140 150
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL
160 170 180 190
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA
Length:196
Mass (Da):21,715
Last modified:July 21, 1986 - v1
Checksum:iEE7C4FEA77A2D7A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V01468 Genomic RNA Translation: CAA24714.1

Similar proteinsi

Entry informationi

Entry nameiCAPSD_STNV1
AccessioniPrimary (citable) accession number: P03606
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: May 23, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

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