Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P03579 (CAPSD_TMGMV) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene names
Name:CP
OrganismTobacco mild green mosaic virus (TMGMV) (TMV strain U2) [Complete proteome]
Taxonomic identifier12241 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostCapsicum annuum (Bell pepper) [TaxID: 4072]
Eryngium planum [TaxID: 43071]
Nicotiana glauca (Glaucous tobacco) (Tree tobacco) [TaxID: 4090]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]

Protein attributes

Sequence length159 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the virgaviridae capsid protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed; by host Ref.4
Chain2 – 159158Capsid protein
PRO_0000144945

Experimental info

Sequence conflict231Q → E AA sequence Ref.4
Sequence conflict56 – 583VPS → SPV AA sequence Ref.4
Sequence conflict101 – 11212PAPNT…IVNAT → ABPTTAVPIBTZ AA sequence Ref.5

Secondary structure

.......................... 159
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P03579 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 7F0169830984069F

FASTA15917,590
        10         20         30         40         50         60 
MPYTINSPSQ FVYLSSAYAD PVQLINLCTN ALGNQFQTQQ ARTTVQQQFA DAWKPVPSMT 

        70         80         90        100        110        120 
VRFPASDFYV YRYNSTLDPL ITALLNSFDT RNRIIEVDNQ PAPNTTEIVN ATQRVDDATV 

       130        140        150 
AIRASINNLA NELVRGTGMF NQAGFETASG LVWTTTPAT 

« Hide

References

[1]"The complete nucleotide sequence of the genomic RNA of the tobamovirus tobacco mild green mosaic virus."
Solis I., Garcia-Arenal F.
Virology 177:553-558(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Transfer of the movement protein gene between two tobamoviruses: influence on local lesion development."
Nejidat A., Cellier F., Holt C.A., Gafny R., Eggenberger A.L., Beachy R.N.
Virology 180:318-326(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Strain: ATCC PV-228.
[3]"Heterogeneity in the 3'-terminal untranslated region of tobacco mild green mosaic tobamoviruses from Nicotiana glauca resulting in variants with three or six pseudoknots."
Bodaghi S., Ngon A Yassi M., Dodds J.A.
J. Gen. Virol. 81:577-586(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Strain: TMGMVCPR-22.
[4]"Primary protein structure of strains of tobacco mosaic virus. IV. Amino acid sequences (1 to 61 and 135 to 158) of proteins of tobacco mosaic virus strain U2."
Wittmann H.G.
Z. Naturforsch. B 20:1213-1223(1965) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-62 AND 136-159.
[5]"Amino acid sequence and physico-chemical behavior of coat proteins of wild strain tobacco mosaic virus. I. Analysis of primary structure (pos. 62-134) of coat proteins of wild strain U2."
Rentschler L.
Mol. Gen. Genet. 100:84-95(1967) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 63-135.
[6]"Structure of the U2 strain of tobacco mosaic virus refined at 3.5-A resolution using X-ray fiber diffraction."
Pattanayek R., Stubbs G.
J. Mol. Biol. 228:516-528(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M34077 Genomic RNA. Translation: AAA47937.1.
M34236 Genomic RNA. Translation: AAA47939.1.
AF132907 Genomic RNA. Translation: AAD41791.1.
PIRVCTMUT. C35520.
RefSeqNP_062916.1. NC_001556.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VTMfiber diffraction3.50P2-159[»]
ProteinModelPortalP03579.
SMRP03579. Positions 2-159.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1494073.

Family and domain databases

Gene3D1.20.120.70. 1 hit.
InterProIPR001337. TMV-like_coat.
[Graphical view]
PfamPF00721. TMV_coat. 1 hit.
[Graphical view]
SUPFAMSSF47195. SSF47195. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP03579.

Entry information

Entry nameCAPSD_TMGMV
AccessionPrimary (citable) accession number: P03579
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: April 16, 2014
This is version 75 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references