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Protein

Coat protein

Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Ca2+Note: Binds 3 Ca2+ ions per subunit.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi26Calcium 11
Metal bindingi56Calcium 21
Metal bindingi62Calcium 1; via carbonyl oxygen1
Metal bindingi65Calcium 1; via carbonyl oxygen1
Metal bindingi139Calcium 3; via carbonyl oxygen1
Metal bindingi195Calcium 11

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiSatellite tobacco necrosis virus 1
Taxonomic identifieri12445 [NCBI]
Taxonomic lineageiVirusesSatellitesSatellite Viruses
Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002225341 – 196Coat proteinAdd BLAST196

Structurei

Secondary structure

1196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi11 – 23Combined sources13
Beta strandi28 – 38Combined sources11
Beta strandi44 – 49Combined sources6
Beta strandi54 – 57Combined sources4
Beta strandi60 – 62Combined sources3
Beta strandi65 – 78Combined sources14
Beta strandi84 – 93Combined sources10
Beta strandi97 – 99Combined sources3
Helixi103 – 106Combined sources4
Beta strandi107 – 111Combined sources5
Helixi118 – 122Combined sources5
Beta strandi125 – 136Combined sources12
Beta strandi138 – 140Combined sources3
Beta strandi143 – 151Combined sources9
Beta strandi154 – 163Combined sources10
Helixi164 – 166Combined sources3
Beta strandi172 – 179Combined sources8
Beta strandi184 – 194Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BUKX-ray2.45A1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
4V4MX-ray1.450/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
ProteinModelPortaliP03606.
SMRiP03606.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03606.

Family & Domainsi

Family and domain databases

CDDicd00259. STNV. 1 hit.
Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.

Sequencei

Sequence statusi: Complete.

P03606-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN
60 70 80 90 100
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT
110 120 130 140 150
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL
160 170 180 190
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA
Length:196
Mass (Da):21,715
Last modified:July 21, 1986 - v1
Checksum:iEE7C4FEA77A2D7A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

Genome annotation databases

GeneIDi1494489.
KEGGivg:1494489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BUKX-ray2.45A1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
4V4MX-ray1.450/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
ProteinModelPortaliP03606.
SMRiP03606.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1494489.
KEGGivg:1494489.

Miscellaneous databases

EvolutionaryTraceiP03606.

Family and domain databases

CDDicd00259. STNV. 1 hit.
Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiCOAT_STNV1
AccessioniPrimary (citable) accession number: P03606
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: November 2, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.