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P03606 (COAT_STNV1) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Coat protein
OrganismSatellite tobacco necrosis virus 1
Taxonomic identifier12445 [NCBI]
Taxonomic lineageViruses › Satellites › Satellite Viruses ›
Virus hostPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Protein attributes

Sequence length196 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Binds 3 calcium ions per subunit.

Subcellular location

Virion Potential.

Ontologies

Keywords
   Cellular componentVirion
   LigandCalcium
Metal-binding
   Molecular functionCapsid protein
   Technical term3D-structure
Gene Ontology (GO)
   Cellular_componentviral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 196196Coat protein
PRO_0000222534

Sites

Metal binding261Calcium 1
Metal binding561Calcium 2
Metal binding621Calcium 1; via carbonyl oxygen
Metal binding651Calcium 1; via carbonyl oxygen
Metal binding1391Calcium 3; via carbonyl oxygen
Metal binding1951Calcium 1

Secondary structure

1 ................................... 196
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P03606 [UniParc].

Last modified July 21, 1986. Version 1.
Checksum: EE7C4FEA77A2D7A5

FASTA19621,715
        10         20         30         40         50         60 
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN GIIQGDDINQ 

        70         80         90        100        110        120 
RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT PTVLEVLNTA NFMSQYNPIT 

       130        140        150        160        170        180 
LQQKRFTILK DVTLNCSLTG ESIKDRIINL PGQLVNYNGA TAVAASNGPG AIFMLQIGDS 

       190 
LVGLWDSSYE AVYTDA

« Hide

References

[1]"Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA."
Ysebaert M., van Emmelo J., Fiers W.
J. Mol. Biol. 143:273-287(1980) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5-A resolution."
Jones T.A., Liljas L.
J. Mol. Biol. 177:735-767(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS).
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqNP_062917.1. NC_001557.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VTZX-ray1.450/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
2BUKX-ray2.45A1-196[»]
3RQVX-ray1.45A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
ProteinModelPortalP03606.
SMRP03606. Positions 13-196.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1494489.

Family and domain databases

InterProIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
[Graphical view]
PfamPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFPIRSF004094. Satellite_CP. 1 hit.
ProDomPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF88650. Satellite_virus_coat. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP03606.

Entry information

Entry nameCOAT_STNV1
AccessionPrimary (citable) accession number: P03606
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: May 1, 2013
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

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