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Protein

Glycinin G4

Gene

GY4

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glycinin is the major seed storage protein of soybean.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Names & Taxonomyi

Protein namesi
Recommended name:
Glycinin G4
Cleaved into the following 3 chains:
Gene namesi
Name:GY4
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

Pathology & Biotechi

Protein family/group databases

Allergomei5821. Gly m 6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Add
BLAST
Chaini24 – 12097Glycinin A5 subunitPRO_0000032020Add
BLAST
Chaini121 – 377257Glycinin A4 subunitPRO_0000032021Add
BLAST
Chaini378 – 562185Glycinin B3 subunitPRO_0000032022Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi32 ↔ 65By similarity
Disulfide bondi108 ↔ 384Interchain (between A5 and B3 chains)By similarity

Keywords - PTMi

Disulfide bond

Interactioni

Subunit structurei

Hexamer; each subunit is composed of an acidic and a basic chain derived from a single precursor and linked by a disulfide bond.

Protein-protein interaction databases

STRINGi3847.GLYMA10G04280.1.

Structurei

3D structure databases

ProteinModelPortaliP02858.
SMRiP02858. Positions 30-550.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP02858.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 4 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P02858-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPFTLSLS SLCLLLLSSA CFAISSSKLN ECQLNNLNAL EPDHRVESEG
60 70 80 90 100
GLIQTWNSQH PELKCAGVTV SKLTLNRNGL HSPSYSPYPR MIIIAQGKGA
110 120 130 140 150
LGVAIPGCPE TFEEPQEQSN RRGSRSQKQQ LQDSHQKIRH FNEGDVLVIP
160 170 180 190 200
PSVPYWTYNT GDEPVVAISL LDTSNFNNQL DQTPRVFYLA GNPDIEYPET
210 220 230 240 250
MQQQQQQKSH GGRKQGQHQQ EEEEEGGSVL SGFSKHFLAQ SFNTNEDIAE
260 270 280 290 300
KLESPDDERK QIVTVEGGLS VISPKWQEQQ DEDEDEDEDD EDEQIPSHPP
310 320 330 340 350
RRPSHGKREQ DEDEDEDEDK PRPSRPSQGK RNKTGQDEDE DEDEDQPRKS
360 370 380 390 400
REWRSKKTQP RRPRQEEPRE RGCETRNGVE ENICTLKLHE NIARPSRADF
410 420 430 440 450
YNPKAGRIST LNSLTLPALR QFQLSAQYVV LYKNGIYSPH WNLNANSVIY
460 470 480 490 500
VTRGQGKVRV VNCQGNAVFD GELRRGQLLV VPQNFVVAEQ AGEQGFEYIV
510 520 530 540 550
FKTHHNAVTS YLKDVFRAIP SEVLAHSYNL RQSQVSELKY EGNWGPLVNP
560
ESQQGSPRVK VA
Length:562
Mass (Da):63,587
Last modified:August 13, 1987 - v1
Checksum:iF5A06B8856B9BBD6
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti29 – 291L → F AA sequence (Ref. 2) Curated
Sequence conflicti82 – 821S → L AA sequence (Ref. 2) Curated
Sequence conflicti86 – 861S → L AA sequence (Ref. 2) Curated
Sequence conflicti94 – 941I → V AA sequence (Ref. 2) Curated
Sequence conflicti101 – 1033LGV → IGM AA sequence (Ref. 2) Curated
Sequence conflicti105 – 1051I → F AA sequence (Ref. 2) Curated
Sequence conflicti117 – 1171E → Q AA sequence (Ref. 2) Curated
Sequence conflicti253 – 2531E → Q in CAB57802 (Ref. 3) Curated
Sequence conflicti332 – 3354NKTG → EQDQD in CAB57802 (Ref. 3) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02626 mRNA. Translation: CAA26478.1.
X05652 mRNA. Translation: CAB57802.1.
PIRiA91145. FWSYG5.
JA0152.
RefSeqiNP_001235795.1. NM_001248866.1.
UniGeneiGma.29627.
Gma.35585.
Gma.62673.

Genome annotation databases

GeneIDi547899.
KEGGigmx:547899.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02626 mRNA. Translation: CAA26478.1.
X05652 mRNA. Translation: CAB57802.1.
PIRiA91145. FWSYG5.
JA0152.
RefSeqiNP_001235795.1. NM_001248866.1.
UniGeneiGma.29627.
Gma.35585.
Gma.62673.

3D structure databases

ProteinModelPortaliP02858.
SMRiP02858. Positions 30-550.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA10G04280.1.

Protein family/group databases

Allergomei5821. Gly m 6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi547899.
KEGGigmx:547899.

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
InParanoidiP02858.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 4 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLYG4_SOYBN
AccessioniPrimary (citable) accession number: P02858
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: August 13, 1987
Last modified: March 16, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.