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P03579

- CAPSD_TMGMV

UniProt

P03579 - CAPSD_TMGMV

Protein

Capsid protein

Gene

CP

Organism
Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    Gene namesi
    Name:CP
    OrganismiTobacco mild green mosaic virus (TMGMV) (TMV strain U2)
    Taxonomic identifieri12241 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
    Virus hostiCapsicum annuum (Bell pepper) [TaxID: 4072]
    Eryngium planum [TaxID: 43071]
    Nicotiana glauca (Glaucous tobacco) (Tree tobacco) [TaxID: 4090]
    Nicotiana tabacum (Common tobacco) [TaxID: 4097]
    ProteomesiUP000000281: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. helical viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, Helical capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed; by host1 Publication
    Chaini2 – 159158Capsid proteinPRO_0000144945Add
    BLAST

    Structurei

    Secondary structure

    1
    159
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Turni8 – 103
    Helixi11 – 144
    Helixi22 – 243
    Helixi25 – 317
    Helixi39 – 5214
    Beta strandi59 – 613
    Beta strandi69 – 746
    Helixi77 – 8711
    Turni98 – 1014
    Beta strandi106 – 1105
    Turni112 – 1165
    Helixi117 – 13115
    Beta strandi133 – 1353
    Helixi142 – 1454

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VTMfiber diffraction3.50P2-159[»]
    ProteinModelPortaliP03579.
    SMRiP03579. Positions 2-159.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP03579.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the virgaviridae capsid protein family.Curated

    Family and domain databases

    Gene3Di1.20.120.70. 1 hit.
    InterProiIPR001337. TMV-like_coat.
    [Graphical view]
    PfamiPF00721. TMV_coat. 1 hit.
    [Graphical view]
    SUPFAMiSSF47195. SSF47195. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P03579-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPYTINSPSQ FVYLSSAYAD PVQLINLCTN ALGNQFQTQQ ARTTVQQQFA    50
    DAWKPVPSMT VRFPASDFYV YRYNSTLDPL ITALLNSFDT RNRIIEVDNQ 100
    PAPNTTEIVN ATQRVDDATV AIRASINNLA NELVRGTGMF NQAGFETASG 150
    LVWTTTPAT 159
    Length:159
    Mass (Da):17,590
    Last modified:January 23, 2007 - v3
    Checksum:i7F0169830984069F
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti23 – 231Q → E AA sequence (PubMed:4381390)Curated
    Sequence conflicti56 – 583VPS → SPV AA sequence (PubMed:4381390)Curated
    Sequence conflicti101 – 11212PAPNT…IVNAT → ABPTTAVPIBTZ AA sequence (PubMed:5586539)CuratedAdd
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M34077 Genomic RNA. Translation: AAA47937.1.
    M34236 Genomic RNA. Translation: AAA47939.1.
    AF132907 Genomic RNA. Translation: AAD41791.1.
    PIRiC35520. VCTMUT.
    RefSeqiNP_062916.1. NC_001556.1.

    Genome annotation databases

    GeneIDi1494073.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M34077 Genomic RNA. Translation: AAA47937.1 .
    M34236 Genomic RNA. Translation: AAA47939.1 .
    AF132907 Genomic RNA. Translation: AAD41791.1 .
    PIRi C35520. VCTMUT.
    RefSeqi NP_062916.1. NC_001556.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VTM fiber diffraction 3.50 P 2-159 [» ]
    ProteinModelPortali P03579.
    SMRi P03579. Positions 2-159.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1494073.

    Miscellaneous databases

    EvolutionaryTracei P03579.

    Family and domain databases

    Gene3Di 1.20.120.70. 1 hit.
    InterProi IPR001337. TMV-like_coat.
    [Graphical view ]
    Pfami PF00721. TMV_coat. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47195. SSF47195. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence of the genomic RNA of the tobamovirus tobacco mild green mosaic virus."
      Solis I., Garcia-Arenal F.
      Virology 177:553-558(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "Transfer of the movement protein gene between two tobamoviruses: influence on local lesion development."
      Nejidat A., Cellier F., Holt C.A., Gafny R., Eggenberger A.L., Beachy R.N.
      Virology 180:318-326(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
      Strain: ATCC PV-228.
    3. "Heterogeneity in the 3'-terminal untranslated region of tobacco mild green mosaic tobamoviruses from Nicotiana glauca resulting in variants with three or six pseudoknots."
      Bodaghi S., Ngon A Yassi M., Dodds J.A.
      J. Gen. Virol. 81:577-586(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
      Strain: TMGMVCPR-22.
    4. "Primary protein structure of strains of tobacco mosaic virus. IV. Amino acid sequences (1 to 61 and 135 to 158) of proteins of tobacco mosaic virus strain U2."
      Wittmann H.G.
      Z. Naturforsch. B 20:1213-1223(1965) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-62 AND 136-159.
    5. "Amino acid sequence and physico-chemical behavior of coat proteins of wild strain tobacco mosaic virus. I. Analysis of primary structure (pos. 62-134) of coat proteins of wild strain U2."
      Rentschler L.
      Mol. Gen. Genet. 100:84-95(1967) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 63-135.
    6. "Structure of the U2 strain of tobacco mosaic virus refined at 3.5-A resolution using X-ray fiber diffraction."
      Pattanayek R., Stubbs G.
      J. Mol. Biol. 228:516-528(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS).

    Entry informationi

    Entry nameiCAPSD_TMGMV
    AccessioniPrimary (citable) accession number: P03579
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 76 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3