##gff-version 3 P03599 UniProtKB Chain 1 1046 . . . ID=PRO_0000445839;Note=RNA2 polyprotein P03599 UniProtKB Chain 1 459 . . . ID=PRO_0000037024;Note=VP58 P03599 UniProtKB Chain 118 459 . . . ID=PRO_0000445840;Note=Movement protein P03599 UniProtKB Chain 460 833 . . . ID=PRO_0000037025;Note=Large capsid protein P03599 UniProtKB Chain 834 1046 . . . ID=PRO_0000445841;Note=Small capsid protein precursor P03599 UniProtKB Chain 834 1022 . . . ID=PRO_0000037026;Note=Mature small capsid protein P03599 UniProtKB Chain 1023 1046 . . . ID=PRO_0000037027;Note=Small capsid protein C-terminus part P03599 UniProtKB Region 62 84 . . . Note=Hydrophobic;Ontology_term=ECO:0000255;evidence=ECO:0000255 P03599 UniProtKB Region 409 415 . . . Note=Involved in tubule formation by the movement protein;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:12556992;Dbxref=PMID:12556992 P03599 UniProtKB Site 459 460 . . . Note=Cleavage%3B by viral protease;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10049828;Dbxref=PMID:10049828 P03599 UniProtKB Site 476 476 . . . Note=Interaction with the viral RNA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Site 633 633 . . . Note=Interaction with the viral RNA%3B probable role in viral RNA packaging;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:28373698;Dbxref=PMID:28373698 P03599 UniProtKB Site 649 649 . . . Note=Interaction with the viral RNA%3B probable role in viral RNA packaging;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:26657148,ECO:0000269|PubMed:28373698;Dbxref=PMID:26657148,PMID:28373698 P03599 UniProtKB Site 833 834 . . . Note=Cleavage%3B by viral protease;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10049828;Dbxref=PMID:10049828 P03599 UniProtKB Site 1022 1023 . . . Note=Cleavage;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:27021160;Dbxref=PMID:27021160 P03599 UniProtKB Site 1025 1025 . . . Note=Involved in viral capsid assembly and RNA binding;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Modified residue 460 460 . . . Note=N-acetylmethionine%3B by host;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:6641721;Dbxref=PMID:6641721 P03599 UniProtKB Alternative sequence 1 117 . . . ID=VSP_059978;Note=In isoform 2. Missing P03599 UniProtKB Mutagenesis 126 127 . . . Note=No effect on the formation of tubules induced by the movement protein%3B No effect on infectivity. IP->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 209 210 . . . Note=Strong decrease in the formation of tubules induced by the movement protein%3B complete loss of infectivity. PV->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 220 221 . . . Note=No effect on the formation of tubules induced by the movement protein%3B No effect on infectivity. SD->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 238 239 . . . Note=Complete loss of formation of tubules induced by the movement protein%3B No effect on infectivity. IE->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 259 260 . . . Note=Complete loss of formation of tubules induced by the movement protein and complete loss of GTP binding%3B No effect on infectivity. VD->AA;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:10662615,ECO:0000269|PubMed:14722313;Dbxref=PMID:10662615,PMID:14722313 P03599 UniProtKB Mutagenesis 259 259 . . . Note=Complete loss of GTP binding%3B when associated with A-260. V->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:14722313;Dbxref=PMID:14722313 P03599 UniProtKB Mutagenesis 260 260 . . . Note=Complete loss of GTP binding%3B when associated with A-259. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:14722313;Dbxref=PMID:14722313 P03599 UniProtKB Mutagenesis 279 280 . . . Note=Complete loss of formation of tubules induced by the movement protein%3B No effect on infectivity. RG->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 409 410 . . . Note=No effect on the formation of tubules induced by the movement protein%3B No effect on infectivity. LK->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 448 449 . . . Note=No effect on the formation of tubules induced by the movement protein%3B No effect on infectivity. LD->AA;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10662615;Dbxref=PMID:10662615 P03599 UniProtKB Mutagenesis 476 476 . . . Note=Complete loss of RNA packaging and decreased capsid assembly. R->D%2CE;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 476 476 . . . Note=No effect on viral yield and virus systemic transport. R->G%2CK%2CW;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 633 633 . . . Note=Loss of hability to cause a systemic infection in the host plant%3B no effect on encapsidation. N->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:28373698;Dbxref=PMID:28373698 P03599 UniProtKB Mutagenesis 633 633 . . . Note=Markedly reduced viral yield and loss of hability to cause a systemic infection in the host plant probably due to reduced RNA encapsidation. N->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:28373698;Dbxref=PMID:28373698 P03599 UniProtKB Mutagenesis 649 649 . . . Note=No effect. W->A%2CD;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 649 649 . . . Note=Complete loss of viral RNA binding and capsid assembly. W->F;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 942 942 . . . Note=Loss of capsid assembly. V->W;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 980 980 . . . Note=Complete loss of capsid assembly. E->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 1025 1025 . . . Note=Strongly reduces the efficiency of RNA packaging. No effect on particle assembly. F->W;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 1026 1026 . . . Note=Complete loss of capsid assembly. R->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Mutagenesis 1027 1027 . . . Note=Slightly reduced viral particle yield. F->W;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26657148;Dbxref=PMID:26657148 P03599 UniProtKB Beta strand 465 467 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 468 470 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1NY7 P03599 UniProtKB Turn 479 481 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 482 491 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 499 505 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 506 510 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 518 522 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 525 527 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 529 536 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 546 555 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 563 566 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 569 574 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Turn 576 578 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 579 586 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 597 602 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 606 613 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 623 635 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 645 661 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 663 665 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 669 674 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 680 682 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1NY7 P03599 UniProtKB Beta strand 685 687 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 690 695 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 698 711 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 721 726 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 736 739 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 742 745 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 753 758 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 760 762 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 767 770 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Turn 777 779 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 784 791 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 796 798 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 801 818 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 846 851 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 861 866 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Turn 867 869 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 872 877 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 881 884 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 888 895 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 896 911 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 916 918 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 923 929 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 932 935 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5A32 P03599 UniProtKB Beta strand 938 943 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 949 957 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 960 963 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Turn 970 973 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 978 984 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Turn 986 988 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 989 998 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Beta strand 1003 1009 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5FMO P03599 UniProtKB Helix 1027 1032 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:5A33