ID CAPSD_TMGMV Reviewed; 159 AA. AC P03579; DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 3. DT 08-NOV-2023, entry version 103. DE RecName: Full=Capsid protein; DE AltName: Full=Coat protein; GN Name=CP; OS Tobacco mild green mosaic virus (TMGMV) (TMV strain U2). OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Martellivirales; Virgaviridae; Tobamovirus. OX NCBI_TaxID=12241; OH NCBI_TaxID=4072; Capsicum annuum (Capsicum pepper). OH NCBI_TaxID=43071; Eryngium planum. OH NCBI_TaxID=4090; Nicotiana glauca (Glaucous tobacco) (Tree tobacco). OH NCBI_TaxID=4097; Nicotiana tabacum (Common tobacco). RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC RNA]. RX PubMed=2371769; DOI=10.1016/0042-6822(90)90520-2; RA Solis I., Garcia-Arenal F.; RT "The complete nucleotide sequence of the genomic RNA of the tobamovirus RT tobacco mild green mosaic virus."; RL Virology 177:553-558(1990). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC RNA]. RC STRAIN=ATCC PV-228; RX PubMed=1984654; DOI=10.1016/0042-6822(91)90036-b; RA Nejidat A., Cellier F., Holt C.A., Gafny R., Eggenberger A.L., Beachy R.N.; RT "Transfer of the movement protein gene between two tobamoviruses: influence RT on local lesion development."; RL Virology 180:318-326(1991). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC RNA]. RC STRAIN=TMGMVCPR-22; RX PubMed=10675395; DOI=10.1099/0022-1317-81-3-577; RA Bodaghi S., Ngon A Yassi M., Dodds J.A.; RT "Heterogeneity in the 3'-terminal untranslated region of tobacco mild green RT mosaic tobamoviruses from Nicotiana glauca resulting in variants with three RT or six pseudoknots."; RL J. Gen. Virol. 81:577-586(2000). RN [4] RP PROTEIN SEQUENCE OF 2-62 AND 136-159. RX PubMed=4381390; RA Wittmann H.G.; RT "Primary protein structure of strains of tobacco mosaic virus. IV. Amino RT acid sequences (1 to 61 and 135 to 158) of proteins of tobacco mosaic virus RT strain U2."; RL Z. Naturforsch. B 20:1213-1223(1965). RN [5] RP PROTEIN SEQUENCE OF 63-135. RX PubMed=5586539; DOI=10.1007/bf00425778; RA Rentschler L.; RT "Amino acid sequence and physico-chemical behavior of coat proteins of wild RT strain tobacco mosaic virus. I. Analysis of primary structure (pos. 62-134) RT of coat proteins of wild strain U2."; RL Mol. Gen. Genet. 100:84-95(1967). RN [6] RP X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS). RX PubMed=1453461; DOI=10.1016/0022-2836(92)90839-c; RA Pattanayek R., Stubbs G.; RT "Structure of the U2 strain of tobacco mosaic virus refined at 3.5-A RT resolution using X-ray fiber diffraction."; RL J. Mol. Biol. 228:516-528(1992). CC -!- FUNCTION: Capsid protein self-assembles to form rod-shaped virions CC about 18 nm in diameter with a central canal enclosing the viral CC genomic RNA. CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}. CC -!- SIMILARITY: Belongs to the virgaviridae capsid protein family. CC {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M34077; AAA47937.1; -; Genomic_RNA. DR EMBL; M34236; AAA47939.1; -; Genomic_RNA. DR EMBL; AF132907; AAD41791.1; -; Genomic_RNA. DR PIR; C35520; VCTMUT. DR RefSeq; NP_062916.1; NC_001556.1. DR PDB; 1VTM; Fiber; 3.50 A; P=2-159. DR PDBsum; 1VTM; -. DR SMR; P03579; -. DR GeneID; 1494073; -. DR KEGG; vg:1494073; -. DR OrthoDB; 12635at10239; -. DR EvolutionaryTrace; P03579; -. DR Proteomes; UP000000281; Genome. DR GO; GO:0019029; C:helical viral capsid; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR Gene3D; 1.20.120.70; Tobacco mosaic virus-like, coat protein; 1. DR InterPro; IPR001337; TMV-like_coat. DR InterPro; IPR036417; TMV-like_coat_sf. DR Pfam; PF00721; TMV_coat; 1. DR SUPFAM; SSF47195; TMV-like viral coat proteins; 1. PE 1: Evidence at protein level; KW 3D-structure; Capsid protein; Direct protein sequencing; KW Helical capsid protein; Virion. FT INIT_MET 1 FT /note="Removed; by host" FT /evidence="ECO:0000269|PubMed:4381390" FT CHAIN 2..159 FT /note="Capsid protein" FT /id="PRO_0000144945" FT CONFLICT 23 FT /note="Q -> E (in Ref. 4; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 56..58 FT /note="VPS -> SPV (in Ref. 4; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 101..112 FT /note="PAPNTTEIVNAT -> ABPTTAVPIBTZ (in Ref. 5; AA FT sequence)" FT /evidence="ECO:0000305" FT TURN 8..10 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 11..14 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 22..24 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 25..31 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 39..52 FT /evidence="ECO:0007829|PDB:1VTM" FT STRAND 59..61 FT /evidence="ECO:0007829|PDB:1VTM" FT STRAND 69..74 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 77..87 FT /evidence="ECO:0007829|PDB:1VTM" FT TURN 98..101 FT /evidence="ECO:0007829|PDB:1VTM" FT STRAND 106..110 FT /evidence="ECO:0007829|PDB:1VTM" FT TURN 112..116 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 117..131 FT /evidence="ECO:0007829|PDB:1VTM" FT STRAND 133..135 FT /evidence="ECO:0007829|PDB:1VTM" FT HELIX 142..145 FT /evidence="ECO:0007829|PDB:1VTM" SQ SEQUENCE 159 AA; 17590 MW; 7F0169830984069F CRC64; MPYTINSPSQ FVYLSSAYAD PVQLINLCTN ALGNQFQTQQ ARTTVQQQFA DAWKPVPSMT VRFPASDFYV YRYNSTLDPL ITALLNSFDT RNRIIEVDNQ PAPNTTEIVN ATQRVDDATV AIRASINNLA NELVRGTGMF NQAGFETASG LVWTTTPAT //