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Protein

Coat protein

Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Ca2+Note: Binds 3 Ca2+ ions per subunit.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Calcium 1
Metal bindingi56 – 561Calcium 2
Metal bindingi62 – 621Calcium 1; via carbonyl oxygen
Metal bindingi65 – 651Calcium 1; via carbonyl oxygen
Metal bindingi139 – 1391Calcium 3; via carbonyl oxygen
Metal bindingi195 – 1951Calcium 1

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
OrganismiSatellite tobacco necrosis virus 1
Taxonomic identifieri12445 [NCBI]
Taxonomic lineageiVirusesSatellitesSatellite Viruses
Virus hostiPhaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Subcellular locationi

  1. Virion Curated

GO - Cellular componenti

  1. viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 196196Coat proteinPRO_0000222534Add
BLAST

Structurei

Secondary structure

1
196
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 2313Combined sources
Beta strandi28 – 3811Combined sources
Beta strandi44 – 496Combined sources
Beta strandi54 – 574Combined sources
Beta strandi60 – 623Combined sources
Beta strandi65 – 7814Combined sources
Beta strandi84 – 9310Combined sources
Beta strandi97 – 993Combined sources
Helixi103 – 1064Combined sources
Beta strandi107 – 1115Combined sources
Helixi118 – 1225Combined sources
Beta strandi125 – 13612Combined sources
Beta strandi138 – 1403Combined sources
Beta strandi143 – 1519Combined sources
Beta strandi154 – 16310Combined sources
Helixi164 – 1663Combined sources
Beta strandi172 – 1798Combined sources
Beta strandi184 – 19411Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BUKX-ray2.45A1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
4V4MX-ray1.450/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
SMRiP03606. Positions 13-196.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03606.

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.

Sequencei

Sequence statusi: Complete.

P03606-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN
60 70 80 90 100
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT
110 120 130 140 150
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL
160 170 180 190
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA
Length:196
Mass (Da):21,715
Last modified:July 21, 1986 - v1
Checksum:iEE7C4FEA77A2D7A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

Genome annotation databases

GeneIDi1494489.
KEGGivg:1494489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
V01468 Genomic RNA. Translation: CAA24714.1.
RefSeqiNP_062917.1. NC_001557.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BUKX-ray2.45A1-196[»]
3S4GX-ray6.00A1-196[»]
4BCUX-ray2.29A1-196[»]
4V4MX-ray1.450/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z1-196[»]
SMRiP03606. Positions 13-196.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1494489.
KEGGivg:1494489.

Miscellaneous databases

EvolutionaryTraceiP03606.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR005597. Satellite_CP.
IPR010392. Satellite_virus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF03898. TNV_CP. 1 hit.
[Graphical view]
PIRSFiPIRSF004094. Satellite_CP. 1 hit.
ProDomiPD022795. Satellite_CP. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF88650. SSF88650. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Total nucleotide sequence of a nearly full-size DNA copy of satellite tobacco necrosis virus RNA."
    Ysebaert M., van Emmelo J., Fiers W.
    J. Mol. Biol. 143:273-287(1980) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5-A resolution."
    Jones T.A., Liljas L.
    J. Mol. Biol. 177:735-767(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS).

Entry informationi

Entry nameiCOAT_STNV1
AccessioniPrimary (citable) accession number: P03606
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: April 1, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.