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P03606

- COAT_STNV1

UniProt

P03606 - COAT_STNV1

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Protein

Coat protein

Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Cofactori

Binds 3 calcium ions per subunit.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Calcium 1
Metal bindingi56 – 561Calcium 2
Metal bindingi62 – 621Calcium 1; via carbonyl oxygen
Metal bindingi65 – 651Calcium 1; via carbonyl oxygen
Metal bindingi139 – 1391Calcium 3; via carbonyl oxygen
Metal bindingi195 – 1951Calcium 1

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiSatellite tobacco necrosis virus 1
Taxonomic identifieri12445 [NCBI]
Taxonomic lineageiVirusesSatellitesSatellite Viruses
Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 196196Coat proteinPRO_0000222534Add
BLAST

Structurei

Secondary structure

1
196
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 2310
Beta strandi28 – 3811
Beta strandi44 – 496
Beta strandi54 – 574
Beta strandi60 – 623
Beta strandi65 – 7814
Beta strandi84 – 9310
Beta strandi97 – 993
Helixi103 – 1064
Beta strandi107 – 1115
Helixi118 – 1225
Beta strandi125 – 13612
Beta strandi138 – 1403
Beta strandi143 – 1519
Beta strandi154 – 16310
Helixi164 – 1663
Beta strandi172 – 1798
Beta strandi184 – 19411

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VTZX-ray1.450/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
2BUKX-ray2.45A1-196[»]
3RQVX-ray1.45A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
ProteinModelPortaliP03606.
SMRiP03606. Positions 13-196.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03606.

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.

Sequencei

Sequence statusi: Complete.

P03606-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN
60 70 80 90 100
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT
110 120 130 140 150
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL
160 170 180 190
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA
Length:196
Mass (Da):21,715
Last modified:July 21, 1986 - v1
Checksum:iEE7C4FEA77A2D7A5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

Genome annotation databases

GeneIDi1494489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1 .
RefSeqi NP_062917.1. NC_001557.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VTZ X-ray 1.45 0/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z 1-196 [» ]
2BUK X-ray 2.45 A 1-196 [» ]
3RQV X-ray 1.45 A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d 1-196 [» ]
3S4G X-ray 6.00 A 1-196 [» ]
4BCU X-ray 2.29 A 1-196 [» ]
ProteinModelPortali P03606.
SMRi P03606. Positions 13-196.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1494489.

Miscellaneous databases

EvolutionaryTracei P03606.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF03898. TNV_CP. 1 hit.
[Graphical view ]
PIRSFi PIRSF004094. Satellite_CP. 1 hit.
ProDomi PD022795. Satellite_CP. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF88650. SSF88650. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA."
    Ysebaert M., van Emmelo J., Fiers W.
    J. Mol. Biol. 143:273-287(1980) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5-A resolution."
    Jones T.A., Liljas L.
    J. Mol. Biol. 177:735-767(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS).

Entry informationi

Entry nameiCOAT_STNV1
AccessioniPrimary (citable) accession number: P03606
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: October 1, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3