Reviewed, UniProtKB/Swiss-Prot P03598 (COAT_TOBSV)

Names and origin

Protein names

Recommended name:
    Coat protein
Alternative name(s):
    Capsid protein
      Short name=CP

Gene names

Name:	RNA4
Synonyms:	ORF3b

Organism

Tobacco streak virus (strain WC) (TSV)

Taxonomic identifier

12318 [NCBI]

Taxonomic lineage

Viruses › ssRNA positive-strand viruses, no DNA stage › Bromoviridae › Ilarvirus

Virus host

Glycine max (Soybean) [TaxID: 3847]
Phaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]
Asparagus officinalis (Garden asparagus) [TaxID: 4686]
Gossypium herbaceum [TaxID: 34274]
Dahlia [TaxID: 41562]
Melilotus alba (White sweet clover) [TaxID: 47082]
Trifolium pratense (Red clover) [TaxID: 57577]
Rosa setigera [TaxID: 137000]

Protein attributes

Sequence length	237 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Coat protein. Probably binds RNA and play a role in packaging By similarity.
Subcellular location	Virion Potential.
Miscellaneous	The virus has a tripartite genome (RNA1, RNA2 and RNA3) and an encapsidated subgenomic RNA (RNA4) from which the coat protein is expressed.

Ontologies

Keywords
Cellular component	Capsid protein Virion
Ligand	RNA-binding Viral nucleoprotein
Molecular function	Ribonucleoprotein
Gene Ontology (GO)
Cellular component	ribonucleoprotein complex Inferred from electronic annotation. Source: UniProtKB-KW viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural molecule activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 237	237	Coat protein		PRO_0000083225

Sequences

	Sequence		Length	Mass (Da)
	P03598-1 [UniParc]. Last modified July 21, 1986. Version 1. Checksum: E1FF87AEC7102523	FASTA	237	26,237
	10 20 30 40 50 60 MNTLIQGPDH PSNAMSSRAN NRSNNSRCPT CIDELDAMAR NCPAHNTVNT VSRRQRRNAA 70 80 90 100 110 120 RAAAYRNANA RVPLPLPVVS VSRPQAKASL RLPNNQVWVT RKASEWSAKT VDTNDAIPFK 130 140 150 160 170 180 TIVEGIPEIG AETKFFRLLI GFVAVSDGTF GMVDGVTGDV IPDPPVVGRL GFKKNTYRSR 190 200 210 220 230 DFDLGGKLLN QLDDRAVVWC LDERRREAKR VQLAGYWIAI SKPAPLMPPE DFLVNQD

References

[1]	"Complete nucleotide sequence of tobacco streak virus RNA 3." Cornelissen B.J.C., Janssen H., Zuidema D., Bol J.F. Nucleic Acids Res. 12:2427-2437(1984) [PubMed: 6546793] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	X00435 Genomic RNA. Translation: CAA25133.1.
PIR	VCBVWC. A04206.
RefSeq	NP_620774.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	962660.
Family and domain databases
InterPro	IPR002681. Coat_Ilarvirus. IPR016405. Coat_Ilarvirus_prd. [Graphical view]
Pfam	PF01787. Ilar_coat. 1 hit. [Graphical view]
PIRSF	PIRSF004078. Coat_Ilarvirus_prd. 1 hit.
ProtoNet	Search...

Entry information

Entry name

COAT_TOBSV

Accession

Primary (citable) accession number: P03598

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 21, 1986
Last sequence update:	July 21, 1986
Last modified:	November 4, 2008
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

Virus (Virus annotation project)