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P03579

- CAPSD_TMGMV

UniProt

P03579 - CAPSD_TMGMV

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Protein

Capsid protein

Gene

CP

Organism
Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTobacco mild green mosaic virus (TMGMV) (TMV strain U2)
Taxonomic identifieri12241 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiCapsicum annuum (Bell pepper) [TaxID: 4072]
Eryngium planum [TaxID: 43071]
Nicotiana glauca (Glaucous tobacco) (Tree tobacco) [TaxID: 4090]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]
ProteomesiUP000000281: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. helical viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed; by host1 Publication
Chaini2 – 159158Capsid proteinPRO_0000144945Add
BLAST

Structurei

Secondary structure

1
159
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni8 – 103
Helixi11 – 144
Helixi22 – 243
Helixi25 – 317
Helixi39 – 5214
Beta strandi59 – 613
Beta strandi69 – 746
Helixi77 – 8711
Turni98 – 1014
Beta strandi106 – 1105
Turni112 – 1165
Helixi117 – 13115
Beta strandi133 – 1353
Helixi142 – 1454

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VTMfiber diffraction3.50P2-159[»]
ProteinModelPortaliP03579.
SMRiP03579. Positions 2-159.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP03579.

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiIPR001337. TMV-like_coat.
[Graphical view]
PfamiPF00721. TMV_coat. 1 hit.
[Graphical view]
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P03579-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPYTINSPSQ FVYLSSAYAD PVQLINLCTN ALGNQFQTQQ ARTTVQQQFA
60 70 80 90 100
DAWKPVPSMT VRFPASDFYV YRYNSTLDPL ITALLNSFDT RNRIIEVDNQ
110 120 130 140 150
PAPNTTEIVN ATQRVDDATV AIRASINNLA NELVRGTGMF NQAGFETASG

LVWTTTPAT
Length:159
Mass (Da):17,590
Last modified:January 23, 2007 - v3
Checksum:i7F0169830984069F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti23 – 231Q → E AA sequence (PubMed:4381390)Curated
Sequence conflicti56 – 583VPS → SPV AA sequence (PubMed:4381390)Curated
Sequence conflicti101 – 11212PAPNT…IVNAT → ABPTTAVPIBTZ AA sequence (PubMed:5586539)CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M34077 Genomic RNA. Translation: AAA47937.1.
M34236 Genomic RNA. Translation: AAA47939.1.
AF132907 Genomic RNA. Translation: AAD41791.1.
PIRiC35520. VCTMUT.
RefSeqiNP_062916.1. NC_001556.1.

Genome annotation databases

GeneIDi1494073.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M34077 Genomic RNA. Translation: AAA47937.1 .
M34236 Genomic RNA. Translation: AAA47939.1 .
AF132907 Genomic RNA. Translation: AAD41791.1 .
PIRi C35520. VCTMUT.
RefSeqi NP_062916.1. NC_001556.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VTM fiber diffraction 3.50 P 2-159 [» ]
ProteinModelPortali P03579.
SMRi P03579. Positions 2-159.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1494073.

Miscellaneous databases

EvolutionaryTracei P03579.

Family and domain databases

Gene3Di 1.20.120.70. 1 hit.
InterProi IPR001337. TMV-like_coat.
[Graphical view ]
Pfami PF00721. TMV_coat. 1 hit.
[Graphical view ]
SUPFAMi SSF47195. SSF47195. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of the genomic RNA of the tobamovirus tobacco mild green mosaic virus."
    Solis I., Garcia-Arenal F.
    Virology 177:553-558(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Transfer of the movement protein gene between two tobamoviruses: influence on local lesion development."
    Nejidat A., Cellier F., Holt C.A., Gafny R., Eggenberger A.L., Beachy R.N.
    Virology 180:318-326(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: ATCC PV-228.
  3. "Heterogeneity in the 3'-terminal untranslated region of tobacco mild green mosaic tobamoviruses from Nicotiana glauca resulting in variants with three or six pseudoknots."
    Bodaghi S., Ngon A Yassi M., Dodds J.A.
    J. Gen. Virol. 81:577-586(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: TMGMVCPR-22.
  4. "Primary protein structure of strains of tobacco mosaic virus. IV. Amino acid sequences (1 to 61 and 135 to 158) of proteins of tobacco mosaic virus strain U2."
    Wittmann H.G.
    Z. Naturforsch. B 20:1213-1223(1965) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-62 AND 136-159.
  5. "Amino acid sequence and physico-chemical behavior of coat proteins of wild strain tobacco mosaic virus. I. Analysis of primary structure (pos. 62-134) of coat proteins of wild strain U2."
    Rentschler L.
    Mol. Gen. Genet. 100:84-95(1967) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 63-135.
  6. "Structure of the U2 strain of tobacco mosaic virus refined at 3.5-A resolution using X-ray fiber diffraction."
    Pattanayek R., Stubbs G.
    J. Mol. Biol. 228:516-528(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS).

Entry informationi

Entry nameiCAPSD_TMGMV
AccessioniPrimary (citable) accession number: P03579
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: October 1, 2014
This is version 76 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3