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P03606

- COAT_STNV1

UniProt

P03606 - COAT_STNV1

Protein

Coat protein

Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (21 Jul 1986)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 3 calcium ions per subunit.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi26 – 261Calcium 1
    Metal bindingi56 – 561Calcium 2
    Metal bindingi62 – 621Calcium 1; via carbonyl oxygen
    Metal bindingi65 – 651Calcium 1; via carbonyl oxygen
    Metal bindingi139 – 1391Calcium 3; via carbonyl oxygen
    Metal bindingi195 – 1951Calcium 1

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    Calcium, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Coat protein
    OrganismiSatellite tobacco necrosis virus 1
    Taxonomic identifieri12445 [NCBI]
    Taxonomic lineageiVirusesSatellitesSatellite Viruses
    Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
    Tulipa gesneriana (Garden tulip) [TaxID: 13306]

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 196196Coat proteinPRO_0000222534Add
    BLAST

    Structurei

    Secondary structure

    1
    196
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi14 – 2310
    Beta strandi28 – 3811
    Beta strandi44 – 496
    Beta strandi54 – 574
    Beta strandi60 – 623
    Beta strandi65 – 7814
    Beta strandi84 – 9310
    Beta strandi97 – 993
    Helixi103 – 1064
    Beta strandi107 – 1115
    Helixi118 – 1225
    Beta strandi125 – 13612
    Beta strandi138 – 1403
    Beta strandi143 – 1519
    Beta strandi154 – 16310
    Helixi164 – 1663
    Beta strandi172 – 1798
    Beta strandi184 – 19411

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VTZX-ray1.450/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
    2BUKX-ray2.45A1-196[»]
    3RQVX-ray1.45A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d1-196[»]
    3S4GX-ray6.00A1-196[»]
    4BCUX-ray2.29A1-196[»]
    ProteinModelPortaliP03606.
    SMRiP03606. Positions 13-196.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP03606.

    Family & Domainsi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR005597. Satellite_CP.
    IPR010392. Satellite_virus_coat.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF03898. TNV_CP. 1 hit.
    [Graphical view]
    PIRSFiPIRSF004094. Satellite_CP. 1 hit.
    ProDomiPD022795. Satellite_CP. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF88650. SSF88650. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P03606-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN    50
    GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT 100
    PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL 150
    PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA 196
    Length:196
    Mass (Da):21,715
    Last modified:July 21, 1986 - v1
    Checksum:iEE7C4FEA77A2D7A5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    V01468 Genomic RNA. Translation: CAA24714.1.
    RefSeqiNP_062917.1. NC_001557.1.

    Genome annotation databases

    GeneIDi1494489.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    V01468 Genomic RNA. Translation: CAA24714.1 .
    RefSeqi NP_062917.1. NC_001557.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VTZ X-ray 1.45 0/1/2/3/4/5/6/7/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z 1-196 [» ]
    2BUK X-ray 2.45 A 1-196 [» ]
    3RQV X-ray 1.45 A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d 1-196 [» ]
    3S4G X-ray 6.00 A 1-196 [» ]
    4BCU X-ray 2.29 A 1-196 [» ]
    ProteinModelPortali P03606.
    SMRi P03606. Positions 13-196.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1494489.

    Miscellaneous databases

    EvolutionaryTracei P03606.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR005597. Satellite_CP.
    IPR010392. Satellite_virus_coat.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF03898. TNV_CP. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF004094. Satellite_CP. 1 hit.
    ProDomi PD022795. Satellite_CP. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF88650. SSF88650. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA."
      Ysebaert M., van Emmelo J., Fiers W.
      J. Mol. Biol. 143:273-287(1980) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5-A resolution."
      Jones T.A., Liljas L.
      J. Mol. Biol. 177:735-767(1984) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS).

    Entry informationi

    Entry nameiCOAT_STNV1
    AccessioniPrimary (citable) accession number: P03606
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: July 21, 1986
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references

    External Data

    Dasty 3