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P03606

- COAT_STNV1

UniProt

P03606 - COAT_STNV1

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Protein
Coat protein
Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Cofactori

Binds 3 calcium ions per subunit.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Calcium 1
Metal bindingi56 – 561Calcium 2
Metal bindingi62 – 621Calcium 1; via carbonyl oxygen
Metal bindingi65 – 651Calcium 1; via carbonyl oxygen
Metal bindingi139 – 1391Calcium 3; via carbonyl oxygen
Metal bindingi195 – 1951Calcium 1

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiSatellite tobacco necrosis virus 1
Taxonomic identifieri12445 [NCBI]
Taxonomic lineageiVirusesSatellitesSatellite Viruses
Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 196196Coat protein
PRO_0000222534Add
BLAST

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 2310
Beta strandi28 – 3811
Beta strandi44 – 496
Beta strandi54 – 574
Beta strandi60 – 623
Beta strandi65 – 7814
Beta strandi84 – 9310
Beta strandi97 – 993
Helixi103 – 1064
Beta strandi107 – 1115
Helixi118 – 1225
Beta strandi125 – 13612
Beta strandi138 – 1403
Beta strandi143 – 1519
Beta strandi154 – 16310
Helixi164 – 1663
Beta strandi172 – 1798
Beta strandi184 – 19411

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VTZX-ray1.450/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
2BUKX-ray2.45A1-196[»]
3RQVX-ray1.45A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
ProteinModelPortaliP03606.
SMRiP03606. Positions 13-196.

Miscellaneous databases

EvolutionaryTraceiP03606.

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.

Sequencei

Sequence statusi: Complete.

P03606-1 [UniParc]FASTAAdd to Basket

« Hide

MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN    50
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT 100
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL 150
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA 196
Length:196
Mass (Da):21,715
Last modified:July 21, 1986 - v1
Checksum:iEE7C4FEA77A2D7A5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

Genome annotation databases

GeneIDi1494489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1 .
RefSeqi NP_062917.1. NC_001557.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VTZ X-ray 1.45 0/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z 1-196 [» ]
2BUK X-ray 2.45 A 1-196 [» ]
3RQV X-ray 1.45 A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d 1-196 [» ]
3S4G X-ray 6.00 A 1-196 [» ]
4BCU X-ray 2.29 A 1-196 [» ]
ProteinModelPortali P03606.
SMRi P03606. Positions 13-196.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1494489.

Miscellaneous databases

EvolutionaryTracei P03606.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF03898. TNV_CP. 1 hit.
[Graphical view ]
PIRSFi PIRSF004094. Satellite_CP. 1 hit.
ProDomi PD022795. Satellite_CP. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF88650. SSF88650. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA."
    Ysebaert M., van Emmelo J., Fiers W.
    J. Mol. Biol. 143:273-287(1980) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5-A resolution."
    Jones T.A., Liljas L.
    J. Mol. Biol. 177:735-767(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS).

Entry informationi

Entry nameiCOAT_STNV1
AccessioniPrimary (citable) accession number: P03606
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: July 9, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

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